EWM24114.1, cds6558 (CDS) Nannochloropsis gaditana

Overview
NameEWM24114.1
Unique Namecds6558
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:825685..825781 +
Alignment locationCM002468.1:825865..825966 +
Alignment locationCM002468.1:826124..826206 +
Alignment locationCM002468.1:826358..826411 +
Alignment locationCM002468.1:826575..826684 +
Alignment locationCM002468.1:826797..826885 +
Alignment locationCM002468.1:827138..827235 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24114.1
ProductRubredoxin domain protein
Orig transcript idgnl|cribi|Naga_100404g2.9935.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:825685..825781 +
CM002468.1supercontigCM002468.1:825865..825966 +
CM002468.1supercontigCM002468.1:826124..826206 +
CM002468.1supercontigCM002468.1:826358..826411 +
CM002468.1supercontigCM002468.1:826575..826684 +
CM002468.1supercontigCM002468.1:826797..826885 +
CM002468.1supercontigCM002468.1:827138..827235 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005506iron ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR024934Rubredoxin-like_dom
IPR004039Rubredoxin-type_fold
IPR024935Rubredoxin_dom
Homology
BLAST of EWM24114.1 vs. NCBI_GenBank
Match: gi|553182036|ref|XP_005853668.1| (rubredoxin-type fe 4 protein [Nannochloropsis gaditana CCMP526] >gi|422295393|gb|EKU22692.1| rubredoxin-type fe 4 protein [Nannochloropsis gaditana CCMP526] >gi|585105451|gb|EWM24114.1| Rubredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 431.409 bits (1108), Expect = 6.249e-153
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
Query:    1 MPSSTSRTILNVCLLLLVAFVSASAFFLPSSRVLSTGSNHALHKHVASRRPLPSYAASEEGVKDTELIGPTAPPAPAVVEKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGFGPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLLE 210
            MPSSTSRTILNVCLLLLVAFVSASAFFLPSSRVLSTGSNHALHKHVASRRPLPSYAASEEGVKDTELIGPTAPPAPAVVEKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGFGPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLLE
Sbjct:    1 MPSSTSRTILNVCLLLLVAFVSASAFFLPSSRVLSTGSNHALHKHVASRRPLPSYAASEEGVKDTELIGPTAPPAPAVVEKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGFGPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLLE 210          
BLAST of EWM24114.1 vs. NCBI_GenBank
Match: gi|298709740|emb|CBJ31543.1| (Rubredoxin [Ectocarpus siliculosus])

HSP 1 Score: 139.043 bits (349), Expect = 1.945e-37
Identity = 76/135 (56.30%), Postives = 91/135 (67.41%), Query Frame = 0
Query:   77 AVVEKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYK-EEKGFGPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLLE 210
            AVVE  E+ +TE E A KAKM++I+ L+AKE F T  TGD+EC  CG+ YK E  G G  P GT F  LP+ + CP CKA K  F + TKTIAGF DN+ YG G N +T  QK  LIFG LF FFVLFL+GY L+
Sbjct:   99 AVVE--EKPLTEAELAQKAKMEEIERLRAKEKFTTVKTGDHECLQCGFVYKPENAGQGALP-GTQFDDLPSTWICPVCKAPKDTFFAQTKTIAGFEDNANYGLGANQMTGSQKNLLIFGSLFAFFVLFLAGYALD 230          
BLAST of EWM24114.1 vs. NCBI_GenBank
Match: gi|1189392324|gb|OSX79237.1| (hypothetical protein BU14_0082s0002 [Porphyra umbilicalis])

