rna6582, rna6582 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6582
Unique Name	rna6582
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1215
Alignment location	CM002468.1:846494..848049 -

Link to JBrowse

Properties


Property Name	Value
Product	enzyme of the cupin superfamily
Orig transcript id	gnl\|cribi\|Naga_100286g3.3551.mrna
Orig protein id	gnl\|cribi\|Naga_100286g3.3551
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:846494..848049 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100286g3	gene6361	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6582	rna6582-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24108.1	cds6566	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:846494..848049-
coding sequence from alignment at CM002468.1:846494..848049-

mRNA sequence

>rna6582 ID=rna6582|Name=rna6582|organism=Nannochloropsis gaditana|type=mRNA|length=1215bp
ATGGCTCGTATTATGCGTTCCGTGGCCACCATGGCCATGCTTACCTTCGC
CAGCCTCGCGGTTGCTGAGAGCCCAATGCGCCGCATGCAGTCTCTCACTG
GCGTGCTCTCTGGCGCAGCCAAGGATGTCATGGAGGACACGCTTCCTGCT
TACAAGCCTGACGCCGAGCTCACCATGATGCAGGACACCTGGAAGAATGG
CCTTGATATCATGAAGCTCTTTGAGACCAGCTTTGCCTCCCCGGGGATGA
AGGCGATCCTGGACGACGTGGAGACCCAGCACAAAATCATGGAAAACTTG
CCGTTGCTTGCTGCCTTCGATGGCTTCAAGGAGATCACGGGGCGCCGCCT
GGATGATGCCGGGACCACTGCCGGTTTTACGGCGGGCCTGAACAGCATTT
TGAAAACGCTGCCTGACATGCTTAAGACCATGAAGGATCCGAGCATCTCC
ACCCGCGCTCTTTCTGAGCTGCTGGCAGAGGATGCCAACAACATCAGCGA
GGCTTTCGCCGCCGCTTCTGCCGGTGACGGGGGCGCCATGGACACAGTCA
ACGAGGCTCTCAACAAGAAGTTGTACCCTGGCGTGAACACAGACGTCCTG
AAGACCGTGAGCGCGTCGGACCCCCTCTCCAAGGTTACCGGCAACAATGA
GATCATGCGCCTCATCAACGACGACCCCATTGTCACGGCCGCTCTCACAG
AGAGGGACCCGGCCAAACTCGATGCGTTCGTCAAGGACTACGCCGCCAGC
CGCCGCTTCCGATTCTGTACGTTTACCCTCTTTCCTATCCTATTCTATAT
CATGCACTTTCTCTTCGATAAATCTCTCTCCGGTTCCGAGACGCATTACT
CGACATTAAAGACGGGAAATACGGAAGAAACAGAGGAGGGCTGCAGAACA
TTTTCAATGCGTAGGAATGTATCTAAGGTGACGGCGAGGCAGGGTGGAAG
TCAAGCATCAATTTTCTTTAATGTATGTGTTGAGCGCGATGCACGTGGAA
GAAGGAGGGAAGGAAGGCTAATATTCAGGTGTGACACTACTCAAACACTG
TGGTTGAGGAGGCACTGCAAGCCCCTTTTTAACTTCAAGTTCCTGATGCC
TTTCCGGTTTGAGTCTCTTATGTATATGCGTTTGGATATGGACAGGACCC
TGATGTACGCGGTCAGACAAGAAGAAACGGGAAGGGGCAGTGGGCACGCG
ATATCGTTGGATTAA

protein sequence of rna6582

>rna6582-protein ID=rna6582-protein|Name=rna6582|organism=Nannochloropsis gaditana|type=polypeptide|length=226bp
MRTTSGLPLVFLLLSLVLAGFWAPAASFLLPALPSFVTNFDFKKRATLGG
LSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGE
AETCHAVEWPACDRGRGRLGHLPCGHELRMESKQGHQQTLQIPLVTLPRS
FRKAQLEVRQLSDYLCVEFLITDGGAKLCNDGMKEMSVYPDQYLQRKRNH
HWKTRLSAPCIISLLYFRPSFPVLSM

mRNA from alignment at CM002468.1:846494..848049-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6582 ID=rna6582|Name=rna6582|organism=Nannochloropsis gaditana|type=mRNA|length=1556bp|location=Sequence derived from alignment at CM002468.1:846494..848049- (Nannochloropsis gaditana)
ATGCGTACAACTAGCGGCTTGCCCCTCGTATTCCTTCTGCTTTCTCTTGT
GTTGGCCGGATTCTGGGCTCCTGCTGCCTCCTTCCTCCTTCCGGCCCTTC
CCTCCTTTGTAACGAACTTCGACTTTAAAAAACGAGCAACTTTAGGGGTG
TGTATGGGTGCCTGGTTTTTGCATTTTCATACCTCCGCATCTTTGATTCT
CTCCGCTCATGCTTGTGTATTTTCTATGTATTGCGCATGGAAAATATCCA
GGGCGTTCCCCATCCCCTTCAAAAAGGCAGGGTCATGAGCTCATTCGTGC
CGTAGATGGGTAGAATTACAAGCGTTTCCCCCCAAATTGAAACTCGCATA
TCCACCATGAACTCGTGCACATAGGGACTTTCCGCCTCCACCACACGCGA
TAGCAGCAATATGAGCGGCATTAAGGTCGTTTCGGAGCCGGACGAGGCCA
CGCTGACTGAGATGGTATATGTGGAGAGGTGGTACGATTTATAGAGCCGG
TTGCCCTAAGTCTGACCATTTATTCTTACGTGAAGCGTCACTGCTAAGCA
TGAGCCTGCCTTGTGCTCAAGGGAGGACTGACTCACCCTATCTTCCCTCC
CCGCTTACGCCTCTCCCAGGGGGTGAGAAATTGGCCCAAGTGGGGCTGTG
AACCCTCAGAGTTCCCTTGGACATACGGAGAAGCTGAGACCTGGTAAGCT
TCTTTCCTTGGTCTGCAACGGGGTCATTGTTTGACAAAATTGTGAGGCCC
CACCCCCTTTTTGCCGGCGACTCCTGTTTCACCCAGCCTGACGCAGTCAG
TTCCTTTGTGACGTGCGAAGGCGACTCACCTTCCCTCTCCTCCTCTTTTC
TGCTCGCGTAAATGCTCTCTTGTCTTCCACCCTGCTTTCTTAGCTACATC
TTGGAGGGTAGCGTGACAGTCACGCCGTCGAATGGCCAGCCTGTGACCGT
GGGCGCGGGAGACTTGGTCACCTTCCCTGCGGGCATGAGCTGCGTATGGT
GAGAGGATGGGGAAAGAGGAAGAGAAGGAGGCAAGGTCAGGGAGAGGGGC
GCTCCTTGTTTGAGGTCCCGTCGATGGTATGAAAGGTTACGATGTTGTGA
TGGCATGTCTCAAACGAGGCGCCCAAGCGTCGTTACTATTAGGATTCTTT
CATTCCATCTAATACCGTATTTTTCATATTTGGTCCAAGTGTTTTGTTAC
ACATTCTCGCGCCGACTTTATTTTTATATTTTTAAATCGCCTTTTTCTTC
ATCGCTCATGCTCAGGAAAGTAAGCAAGGCCATCAACAAACACTACAAAT
TCCACTAGTCACTCTTCCGCGCTCTTTCAGGAAGGCGCAGCTTGAAGTTC
GGCAATTGTCAGATTATCTATGCGTAGAATTTTTGATAACAGACGGTGGC
GCAAAATTATGCAATGATGGAATGAAAGAGATGAGCGTATACCCTGATCA
ATATCTACAACGTAAAAGGAATCACCATTGGAAGACTCGTCTGTCTGCCC
CCTGCATAATTTCCTTACTTTACTTCCGCCCCTCGTTTCCAGTCCTTTCC
ATGTGA

Coding sequence (CDS) from alignment at CM002468.1:846494..848049-

>rna6582 ID=rna6582|Name=rna6582|organism=Nannochloropsis gaditana|type=CDS|length=3405bp|location=Sequence derived from alignment at CM002468.1:846494..848049- (Nannochloropsis gaditana)
GAAAGTAAGCAAGGCCATCAACAAACACTACAAATTCCACTAGTCACTCT
TCCGCGCTCTTTCAGGAAGGCGCAGCTTGAAGTTCGGCAATTGTCAGATT
ATCTATGCGTAGAATTTTTGATAACAGACGGTGGCGCAAAATTATGCAAT
GATGGAATGAAAGAGATGAGCGTATACCCTGATCAATATCTACAACGTAA
AAGGAATCACCATTGGAAGACTCGTCTGTCTGCCCCCTGCATAATTTCCT
TACTTTACTTCCGCCCCTCGTTTCCAGTCCTTTCCATGTGATCACGCCGT
CGAATGGCCAGCCTGTGACCGTGGGCGCGGGAGACTTGGTCACCTTCCCT
GCGGGCATGAGCTGCGTATGGGGGTGAGAAATTGGCCCAAGTGGGGCTGT
GAACCCTCAGAGTTCCCTTGGACATACGGAGAAGCTGAGACCTGGGACTT
TCCGCCTCCACCACACGCGATAGCAGCAATATGAGCGGCATTAAGGTCGT
TTCGGAGCCGGACGAGGCCACGCTGACTGAGATGATGCGTACAACTAGCG
GCTTGCCCCTCGTATTCCTTCTGCTTTCTCTTGTGTTGGCCGGATTCTGG
GCTCCTGCTGCCTCCTTCCTCCTTCCGGCCCTTCCCTCCTTTGTAACGAA
CTTCGACTTTAAAAAACGAGCAACTTTAGGGGAAAGTAAGCAAGGCCATC
AACAAACACTACAAATTCCACTAGTCACTCTTCCGCGCTCTTTCAGGAAG
GCGCAGCTTGAAGTTCGGCAATTGTCAGATTATCTATGCGTAGAATTTTT
GATAACAGACGGTGGCGCAAAATTATGCAATGATGGAATGAAAGAGATGA
GCGTATACCCTGATCAATATCTACAACGTAAAAGGAATCACCATTGGAAG
ACTCGTCTGTCTGCCCCCTGCATAATTTCCTTACTTTACTTCCGCCCCTC
GTTTCCAGTCCTTTCCATGTGATCACGCCGTCGAATGGCCAGCCTGTGAC
CGTGGGCGCGGGAGACTTGGTCACCTTCCCTGCGGGCATGAGCTGCGTAT
GGGGGTGAGAAATTGGCCCAAGTGGGGCTGTGAACCCTCAGAGTTCCCTT
GGACATACGGAGAAGCTGAGACCTGGGACTTTCCGCCTCCACCACACGCG
ATAGCAGCAATATGAGCGGCATTAAGGTCGTTTCGGAGCCGGACGAGGCC
ACGCTGACTGAGATGATGCGTACAACTAGCGGCTTGCCCCTCGTATTCCT
TCTGCTTTCTCTTGTGTTGGCCGGATTCTGGGCTCCTGCTGCCTCCTTCC
TCCTTCCGGCCCTTCCCTCCTTTGTAACGAACTTCGACTTTAAAAAACGA
GCAACTTTAGGGGAAAGTAAGCAAGGCCATCAACAAACACTACAAATTCC
ACTAGTCACTCTTCCGCGCTCTTTCAGGAAGGCGCAGCTTGAAGTTCGGC
AATTGTCAGATTATCTATGCGTAGAATTTTTGATAACAGACGGTGGCGCA
AAATTATGCAATGATGGAATGAAAGAGATGAGCGTATACCCTGATCAATA
TCTACAACGTAAAAGGAATCACCATTGGAAGACTCGTCTGTCTGCCCCCT
GCATAATTTCCTTACTTTACTTCCGCCCCTCGTTTCCAGTCCTTTCCATG
TGATCACGCCGTCGAATGGCCAGCCTGTGACCGTGGGCGCGGGAGACTTG
GTCACCTTCCCTGCGGGCATGAGCTGCGTATGGGGGTGAGAAATTGGCCC
AAGTGGGGCTGTGAACCCTCAGAGTTCCCTTGGACATACGGAGAAGCTGA
GACCTGGGACTTTCCGCCTCCACCACACGCGATAGCAGCAATATGAGCGG
CATTAAGGTCGTTTCGGAGCCGGACGAGGCCACGCTGACTGAGATGATGC
GTACAACTAGCGGCTTGCCCCTCGTATTCCTTCTGCTTTCTCTTGTGTTG
GCCGGATTCTGGGCTCCTGCTGCCTCCTTCCTCCTTCCGGCCCTTCCCTC
CTTTGTAACGAACTTCGACTTTAAAAAACGAGCAACTTTAGGGGAAAGTA
AGCAAGGCCATCAACAAACACTACAAATTCCACTAGTCACTCTTCCGCGC
TCTTTCAGGAAGGCGCAGCTTGAAGTTCGGCAATTGTCAGATTATCTATG
CGTAGAATTTTTGATAACAGACGGTGGCGCAAAATTATGCAATGATGGAA
TGAAAGAGATGAGCGTATACCCTGATCAATATCTACAACGTAAAAGGAAT
CACCATTGGAAGACTCGTCTGTCTGCCCCCTGCATAATTTCCTTACTTTA
CTTCCGCCCCTCGTTTCCAGTCCTTTCCATGTGATCACGCCGTCGAATGG
CCAGCCTGTGACCGTGGGCGCGGGAGACTTGGTCACCTTCCCTGCGGGCA
TGAGCTGCGTATGGGGGTGAGAAATTGGCCCAAGTGGGGCTGTGAACCCT
CAGAGTTCCCTTGGACATACGGAGAAGCTGAGACCTGGGACTTTCCGCCT
CCACCACACGCGATAGCAGCAATATGAGCGGCATTAAGGTCGTTTCGGAG
CCGGACGAGGCCACGCTGACTGAGATGATGCGTACAACTAGCGGCTTGCC
CCTCGTATTCCTTCTGCTTTCTCTTGTGTTGGCCGGATTCTGGGCTCCTG
CTGCCTCCTTCCTCCTTCCGGCCCTTCCCTCCTTTGTAACGAACTTCGAC
TTTAAAAAACGAGCAACTTTAGGGGAAAGTAAGCAAGGCCATCAACAAAC
ACTACAAATTCCACTAGTCACTCTTCCGCGCTCTTTCAGGAAGGCGCAGC
TTGAAGTTCGGCAATTGTCAGATTATCTATGCGTAGAATTTTTGATAACA
GACGGTGGCGCAAAATTATGCAATGATGGAATGAAAGAGATGAGCGTATA
CCCTGATCAATATCTACAACGTAAAAGGAATCACCATTGGAAGACTCGTC
TGTCTGCCCCCTGCATAATTTCCTTACTTTACTTCCGCCCCTCGTTTCCA
GTCCTTTCCATGTGATCACGCCGTCGAATGGCCAGCCTGTGACCGTGGGC
GCGGGAGACTTGGTCACCTTCCCTGCGGGCATGAGCTGCGTATGGGGGTG
AGAAATTGGCCCAAGTGGGGCTGTGAACCCTCAGAGTTCCCTTGGACATA
CGGAGAAGCTGAGACCTGGGACTTTCCGCCTCCACCACACGCGATAGCAG
CAATATGAGCGGCATTAAGGTCGTTTCGGAGCCGGACGAGGCCACGCTGA
CTGAGATGATGCGTACAACTAGCGGCTTGCCCCTCGTATTCCTTCTGCTT
TCTCTTGTGTTGGCCGGATTCTGGGCTCCTGCTGCCTCCTTCCTCCTTCC
GGCCCTTCCCTCCTTTGTAACGAACTTCGACTTTAAAAAACGAGCAACTT
TAGGG

Synonyms

Publications