rna6572, rna6572 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6572
Unique Name	rna6572
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	928
Alignment location	CM002468.1:818545..820531 +

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Properties


Property Name	Value
Product	peptide methionine sulfoxide reductase
Orig transcript id	gnl\|cribi\|Naga_100404g4.9937.mrna
Orig protein id	gnl\|cribi\|Naga_100404g4.9937
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:818545..820531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100404g4	gene6351	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6572	rna6572-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24116.1	cds6556	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:818545..820531+
coding sequence from alignment at CM002468.1:818545..820531+

mRNA sequence

>rna6572 ID=rna6572|Name=rna6572|organism=Nannochloropsis gaditana|type=mRNA|length=928bp
ATGCTACGCGATTGCCTGGAATTTAGACCGGGCTGCTTCTTCCCGCTCCT
CATAGTCCGGGGACGCAATTTCATGCGCCACGTAAGTTTGTCCGTTTTTC
TAGTCCACTACGTCATTGCAAGTATTTCCGCTTCGTGGGCCGGGCAAATA
GCTGAAAAGGCAGGGGAATTCCTAGAAAACTCCTTACAAATGGGACAAGG
GATGGCCACAGGAAAACCATTCGGGGAGTCCGCGGCTAAAGTTGTGAGCA
AGGTATTTTCTACGGAAAGTGCCAACGTCAAGGCCTCATGCTCGTGGGGT
CAGGAGGTTGCTACTTTTGCCGCTGGATGCTTTTGGTCAGTCGAGCTTTC
TTTTCAACGAGTCCCTGGGGTGGCCTCCACCCGTGTAGGGTATACAGGGG
GAAGCGTGCCACACCCTTCGTATAAAGAGGTTTGCACAGGGAGGACTGGA
CATGCTGAGGCTGTGGAGATAAAATTCGATCCTTCCATAGTCACGTATCC
GGAGCTCTTGACGGTTTTATGGGATCGGCACGACCCCACCCAGAAGGACA
GGCAGGGAAACGACCGGGGGACGCAGTATCGTTCGGCGATTTTTTATCAT
TCGCCCGAGCAGAAATCACAAGCTGAAGCGGCCATTAAGCAAGAGCAAAA
GCGCCGGTCGATGCCAATTGTGACGCAACTTGTGCCTGCAACGACATTCT
ACGAGGCCGAGACTTACCACCAGCAATACCTGGAGAAGGGGGGTCAGTGC
GCGCGAAAGGGAGATTTAACTCCGATTCGATGCTACGGCTGAGAAGTACA
TGTTAAAGACAAAATGACCGCAAGGCAGAGAGGGGTTGATATATTGATTT
CGGGGGAAAATGTGAGCGTGGGATGCGACAAAAGACGGAAAATTAAGGGA
AGAACAAATGAAGCTATGCGTCAGCTAT

protein sequence of rna6572

>rna6572-protein ID=rna6572-protein|Name=rna6572|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQI
AEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWG
QEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTG
HAEAVEIKFDPSIEGQAGKRPGDAVSFGDFLSFARAEITS

mRNA from alignment at CM002468.1:818545..820531+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6572 ID=rna6572|Name=rna6572|organism=Nannochloropsis gaditana|type=mRNA|length=1987bp|location=Sequence derived from alignment at CM002468.1:818545..820531+ (Nannochloropsis gaditana)
ATGCTACGCGATTGCCTGGAATTTAGACCGGGCTGTGACGTGAACGTTTT
GTTCTCATATCATTGCCCAAGCTGGTGCACACCAGCATCGGAACAAAGGG
ACAATTTCGTCCGTAGTGTGTGGTATCGTCGCTCAATCTTCAAGTCATGC
GACCTTCATAAAATGGTCGTGCGTTTATGAAATATTTCATGTCTCCAGCT
ATGATGCTCCTGACACTTTCGTTTCTACTGCTACAGGcttcttcccgctc
ctcATAGTCCGGGGACGCAATTTCATGCGCCACGTAAGTTTGTCCGTTTT
TCTAGTCCACTACGTCATTGCAAGTATTTCCGCTTCGTGGGCCGGGCAAA
TAGCTGAAAAGGCAGGGGAATTCCTAGAAAACTCCTTACAAATGGGACAA
GGGATGGCCACAGGAAAACCATTCGGGGAGTCCGCGGCTAAAGTTGTGAG
CAAGGTATTTTCTACGGAAAGTGCCAACGTCAAGGCCTCATGCTCGTGGG
GTCAGGAGGTTGCTACTTTTGCCGCTGGATGCTTTTGGTCAGGTTGGTGC
ACCTACAGGCCACTAGCATTGAATACCTTCCCTTTATATTTTGTATCAGC
ATCTTGACGCGTTTGCCTTGGTAAAAAGCATTTTCAGTGTCCCGCTCCTA
GCCGTAGCGCACGTTCCCAGTCATCGTCTCTTTCCTATCGCCCGAGACCC
GAAGTATAATGCCCCATTATGCACGGCGTATCCCTCCATGAGGCCGTAGT
CAAAATCCAAGCTGTCCTCTCATTAgcccctccatgtcctccctttccct
cccagtcGAGCTTTCTTTTCAACGAGTCCCTGGGGTGGCCTCCACCCGTG
TAGGGTATACAGGGGGAAGCGTGCCACACCCTTCGTATAAAGAGGTTTGC
ACAGGGAGGACTGGACATGCTGAGGCTGTGGAGATAAAATTCGATCCTTC
CATAGGTAGGGAGGAATTGCGGGCGAAGGAAACAAAGGGAGGTCATTATC
GCAAGCATGTCCAGTGCCCCTCTTTTCGGAACTAGCATCTCCACCAACCA
TCAACCACCTAAAGTTAGCCACGCCAGACTTCTTTACTTTTTGTCTCTGA
CGTATCCTTGCTTTTCCCTCGTCGTCGCTCTCCTCGTAGTCACGTATCCG
GAGCTCTTGACGGTTTTATGGGATCGGCACGACCCCACCCAGAAGGACAG
GCAGGGAAACGACCGGGGGACGCAGTATCGTTCGGCGTGAGTGGAGGGGC
AGTGGGAGCAACGCaagcaagaagaaagagggcttgGACGGGATCGAATT
TCTCCCAGGAATACGGCATGGAAGGGTACCGCGATCATATGCCTTCCTTG
TGGCAATGAGGGGGGAAACTGGATTTGTTATGATGATTATACGCACTGGA
ATTTATTCTCCTCCATATATCCTTGCACCCTTCAACATGTTTCCGAACCA
CGTGCATACTGATTTGTTGGGGGTCTCTGTTTTCGTAGGATTTTTTATCA
TTCGCCCGAGCAGAAATCACAAGCTGAAGCGGCCATTAAGCAAGAGCAAA
AGCGCCGGTCGATGCCAATTGTGACGCAACTTGTGCCTGCAACGACATTC
TACGAGGCCGAGGTAAATAAAGATAAATTATCACTAGGATATCAGTTGCG
AAGGGCAAGAAGCGGGAATCCTGTCATTTAGGGAAACATTTTACAGGGAA
GATGTGAGTCTTCTAGAACGCTCACTTACCATCAGGGCAATGTTTCCATC
GTTTCCTCTCCATTTGTCAGACTTACCACCAGCAATacctggagaagggg
ggtCAGTGCGCGCGAAAGGGAGATTTAACTCCGATTCGATGCTACGGCTG
AGAAGTACATGTTAAAGACAAAATGACCgcaaggcagagaggggtTGATA
TATTGATTTCGGGGGAAAATGTGAGCGTGGGATGCGACAAAAGACGGAAA
ATTAAGGGAAGAACAAATGAAGCTATGCGTCAGCTAT

Coding sequence (CDS) from alignment at CM002468.1:818545..820531+

>rna6572 ID=rna6572|Name=rna6572|organism=Nannochloropsis gaditana|type=CDS|length=2865bp|location=Sequence derived from alignment at CM002468.1:818545..820531+ (Nannochloropsis gaditana)
ATGCTACGCGATTGCCTGGAATTTAGACCGGGCTGcttcttcccgctcct
cATAGTCCGGGGACGCAATTTCATGCGCCACGTAAGTTTGTCCGTTTTTC
TAGTCCACTACGTCATTGCAAGTATTTCCGCTTCGTGGGCCGGGCAAATA
GCTGAAAAGGCAGGGGAATTCCTAGAAAACTCCTTACAAATGGGACAAGG
GATGGCCACAGGAAAACCATTCGGGGAGTCCGCGGCTAAAGTTGTGAGCA
AGGTATTTTCTACGGAAAGTGCCAACGTCAAGGCCTCATGCTCGTGGGGT
CAGGAGGTTGCTACTTTTGCCGCTGGATGCTTTTGGTCAGtcGAGCTTTC
TTTTCAACGAGTCCCTGGGGTGGCCTCCACCCGTGTAGGGTATACAGGGG
GAAGCGTGCCACACCCTTCGTATAAAGAGGTTTGCACAGGGAGGACTGGA
CATGCTGAGGCTGTGGAGATAAAATTCGATCCTTCCATAGAAGGACAGGC
AGGGAAACGACCGGGGGACGCAGTATCGTTCGGCGATTTTTTATCATTCG
CCCGAGCAGAAATCACAAGCTGAATGCTACGCGATTGCCTGGAATTTAGA
CCGGGCTGcttcttcccgctcctcATAGTCCGGGGACGCAATTTCATGCG
CCACGTAAGTTTGTCCGTTTTTCTAGTCCACTACGTCATTGCAAGTATTT
CCGCTTCGTGGGCCGGGCAAATAGCTGAAAAGGCAGGGGAATTCCTAGAA
AACTCCTTACAAATGGGACAAGGGATGGCCACAGGAAAACCATTCGGGGA
GTCCGCGGCTAAAGTTGTGAGCAAGGTATTTTCTACGGAAAGTGCCAACG
TCAAGGCCTCATGCTCGTGGGGTCAGGAGGTTGCTACTTTTGCCGCTGGA
TGCTTTTGGTCAGtcGAGCTTTCTTTTCAACGAGTCCCTGGGGTGGCCTC
CACCCGTGTAGGGTATACAGGGGGAAGCGTGCCACACCCTTCGTATAAAG
AGGTTTGCACAGGGAGGACTGGACATGCTGAGGCTGTGGAGATAAAATTC
GATCCTTCCATAGAAGGACAGGCAGGGAAACGACCGGGGGACGCAGTATC
GTTCGGCGATTTTTTATCATTCGCCCGAGCAGAAATCACAAGCTGAATGC
TACGCGATTGCCTGGAATTTAGACCGGGCTGcttcttcccgctcctcATA
GTCCGGGGACGCAATTTCATGCGCCACGTAAGTTTGTCCGTTTTTCTAGT
CCACTACGTCATTGCAAGTATTTCCGCTTCGTGGGCCGGGCAAATAGCTG
AAAAGGCAGGGGAATTCCTAGAAAACTCCTTACAAATGGGACAAGGGATG
GCCACAGGAAAACCATTCGGGGAGTCCGCGGCTAAAGTTGTGAGCAAGGT
ATTTTCTACGGAAAGTGCCAACGTCAAGGCCTCATGCTCGTGGGGTCAGG
AGGTTGCTACTTTTGCCGCTGGATGCTTTTGGTCAGtcGAGCTTTCTTTT
CAACGAGTCCCTGGGGTGGCCTCCACCCGTGTAGGGTATACAGGGGGAAG
CGTGCCACACCCTTCGTATAAAGAGGTTTGCACAGGGAGGACTGGACATG
CTGAGGCTGTGGAGATAAAATTCGATCCTTCCATAGAAGGACAGGCAGGG
AAACGACCGGGGGACGCAGTATCGTTCGGCGATTTTTTATCATTCGCCCG
AGCAGAAATCACAAGCTGAATGCTACGCGATTGCCTGGAATTTAGACCGG
GCTGcttcttcccgctcctcATAGTCCGGGGACGCAATTTCATGCGCCAC
GTAAGTTTGTCCGTTTTTCTAGTCCACTACGTCATTGCAAGTATTTCCGC
TTCGTGGGCCGGGCAAATAGCTGAAAAGGCAGGGGAATTCCTAGAAAACT
CCTTACAAATGGGACAAGGGATGGCCACAGGAAAACCATTCGGGGAGTCC
GCGGCTAAAGTTGTGAGCAAGGTATTTTCTACGGAAAGTGCCAACGTCAA
GGCCTCATGCTCGTGGGGTCAGGAGGTTGCTACTTTTGCCGCTGGATGCT
TTTGGTCAGtcGAGCTTTCTTTTCAACGAGTCCCTGGGGTGGCCTCCACC
CGTGTAGGGTATACAGGGGGAAGCGTGCCACACCCTTCGTATAAAGAGGT
TTGCACAGGGAGGACTGGACATGCTGAGGCTGTGGAGATAAAATTCGATC
CTTCCATAGAAGGACAGGCAGGGAAACGACCGGGGGACGCAGTATCGTTC
GGCGATTTTTTATCATTCGCCCGAGCAGAAATCACAAGCTGAATGCTACG
CGATTGCCTGGAATTTAGACCGGGCTGcttcttcccgctcctcATAGTCC
GGGGACGCAATTTCATGCGCCACGTAAGTTTGTCCGTTTTTCTAGTCCAC
TACGTCATTGCAAGTATTTCCGCTTCGTGGGCCGGGCAAATAGCTGAAAA
GGCAGGGGAATTCCTAGAAAACTCCTTACAAATGGGACAAGGGATGGCCA
CAGGAAAACCATTCGGGGAGTCCGCGGCTAAAGTTGTGAGCAAGGTATTT
TCTACGGAAAGTGCCAACGTCAAGGCCTCATGCTCGTGGGGTCAGGAGGT
TGCTACTTTTGCCGCTGGATGCTTTTGGTCAGtcGAGCTTTCTTTTCAAC
GAGTCCCTGGGGTGGCCTCCACCCGTGTAGGGTATACAGGGGGAAGCGTG
CCACACCCTTCGTATAAAGAGGTTTGCACAGGGAGGACTGGACATGCTGA
GGCTGTGGAGATAAAATTCGATCCTTCCATAGAAGGACAGGCAGGGAAAC
GACCGGGGGACGCAGTATCGTTCGGCGATTTTTTATCATTCGCCCGAGCA
GAAATCACAAGCTGA

Synonyms

Publications