HSP 1 Score: 136.732 bits (343), Expect = 7.123e-37
Identity = 73/169 (43.20%), Postives = 95/169 (56.21%), Query Frame = 0
Query:   43 HKHVASRRPLPSYAASEEGVKDTELIGPTAPPAPAVVEKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKG--FGPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLL 209
            H+  A   P+ S A   +   D + +         V   A  ++ EEE     K  +I  LKA E F   D G++EC  CG+ Y + KG       +GT FA LP+DF CP+CK  K AF+ +TK IAGF+DN  YGFG N+LT  QK  LI+GGL  FF+LFLSGYL+
Sbjct:   44 HRRAARHTPVASAAEPGDRTPDGDEV--------VVASAASGNVAEEEDTRSEKQKEIDRLKAAEKFIEVDEGNFECPTCGYVYVKSKGEFLSGVKSGTEFADLPSDFTCPSCKTPKSAFRPITKVIAGFADNQSYGFGTNSLTGGQKSALIYGGLAVFFLLFLSGYLI 204          
BLAST of EWM24114.1 vs. NCBI_GenBank
Match: gi|219129650|ref|XP_002184996.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403491|gb|EEC43443.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 121.324 bits (303), Expect = 8.446e-32
Identity = 60/129 (46.51%), Postives = 84/129 (65.12%), Query Frame = 0
Query:   86 MTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGF-----GPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLL 209
            M+ +E+A++AK  +  EL+A+EVF  + TG ++C  C W++  EKG      G    GT FA LP++++CP C+A K AF+ + + I GF  N  YGFG N+ TSEQK   IFGGL  FF+LFLSGY +
Sbjct:    1 MSADERAIRAKQKRADELRAQEVFMKKSTGKHKCTNCDWEFDVEKGDSNMIGGMIKPGTPFAELPSNWRCPVCRASKDAFEEVVEEIPGFEVNQGYGFGTNSWTSEQKNLAIFGGLAAFFLLFLSGYAM 129          
BLAST of EWM24114.1 vs. NCBI_GenBank
Match: gi|1072238007|gb|OEU22734.1| (rubredoxin, rubredoxin-type Fe4 protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 119.013 bits (297), Expect = 8.957e-31
Identity = 59/131 (45.04%), Postives = 81/131 (61.83%), Query Frame = 0
Query:   84 EDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGF-----GPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLL 209
            E+M ++++AM  K  +  EL+ +EVF    TG ++C  C W+Y E KG      G   AGT F A+P+D++CP C+A K AF  + + I GF  N  YGFG N+ ++ QK   IFGGL  FFVLFLSGY +
Sbjct:    2 EEMDDKQRAMLEKQARNDELREQEVFMKISTGKHQCSNCDWEYDEVKGDSMMIGGMIKAGTKFDAMPSDWRCPVCRASKDAFVEIAEEIPGFEVNQGYGFGANSWSAGQKNAAIFGGLAAFFVLFLSGYAM 132          
BLAST of EWM24114.1 vs. NCBI_GenBank
Match: gi|397621011|gb|EJK66055.1| (hypothetical protein THAOC_13041 [Thalassiosira oceanica])

HSP 1 Score: 119.013 bits (297), Expect = 5.057e-30
Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = 0
Query:   77 AVVEKAEEDMTEEE---KAMKAKMDKIK---ELKAKEVFQTQDTGDYECQVCGWQYKEEKGF-----GPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLL 209
            AV E+A+ED  + E   +A + +++K K   EL+A+EVF  + TG Y C+ C W+Y  EKG      G    GTAF   P++++CP C+A K  F+ + +TI GF  N  YGFG N++T+ +K  LI+GGL  FF LFL GY L
Sbjct:   55 AVAEQAQEDEADAEPVDEATRLQLEKQKRADELRAQEVFMKRTTGVYVCKSCDWEYDPEKGDSFLIGGMIKPGTAFEDTPSNWRCPTCRASKDQFEEVVETIPGFEVNQGYGFGTNSMTTGEKNTLIWGGLAAFFALFLGGYAL 198          
BLAST of EWM24114.1 vs. NCBI_GenBank
Match: gi|1004148981|gb|KXZ56953.1| (hypothetical protein GPECTOR_1g86 [Gonium pectorale])

HSP 1 Score: 116.701 bits (291), Expect = 1.480e-29
Identity = 65/148 (43.92%), Postives = 85/148 (57.43%), Query Frame = 0
Query:   70 PTAPPAPAV-----VEKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGFG--PYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLLE 210
            P A P P +     V  A E  TE     + K  + ++L+A E F    +GD  C+ CG++YK EKG    P P G  F ALP D+ CP C A K  F+S  K +AGF++N +YG GGN++T  QK  LI+G L  FF LFL+GY LE
Sbjct:   21 PVAIPRPILARDTRVRSAPEAETEFLSETERKKAEAEKLRAAEKFMVLGSGDATCKGCGYEYKPEKGDPEFPVPPGVTFQALPEDYVCPICGAPKSQFESRMKVVAGFAENQRYGLGGNSMTEGQKSLLIYGSLAVFFALFLAGYALE 168          
BLAST of EWM24114.1 vs. NCBI_GenBank
Match: gi|302845527|ref|XP_002954302.1| (hypothetical protein VOLCADRAFT_82726 [Volvox carteri f. nagariensis] >gi|300260507|gb|EFJ44726.1| hypothetical protein VOLCADRAFT_82726 [Volvox carteri f. nagariensis])

HSP 1 Score: 116.316 bits (290), Expect = 2.167e-29
Identity = 68/162 (41.98%), Postives = 93/162 (57.41%), Query Frame = 0
Query:   51 PLPSYAASEEGVKDTELIGPTAPPAPAVVEKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGFG--PYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLLE 210
            P P+  A+   V   ++   ++P      E   E +TE E+  KA+ DK   L+A E F    +G   C+ CG++YK EKG    P P G  F ALP D+ CP C A K  F+S  K +AGF++N +YG GGN++T  QK  LI+G L  FFVLFL+GY L+
Sbjct:   16 PRPAVTATPRHVVSRDIRLRSSP------ETDTEFLTEAERK-KAEADK---LRAAEKFMVIGSGSATCKGCGYEYKPEKGDPEFPVPPGVTFQALPDDYVCPICGAPKLKFESRAKVVAGFAENQRYGLGGNSMTESQKSLLIYGALAVFFVLFLAGYALD 167          
BLAST of EWM24114.1 vs. NCBI_GenBank
Match: gi|670368860|ref|XP_008665633.1| (uncharacterized protein LOC103644215 [Zea mays] >gi|1142641472|gb|ONM10535.1| Rubredoxin-like superfamily protein [Zea mays])

HSP 1 Score: 116.316 bits (290), Expect = 9.449e-29
Identity = 67/177 (37.85%), Postives = 96/177 (54.24%), Query Frame = 0
Query:   38 SNHALH-KHVASRRPL-PSYAASEEGVKDTELIGPTAPPAPAVVEKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGFGPYPA--GTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLLE 210
            S++ LH  H+   RP+  S+  +   V  T+   P  P  PA  E       E+E        K+   + +E F   +TG +ECQ CG++Y +  G   YP   G  FA LP D++CP C A +  F+S +  IAGF+ N ++G GGN+LTS QKG LI+G L   F+ F+SGY L+
Sbjct:   41 SSYCLHLHHILYLRPVASSHHLTRHSVDVTKDDKPLEPLPPAAAETESTQQQEDEDGGP----KLDPRRFEEKFAVLNTGVHECQSCGYRYDQAAGDPSYPVPPGLPFAQLPDDWRCPTCGAAQSFFESKSVEIAGFAQNQQFGLGGNSLTSGQKGLLIYGSLLIGFLFFISGYFLQ 213          
BLAST of EWM24114.1 vs. NCBI_GenBank
Match: gi|922856819|gb|KOO25136.1| (rubredoxin-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 112.849 bits (281), Expect = 8.778e-28
Identity = 66/168 (39.29%), Postives = 86/168 (51.19%), Query Frame = 0
Query:   42 LHKHVASRRPLPSYAASEEGVKDTELIGPTAPPAPAVVEKAEEDMTEEEKAMKAKMDKIKELKAKEVFQTQDTGDYECQVCGWQYKEEKGFGPYPAGTAFAALPADFKCPNCKAGKPAFKSMTKTIAGFSDNSKYGFGGNNLTSEQKGGLIFGGLFFFFVLFLSGYLL 209
            L +H  + R    +A  EE V         +      +   E ++TE EK       +I  L+A E F  + TG+ +C  CG++YK E+G    P  T F  +P  + CPNCK+ K  F + T  IAGF DN KYGFG N  T  QK   IFGGL  FF LF+SGY L
Sbjct:   23 LARHGTALRRAAVHAKEEEVVFTFGDADDMSDSTATAIMGEERELTEREK-------EIARLRAAEKFIQKATGNAKCNTCGYKYKWEEGAPGIPKRTPFELVPDSWSCPNCKSPKAFFAAETIEIAGFEDNQKYGFGTNTWTESQKSTAIFGGLAAFFALFISGYAL 183          
The following BLAST results are available for this feature:
BLAST of EWM24114.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553182036|ref|XP_005853668.1|6.249e-153100.00rubredoxin-type fe 4 protein [Nannochloropsis gadi... [more]
gi|298709740|emb|CBJ31543.1|1.945e-3756.30Rubredoxin [Ectocarpus siliculosus][more]
gi|1189392324|gb|OSX79237.1|7.123e-3743.20hypothetical protein BU14_0082s0002 [Porphyra umbi... [more]
gi|219129650|ref|XP_002184996.1|8.446e-3246.51predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072238007|gb|OEU22734.1|8.957e-3145.04rubredoxin, rubredoxin-type Fe4 protein [Fragilari... [more]
gi|397621011|gb|EJK66055.1|5.057e-3043.75hypothetical protein THAOC_13041 [Thalassiosira oc... [more]
gi|1004148981|gb|KXZ56953.1|1.480e-2943.92hypothetical protein GPECTOR_1g86 [Gonium pectoral... [more]
gi|302845527|ref|XP_002954302.1|2.167e-2941.98hypothetical protein VOLCADRAFT_82726 [Volvox cart... [more]
gi|670368860|ref|XP_008665633.1|9.449e-2937.85uncharacterized protein LOC103644215 [Zea mays] >g... [more]
gi|922856819|gb|KOO25136.1|8.778e-2839.29rubredoxin-like protein [Chrysochromulina sp. CCMP... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6574rna6574Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications