rna6574, rna6574 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6574
Unique Name	rna6574
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1070
Alignment location	CM002468.1:825685..827235 +

Link to JBrowse

Properties


Property Name	Value
Product	Rubredoxin domain protein
Orig transcript id	gnl\|cribi\|Naga_100404g2.9935.mrna
Orig protein id	gnl\|cribi\|Naga_100404g2.9935
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:825685..827235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100404g2	gene6353	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6574	rna6574-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24114.1	cds6558	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:825685..827235+
coding sequence from alignment at CM002468.1:825685..827235+

mRNA sequence

>rna6574 ID=rna6574|Name=rna6574|organism=Nannochloropsis gaditana|type=mRNA|length=1070bp
TGGTGGATGAAGTTGAGGCTGTCTGTCGTGTTTGTGATTTGTGTCCATGG
TGCATAGCGGCATTTAGGACGAGTGGGGCGGCCTTGCAATGATTTTTAGG
GTGACTTCCCAAACGGGGACACATGAATCCCCTAGGACTCTTATACTCAT
TCGCGTTCCTCTCGCGTCCCGCGCACACGTCTTCGAACAGCGTACGCGAC
ATCTCTTCACAGCGAGTATGTCTCTGGTGGCTTTAAAGCGTACGGTCCGC
CCGGCCGCTACCCTTTGTGGTCGCCGCGCCATCCCCGCGCGCAATTTTGC
CGCCGGAGGACATGAAATCGAATCAGAAGATCACCAAGAATACGCATACG
TTAACCCCAAGTGGTTTGAGGGTCTTGAGGAGGGCATTCCTGTGGAGCAT
CCGCTGAAGATGGGCCTGCTCTTTCCCCCGAAGTTCACGGGCAAAAACGC
CCCCACTGCTGAGGAGTATTCCAGCGGAACGGTCAAAGTTCCCATCGTGG
TCGACTCCCTCGAGTGGACCCTCTCCTCTCCTCCCCCCCTCCATCAGTTT
GACGAGCCTCCCATCATTGTCGAGTTCCCCGAGGAGGATCACTGATCGCT
TTGTCCTCGCAGTCTTCCCTCTCCTCCTCCTGCTCCATCGTGGTCGGGCC
CGGGGGATGCAAAGGGAACAGGTCTGCCGGCTGAAGTTGCGTGGATAGGG
GAGATTTTTGTCATAATATACACCGTGGGAAAGCTGGGTAAAAGGGACTG
CAAGGAGGATCGAAGCTGGAAAGGCTCAAAGAGAGTTGGCCTTCGGATGG
ATGGCCGTGGGGTAGGCACAGAGGGGAAAAGAGGCAGGATTGGAAAGAAT
GGACTGCATTGGAAGACGATGTTGATGCCGTACATTTCTTTGCGAGAAAT
CGCTTAGTAAGGAAGCGAGTTTCTGTGACTAGAAAATGATGAACTTGCTC
CTGACTTTGACAGATGATTAAGCCTTGCTGATCAATGTTGATGTGCAATA
CAGCGACTGTCTCTAGGAAATTGCATGCATTTATGTTCTAGTCAAAACAT
GTTGCCATTTCACGCCCTCC

protein sequence of rna6574

>rna6574-protein ID=rna6574-protein|Name=rna6574|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MPSSTSRTILNVCLLLLVAFVSASAFFLPSSRVLSTGSNHALHKHVASRR
PLPSYAASEEGVKDTELIGPTAPPAPAVVEKAEEDMTEEEKAMKAKMDKI
KELKAKEVFQTQDTGDYECQVCGWQYKEEKGFGPYPAGTAFAALPADFKC
PNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFF
VLFLSGYLLE

mRNA from alignment at CM002468.1:825685..827235+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6574 ID=rna6574|Name=rna6574|organism=Nannochloropsis gaditana|type=mRNA|length=1551bp|location=Sequence derived from alignment at CM002468.1:825685..827235+ (Nannochloropsis gaditana)
ATGCCTTCATCCACTTCAAGGACCATCCTGAACGTCTGTTTATTACTCCT
GGTCGCTTTCGTGAGCGCTTcagctttcttcctcccttcttcccgggGTA
CGTACGTAAGACATTTGAGTGATCAAGTATTTGTGAATGTTCAGGTTTTT
ggtccttctttctctctttttgcCCTTCAGTCCTCTCCACCGGCAGCAAT
CACGCTCTTCACAAACATGTCGCATCGCGGAGACCATTGCCTTCGTACGC
CGCTTCCGAGGAAGGTGTAAAAGACACGGAATGTACGTGAGCCATGTCGA
TTCTACGGTGTCCTTACTGCCACGTTTCTCGTGATCTCTTGCTTTTCCCT
ggctccatctcccttcATATTCAGCTTTTGACTTTTTCAATTATCATTGT
TGCCCTCATGTCTCCTGTCTTGCTGATGTACCGTCCCAGTGATTGGGCCT
ACCgcacctcctgcccccgcggtggtggagaaggctgaggaagacatgac
ggaggaagagaaagcaatGAAGgtatggaaaggaaagaggggagacaggg
gaggtcggcggagggagaagcctAAAGGAACAGGCCTGGCTTCAGGCATA
AGCTTCTCTTCTCGAGCTTGGTTGCGCGTGGCATCATCTTGCGAGGACTA
ACAGCATGATTTTTTTTTGACAGGCAAAGATGGATAAGATCAAGGAGCTG
AAAGCCAAGGAGGTGTTCCAAACACAGGTGGGGAGCatagaaagggggga
aagagaaggaggaagggagggagggaaggagggggcgggggttGAGAAGA
TGAATGAGAGACAATATTCAGACACCATTGCAACATTTCTCATTCTTTGa
tttccctccgtccaccaTTTATTCTGCGCCTCATCGACAGGACACGGGCG
ATTATGAGTGCCAGGTCTGCGGATGGCagtacaaggaggagaagggcttT
GGCCCATATCCTGCCGGCACCGCCTTCGCCGCTCTGCCAGCCGACTTCAA
GTATGAGAGGAcgggcaaggagaaaaggaaggggattgGGAAGAGGCAAC
CGGTTCAGGACCTGGAGAAGAACCGCTGACAAACGTTTTTtgtcccctct
cttccactGCAGATGCCCGAATTGCAAAGCCGGAAAACCTGCCTTTAAGA
GCATGACCAAGACCATTGCCGGCTTCAGTGATAACTCCAAATACGGCTTT
GGTAAGATCAGCgagagtggaggagaagatagGCGCCCCCTGTGAAATCT
CGGCCCATATCAGGACGGGAAGACGCTTTATAGAACGTGGCCGAGGATCC
CTgcgtttctttttcctttcgtcGTGGCCCTTACTTTCCCTGCGCCTCCA
TGTATTTTTTCCACGTGGATACGTGTTCCCCAAATATAGCATCGTCCTCA
TGCGTATTTTTGTCACTTTTTCTGGATTCGGTATTTGTTAATTCAATGCA
CAGGCGGGAATAATTTGACGTCAGAACAAAAAGGTGGTTTGATCTTCGGC
GGACtgtttttcttctttgtccttTTCCTGAGTGGATATCTCCTGGAATG
A

Coding sequence (CDS) from alignment at CM002468.1:825685..827235+

>rna6574 ID=rna6574|Name=rna6574|organism=Nannochloropsis gaditana|type=CDS|length=4431bp|location=Sequence derived from alignment at CM002468.1:825685..827235+ (Nannochloropsis gaditana)
ATGCCTTCATCCACTTCAAGGACCATCCTGAACGTCTGTTTATTACTCCT
GGTCGCTTTCGTGAGCGCTTcagctttcttcctcccttcttcccgggTCC
TCTCCACCGGCAGCAATCACGCTCTTCACAAACATGTCGCATCGCGGAGA
CCATTGCCTTCGTACGCCGCTTCCGAGGAAGGTGTAAAAGACACGGAATT
GATTGGGCCTACCgcacctcctgcccccgcggtggtggagaaggctgagg
aagacatgacggaggaagagaaagcaatGAAGGCAAAGATGGATAAGATC
AAGGAGCTGAAAGCCAAGGAGGTGTTCCAAACACAGGACACGGGCGATTA
TGAGTGCCAGGTCTGCGGATGGCagtacaaggaggagaagggcttTGGCC
CATATCCTGCCGGCACCGCCTTCGCCGCTCTGCCAGCCGACTTCAAATGC
CCGAATTGCAAAGCCGGAAAACCTGCCTTTAAGAGCATGACCAAGACCAT
TGCCGGCTTCAGTGATAACTCCAAATACGGCTTTGGCGGGAATAATTTGA
CGTCAGAACAAAAAGGTGGTTTGATCTTCGGCGGACtgtttttcttcttt
gtccttTTCCTGAGTGGATATCTCCTGGAATGAATGCCTTCATCCACTTC
AAGGACCATCCTGAACGTCTGTTTATTACTCCTGGTCGCTTTCGTGAGCG
CTTcagctttcttcctcccttcttcccgggTCCTCTCCACCGGCAGCAAT
CACGCTCTTCACAAACATGTCGCATCGCGGAGACCATTGCCTTCGTACGC
CGCTTCCGAGGAAGGTGTAAAAGACACGGAATTGATTGGGCCTACCgcac
ctcctgcccccgcggtggtggagaaggctgaggaagacatgacggaggaa
gagaaagcaatGAAGGCAAAGATGGATAAGATCAAGGAGCTGAAAGCCAA
GGAGGTGTTCCAAACACAGGACACGGGCGATTATGAGTGCCAGGTCTGCG
GATGGCagtacaaggaggagaagggcttTGGCCCATATCCTGCCGGCACC
GCCTTCGCCGCTCTGCCAGCCGACTTCAAATGCCCGAATTGCAAAGCCGG
AAAACCTGCCTTTAAGAGCATGACCAAGACCATTGCCGGCTTCAGTGATA
ACTCCAAATACGGCTTTGGCGGGAATAATTTGACGTCAGAACAAAAAGGT
GGTTTGATCTTCGGCGGACtgtttttcttctttgtccttTTCCTGAGTGG
ATATCTCCTGGAATGAATGCCTTCATCCACTTCAAGGACCATCCTGAACG
TCTGTTTATTACTCCTGGTCGCTTTCGTGAGCGCTTcagctttcttcctc
ccttcttcccgggTCCTCTCCACCGGCAGCAATCACGCTCTTCACAAACA
TGTCGCATCGCGGAGACCATTGCCTTCGTACGCCGCTTCCGAGGAAGGTG
TAAAAGACACGGAATTGATTGGGCCTACCgcacctcctgcccccgcggtg
gtggagaaggctgaggaagacatgacggaggaagagaaagcaatGAAGGC
AAAGATGGATAAGATCAAGGAGCTGAAAGCCAAGGAGGTGTTCCAAACAC
AGGACACGGGCGATTATGAGTGCCAGGTCTGCGGATGGCagtacaaggag
gagaagggcttTGGCCCATATCCTGCCGGCACCGCCTTCGCCGCTCTGCC
AGCCGACTTCAAATGCCCGAATTGCAAAGCCGGAAAACCTGCCTTTAAGA
GCATGACCAAGACCATTGCCGGCTTCAGTGATAACTCCAAATACGGCTTT
GGCGGGAATAATTTGACGTCAGAACAAAAAGGTGGTTTGATCTTCGGCGG
ACtgtttttcttctttgtccttTTCCTGAGTGGATATCTCCTGGAATGAA
TGCCTTCATCCACTTCAAGGACCATCCTGAACGTCTGTTTATTACTCCTG
GTCGCTTTCGTGAGCGCTTcagctttcttcctcccttcttcccgggTCCT
CTCCACCGGCAGCAATCACGCTCTTCACAAACATGTCGCATCGCGGAGAC
CATTGCCTTCGTACGCCGCTTCCGAGGAAGGTGTAAAAGACACGGAATTG
ATTGGGCCTACCgcacctcctgcccccgcggtggtggagaaggctgagga
agacatgacggaggaagagaaagcaatGAAGGCAAAGATGGATAAGATCA
AGGAGCTGAAAGCCAAGGAGGTGTTCCAAACACAGGACACGGGCGATTAT
GAGTGCCAGGTCTGCGGATGGCagtacaaggaggagaagggcttTGGCCC
ATATCCTGCCGGCACCGCCTTCGCCGCTCTGCCAGCCGACTTCAAATGCC
CGAATTGCAAAGCCGGAAAACCTGCCTTTAAGAGCATGACCAAGACCATT
GCCGGCTTCAGTGATAACTCCAAATACGGCTTTGGCGGGAATAATTTGAC
GTCAGAACAAAAAGGTGGTTTGATCTTCGGCGGACtgtttttcttctttg
tccttTTCCTGAGTGGATATCTCCTGGAATGAATGCCTTCATCCACTTCA
AGGACCATCCTGAACGTCTGTTTATTACTCCTGGTCGCTTTCGTGAGCGC
TTcagctttcttcctcccttcttcccgggTCCTCTCCACCGGCAGCAATC
ACGCTCTTCACAAACATGTCGCATCGCGGAGACCATTGCCTTCGTACGCC
GCTTCCGAGGAAGGTGTAAAAGACACGGAATTGATTGGGCCTACCgcacc
tcctgcccccgcggtggtggagaaggctgaggaagacatgacggaggaag
agaaagcaatGAAGGCAAAGATGGATAAGATCAAGGAGCTGAAAGCCAAG
GAGGTGTTCCAAACACAGGACACGGGCGATTATGAGTGCCAGGTCTGCGG
ATGGCagtacaaggaggagaagggcttTGGCCCATATCCTGCCGGCACCG
CCTTCGCCGCTCTGCCAGCCGACTTCAAATGCCCGAATTGCAAAGCCGGA
AAACCTGCCTTTAAGAGCATGACCAAGACCATTGCCGGCTTCAGTGATAA
CTCCAAATACGGCTTTGGCGGGAATAATTTGACGTCAGAACAAAAAGGTG
GTTTGATCTTCGGCGGACtgtttttcttctttgtccttTTCCTGAGTGGA
TATCTCCTGGAATGAATGCCTTCATCCACTTCAAGGACCATCCTGAACGT
CTGTTTATTACTCCTGGTCGCTTTCGTGAGCGCTTcagctttcttcctcc
cttcttcccgggTCCTCTCCACCGGCAGCAATCACGCTCTTCACAAACAT
GTCGCATCGCGGAGACCATTGCCTTCGTACGCCGCTTCCGAGGAAGGTGT
AAAAGACACGGAATTGATTGGGCCTACCgcacctcctgcccccgcggtgg
tggagaaggctgaggaagacatgacggaggaagagaaagcaatGAAGGCA
AAGATGGATAAGATCAAGGAGCTGAAAGCCAAGGAGGTGTTCCAAACACA
GGACACGGGCGATTATGAGTGCCAGGTCTGCGGATGGCagtacaaggagg
agaagggcttTGGCCCATATCCTGCCGGCACCGCCTTCGCCGCTCTGCCA
GCCGACTTCAAATGCCCGAATTGCAAAGCCGGAAAACCTGCCTTTAAGAG
CATGACCAAGACCATTGCCGGCTTCAGTGATAACTCCAAATACGGCTTTG
GCGGGAATAATTTGACGTCAGAACAAAAAGGTGGTTTGATCTTCGGCGGA
CtgtttttcttctttgtccttTTCCTGAGTGGATATCTCCTGGAATGAAT
GCCTTCATCCACTTCAAGGACCATCCTGAACGTCTGTTTATTACTCCTGG
TCGCTTTCGTGAGCGCTTcagctttcttcctcccttcttcccgggTCCTC
TCCACCGGCAGCAATCACGCTCTTCACAAACATGTCGCATCGCGGAGACC
ATTGCCTTCGTACGCCGCTTCCGAGGAAGGTGTAAAAGACACGGAATTGA
TTGGGCCTACCgcacctcctgcccccgcggtggtggagaaggctgaggaa
gacatgacggaggaagagaaagcaatGAAGGCAAAGATGGATAAGATCAA
GGAGCTGAAAGCCAAGGAGGTGTTCCAAACACAGGACACGGGCGATTATG
AGTGCCAGGTCTGCGGATGGCagtacaaggaggagaagggcttTGGCCCA
TATCCTGCCGGCACCGCCTTCGCCGCTCTGCCAGCCGACTTCAAATGCCC
GAATTGCAAAGCCGGAAAACCTGCCTTTAAGAGCATGACCAAGACCATTG
CCGGCTTCAGTGATAACTCCAAATACGGCTTTGGCGGGAATAATTTGACG
TCAGAACAAAAAGGTGGTTTGATCTTCGGCGGACtgtttttcttctttgt
ccttTTCCTGAGTGGATATCTCCTGGAATGA

Synonyms

Publications