EWM24116.1, cds6556 (CDS) Nannochloropsis gaditana

Overview
NameEWM24116.1
Unique Namecds6556
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:818545..818578 +
Alignment locationCM002468.1:818781..819086 +
Alignment locationCM002468.1:819350..819499 +
Alignment locationCM002468.1:819737..819780 +
Alignment locationCM002468.1:820033..820071 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24116.1
Productpeptide methionine sulfoxide reductase
Orig transcript idgnl|cribi|Naga_100404g4.9937.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:818545..818578 +
CM002468.1supercontigCM002468.1:818781..819086 +
CM002468.1supercontigCM002468.1:819350..819499 +
CM002468.1supercontigCM002468.1:819737..819780 +
CM002468.1supercontigCM002468.1:820033..820071 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006464cellular protein modification process
GO:0030091protein repair
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0008113peptide-methionine (S)-S-oxide reductase activity
Vocabulary: INTERPRO
TermDefinition
IPR028427Met_Sox_Rdtase
IPR002569Met_Sox_Rdtase_MsrA
Homology
[Close]
BLAST of EWM24116.1 vs. NCBI_GenBank
Match: gi|585105453|gb|EWM24116.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 388.267 bits (996), Expect = 1.343e-136
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 
Query:    1 MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIEGQAGKRPGDAVSFGDFLSFARAEITS 190
            MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIEGQAGKRPGDAVSFGDFLSFARAEITS
Sbjct:    1 MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIEGQAGKRPGDAVSFGDFLSFARAEITS 190
[Close]
BLAST of EWM24116.1 vs. NCBI_GenBank
Match: gi|585105454|gb|EWM24117.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 338.191 bits (866), Expect = 1.315e-115
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0 
Query:    1 MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163
            MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI
Sbjct:    1 MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163
[Close]
BLAST of EWM24116.1 vs. NCBI_GenBank
Match: gi|1119642033|ref|WP_072562365.1| (peptide-methionine (S)-S-oxide reductase [Methanohalophilus halophilus] >gi|1111279820|gb|APH39966.1| peptide-methionine (S)-S-oxide reductase [Methanohalophilus halophilus])

HSP 1 Score: 107.071 bits (266), Expect = 4.011e-26
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:  102 EVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163
            E ATFAAGCFW +E +F+ V GV STRVGYTGGSVP+PSYKEVCTGRTGHAEAVEI +DP I
Sbjct:    2 EKATFAAGCFWGIEAAFREVEGVISTRVGYTGGSVPNPSYKEVCTGRTGHAEAVEITYDPQI 63
[Close]
BLAST of EWM24116.1 vs. NCBI_GenBank
Match: gi|1088734757|emb|SDW29785.1| (peptide-methionine (S)-S-oxide reductase [Methanohalophilus halophilus])

HSP 1 Score: 107.071 bits (266), Expect = 4.544e-26
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:  102 EVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163
            E ATFAAGCFW +E +F+ V GV STRVGYTGGSVP+PSYKEVCTGRTGHAEAVEI +DP I
Sbjct:    7 EKATFAAGCFWGIEAAFREVEGVISTRVGYTGGSVPNPSYKEVCTGRTGHAEAVEITYDPQI 68
[Close]
BLAST of EWM24116.1 vs. NCBI_GenBank
Match: gi|553182052|ref|XP_005853670.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|422295395|gb|EKU22694.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.916 bits (263), Expect = 8.548e-26
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 
Query:   64 MGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSV 114
            MGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSV
Sbjct:    1 MGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSV 51
[Close]
BLAST of EWM24116.1 vs. NCBI_GenBank
Match: gi|1109523436|gb|OJH48681.1| (peptide methionine sulfoxide reductase [Methanohalophilus portucalensis FDF-1] >gi|1184388360|emb|SMH43763.1| peptide-methionine (S)-S-oxide reductase [Methanohalophilus portucalensis FDF-1])

HSP 1 Score: 105.916 bits (263), Expect = 1.364e-25
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 0 
Query:  102 EVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163
            E ATFAAGCFW +E +F+ V GV STRVGYTGGS P+PSYKEVCTGRTGHAEAVEI +DP I
Sbjct:    7 EKATFAAGCFWGIEAAFREVEGVISTRVGYTGGSTPNPSYKEVCTGRTGHAEAVEITYDPQI 68
[Close]
BLAST of EWM24116.1 vs. NCBI_GenBank
Match: gi|1119385233|ref|WP_072361296.1| (peptide-methionine (S)-S-oxide reductase [Methanohalophilus portucalensis])

HSP 1 Score: 105.531 bits (262), Expect = 1.447e-25
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 0 
Query:  102 EVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163
            E ATFAAGCFW +E +F+ V GV STRVGYTGGS P+PSYKEVCTGRTGHAEAVEI +DP I
Sbjct:    2 EKATFAAGCFWGIEAAFREVEGVISTRVGYTGGSTPNPSYKEVCTGRTGHAEAVEITYDPQI 63
[Close]
BLAST of EWM24116.1 vs. NCBI_GenBank
Match: gi|669151022|ref|XP_008611073.1| (peptide-methionine (S)-S-oxide reductase [Saprolegnia diclina VS20] >gi|530737081|gb|EQC35323.1| peptide-methionine (S)-S-oxide reductase [Saprolegnia diclina VS20])

HSP 1 Score: 104.375 bits (259), Expect = 8.975e-25
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:  101 QEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163
              +ATFAAGCFWSVELSFQR+PGV  T VGYT G   +P+Y EVCTG+TGHAEAV +KFDP+I
Sbjct:   29 DNIATFAAGCFWSVELSFQRIPGVLETHVGYTNGQKTNPTYTEVCTGKTGHAEAVRVKFDPAI 91
[Close]
BLAST of EWM24116.1 vs. NCBI_GenBank
Match: gi|1043242886|gb|OBZ35224.1| (peptide-methionine (S)-S-oxide reductase [Methanohalophilus sp. DAL1])

HSP 1 Score: 102.449 bits (254), Expect = 2.593e-24
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0 
Query:  102 EVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163
            E ATFAAGCFW VE +F+ V GV STRVGYTGGSV +PSYKEVCTGRTGHAE+VE+ +DP I
Sbjct:    2 EKATFAAGCFWGVEAAFREVEGVISTRVGYTGGSVSNPSYKEVCTGRTGHAESVEVTYDPQI 63
[Close]
BLAST of EWM24116.1 vs. NCBI_GenBank
Match: gi|813198767|ref|XP_012208966.1| (hypothetical protein SPRG_14431 [Saprolegnia parasitica CBS 223.65] >gi|641525888|gb|KDO20296.1| hypothetical protein SPRG_14431 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 103.219 bits (256), Expect = 3.213e-24
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:  101 QEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163
              +ATFAAGCFWSVEL+FQR+PGV  T VGYT G   +P+Y EVCTG+TGHAEAV IKFDP++
Sbjct:   29 DNIATFAAGCFWSVELNFQRIPGVLETHVGYTNGPKANPTYTEVCTGKTGHAEAVRIKFDPAV 91
The following BLAST results are available for this feature:
BLAST of EWM24116.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105453|gb|EWM24116.1|1.343e-136100.00peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|585105454|gb|EWM24117.1|1.315e-115100.00peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|1119642033|ref|WP_072562365.1|4.011e-2679.03peptide-methionine (S)-S-oxide reductase [Methanoh... [more]
gi|1088734757|emb|SDW29785.1|4.544e-2679.03peptide-methionine (S)-S-oxide reductase [Methanoh... [more]
gi|553182052|ref|XP_005853670.1|8.548e-26100.00peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|1109523436|gb|OJH48681.1|1.364e-2577.42peptide methionine sulfoxide reductase [Methanohal... [more]
gi|1119385233|ref|WP_072361296.1|1.447e-2577.42peptide-methionine (S)-S-oxide reductase [Methanoh... [more]
gi|669151022|ref|XP_008611073.1|8.975e-2571.43peptide-methionine (S)-S-oxide reductase [Saproleg... [more]
gi|1043242886|gb|OBZ35224.1|2.593e-2475.81peptide-methionine (S)-S-oxide reductase [Methanoh... [more]
gi|813198767|ref|XP_012208966.1|3.213e-2469.84hypothetical protein SPRG_14431 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6572rna6572Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications