EWM24108.1, cds6566 (CDS) Nannochloropsis gaditana

Overview
NameEWM24108.1
Unique Namecds6566
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:847903..848049 -
Alignment locationCM002468.1:847586..847675 -
Alignment locationCM002468.1:847357..847430 -
Alignment locationCM002468.1:847052..847130 -
Alignment locationCM002468.1:846494..846784 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24108.1
Productenzyme of the cupin superfamily
Orig transcript idgnl|cribi|Naga_100286g3.3551.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:847903..848049 -
CM002468.1supercontigCM002468.1:847586..847675 -
CM002468.1supercontigCM002468.1:847357..847430 -
CM002468.1supercontigCM002468.1:847052..847130 -
CM002468.1supercontigCM002468.1:846494..846784 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008579DUF861_Cupin_3
IPR014710RmlC-like_jellyroll
Homology
BLAST of EWM24108.1 vs. NCBI_GenBank
Match: gi|585105442|gb|EWM24108.1| (enzyme of the cupin superfamily [Nannochloropsis gaditana])

HSP 1 Score: 470.7 bits (1210), Expect = 5.789e-168
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
Query:    1 MRTTSGLPLVFLLLSLVLAGFWAPAASFLLPALPSFVTNFDFKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVEWPACDRGRGRLGHLPCGHELRMESKQGHQQTLQIPLVTLPRSFRKAQLEVRQLSDYLCVEFLITDGGAKLCNDGMKEMSVYPDQYLQRKRNHHWKTRLSAPCIISLLYFRPSFPVLSM 226
            MRTTSGLPLVFLLLSLVLAGFWAPAASFLLPALPSFVTNFDFKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVEWPACDRGRGRLGHLPCGHELRMESKQGHQQTLQIPLVTLPRSFRKAQLEVRQLSDYLCVEFLITDGGAKLCNDGMKEMSVYPDQYLQRKRNHHWKTRLSAPCIISLLYFRPSFPVLSM
Sbjct:    1 MRTTSGLPLVFLLLSLVLAGFWAPAASFLLPALPSFVTNFDFKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVEWPACDRGRGRLGHLPCGHELRMESKQGHQQTLQIPLVTLPRSFRKAQLEVRQLSDYLCVEFLITDGGAKLCNDGMKEMSVYPDQYLQRKRNHHWKTRLSAPCIISLLYFRPSFPVLSM 226          
BLAST of EWM24108.1 vs. NCBI_GenBank
Match: gi|553183770|ref|XP_005853963.1| (enzyme of the cupin superfamily [Nannochloropsis gaditana CCMP526] >gi|422295098|gb|EKU22397.1| enzyme of the cupin superfamily [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 215.698 bits (548), Expect = 2.245e-68
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0
Query:    1 MRTTSGLPLVFLLLSLVLAGFWAPAASFLLPALPSFVTNFDFKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVE 108
            MRTTSGLPLVFLLLSLVLAGFWAPAASFL+PALPSFVTNFDFKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETC+ +E
Sbjct:    1 MRTTSGLPLVFLLLSLVLAGFWAPAASFLVPALPSFVTNFDFKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCYILE 108          
BLAST of EWM24108.1 vs. NCBI_GenBank
Match: gi|470107904|ref|XP_004290278.1| (PREDICTED: uncharacterized protein LOC101291295 [Fragaria vesca subsp. vesca])

HSP 1 Score: 75.8702 bits (185), Expect = 7.714e-14
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 0
Query:   43 KKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVEWPACDRGRGRLGHLPCGHELRMESKQG 135
            ++R ++   + S++  ++   GIK+   P E+TLT++GVRNWPKW C PS+FPWTY E ETC+ +E        G++   P G +  +E   G
Sbjct:   32 RRRISVTIAAVSSSSMATEKLGIKIEKNPPESTLTQLGVRNWPKWSCPPSKFPWTYSEKETCYLLE--------GKVKVTPAGSKESVEIGPG 116          
BLAST of EWM24108.1 vs. NCBI_GenBank
Match: gi|1191664060|gb|OTG16029.1| (putative rmlC-like jelly roll fold protein [Helianthus annuus])

HSP 1 Score: 75.8702 bits (185), Expect = 1.010e-13
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 0
Query:   42 FKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVEWPACDRGRGRLGHLPCGHELRMESKQG 135
            +K R   G + AS+   ++   GI +V  P E+ LTE+GVR+WPKWGC+PS+FPWTY   ETC+ +        +G++   P G +  +E   G
Sbjct:   48 YKTRRYQGLIKASSETMTTEKLGITIVKNPPESKLTELGVRSWPKWGCDPSKFPWTYSAKETCYLL--------KGKVKVYPEGSDEGVEIGAG 133          
BLAST of EWM24108.1 vs. NCBI_GenBank
Match: gi|719988380|ref|XP_010252315.1| (PREDICTED: uncharacterized protein LOC104593919 [Nelumbo nucifera])

HSP 1 Score: 75.485 bits (184), Expect = 1.256e-13
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 0
Query:   37 VTNFDFKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVEWPACDRGRGRLGHLPCGHELRMESKQGHQQTLQIPLVTLPRSFR 152
            ++  ++KK++  G L+      ++   GIK+   P EA LTE+GVR+WPKWGC PS+FPWTY   ETC+ +        +G++   P G+   +E   G        LV  P+  +
Sbjct:   32 LSGVNYKKQSRGGLLTIRAETMATEKMGIKIEKNPPEAKLTELGVRSWPKWGCPPSKFPWTYDAKETCYLL--------KGKVKVYPDGYNDFVEFGAGD-------LVEFPKGMK 132          
BLAST of EWM24108.1 vs. NCBI_GenBank
Match: gi|566200345|ref|XP_006376102.1| (hypothetical protein POPTR_0013s09550g [Populus trichocarpa] >gi|118487088|gb|ABK95374.1| unknown [Populus trichocarpa] >gi|550325366|gb|ERP53899.1| hypothetical protein POPTR_0013s09550g [Populus trichocarpa])

HSP 1 Score: 75.0998 bits (183), Expect = 1.857e-13
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 0
Query:   63 SGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVEWPACDRGRGRLGHLPCGHELRMESKQGH 136
            SGIKVV  P E+ LTE+GVR WPKWGC PS+FPWTY   ETC+ +E        G++   P G E  +E   G 
Sbjct:   72 SGIKVVRNPPESKLTELGVRKWPKWGCPPSKFPWTYSAKETCYLLE--------GKVKVYPDGAEEPVEITAGD 137          
BLAST of EWM24108.1 vs. NCBI_GenBank
Match: gi|727566123|ref|XP_010455428.1| (PREDICTED: uncharacterized protein LOC104737030 [Camelina sativa] >gi|727566125|ref|XP_010455429.1| PREDICTED: uncharacterized protein LOC104737030 [Camelina sativa])

HSP 1 Score: 74.3294 bits (181), Expect = 2.413e-13
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 0
Query:   40 FDFKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVEWPACDRGRGRLGHLPCGHELRMESKQGH 136
            +D ++  ++ G+ A +   ++   GI +   P E+ LT++GVRNWPKWGC PS+FPWTY   ETC+ +E        G++   P G E  +E + G 
Sbjct:   27 YDSRRSPSMAGIRAESM--ATEKLGITIEKNPPESKLTQLGVRNWPKWGCPPSKFPWTYSSKETCYLLE--------GKVKVYPDGSEEGVEIEAGD 113          
BLAST of EWM24108.1 vs. NCBI_GenBank
Match: gi|743932373|ref|XP_011010474.1| (PREDICTED: uncharacterized protein LOC105115323 [Populus euphratica])

HSP 1 Score: 74.7146 bits (182), Expect = 2.647e-13
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 0
Query:   63 SGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVEWPACDRGRGRLGHLPCGHELRMESKQG 135
            SGIKVV  P E+ LTE+GVR WPKWGC PS+FPWTY   ETC+ +E        G++   P G E  +E   G
Sbjct:   72 SGIKVVRNPPESKLTELGVRKWPKWGCPPSKFPWTYSAKETCYLLE--------GKVKVYPDGAEEPVEITAG 136          
BLAST of EWM24108.1 vs. NCBI_GenBank
Match: gi|747045604|ref|XP_011095014.1| (uncharacterized protein LOC105174565 [Sesamum indicum])

HSP 1 Score: 74.7146 bits (182), Expect = 2.919e-13
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0
Query:   51 LSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVE 108
            + ASTT++   + GIK+V  P E+ L+E+GVR+WPKWGC PS+FPWTY   ETC+ +E
Sbjct:   65 IMASTTKEIEKL-GIKIVKSPPESKLSELGVRSWPKWGCPPSKFPWTYSSKETCYLLE 121          
BLAST of EWM24108.1 vs. NCBI_GenBank
Match: gi|848913479|ref|XP_012854815.1| (PREDICTED: uncharacterized protein LOC105974294 [Erythranthe guttata] >gi|604303210|gb|EYU22683.1| hypothetical protein MIMGU_mgv1a016043mg [Erythranthe guttata])

HSP 1 Score: 73.9442 bits (180), Expect = 3.571e-13
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 0
Query:   25 AASFLLPALPSFVTN---FDFKKRATLGGLSASTTRDSSNMSGIKVVSEPDEATLTEMGVRNWPKWGCEPSEFPWTYGEAETCHAVE 108
              SFL P     VT    F   +R T      +    S+  S IK+V  P E+TL+E+GVR+WPKWGC PS+FPWTY   ETC+ +E
Sbjct:    9 GTSFLYPNGFKTVTKQSAFSLSRRTTGSSFRLNC---STEKSSIKIVKNPPESTLSELGVRSWPKWGCPPSKFPWTYSSRETCYLLE 92          
The following BLAST results are available for this feature:
BLAST of EWM24108.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105442|gb|EWM24108.1|5.789e-168100.00enzyme of the cupin superfamily [Nannochloropsis g... [more]
gi|553183770|ref|XP_005853963.1|2.245e-6896.30enzyme of the cupin superfamily [Nannochloropsis g... [more]
gi|470107904|ref|XP_004290278.1|7.714e-1438.71PREDICTED: uncharacterized protein LOC101291295 [F... [more]
gi|1191664060|gb|OTG16029.1|1.010e-1339.36putative rmlC-like jelly roll fold protein [Helian... [more]
gi|719988380|ref|XP_010252315.1|1.256e-1334.48PREDICTED: uncharacterized protein LOC104593919 [N... [more]
gi|566200345|ref|XP_006376102.1|1.857e-1350.00hypothetical protein POPTR_0013s09550g [Populus tr... [more]
gi|727566123|ref|XP_010455428.1|2.413e-1337.11PREDICTED: uncharacterized protein LOC104737030 [C... [more]
gi|743932373|ref|XP_011010474.1|2.647e-1350.68PREDICTED: uncharacterized protein LOC105115323 [P... [more]
gi|747045604|ref|XP_011095014.1|2.919e-1355.17uncharacterized protein LOC105174565 [Sesamum indi... [more]
gi|848913479|ref|XP_012854815.1|3.571e-1344.83PREDICTED: uncharacterized protein LOC105974294 [E... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6582rna6582Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications