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Properties
| Property Name | Value |
|---|
| Product | peptide methionine sulfoxide reductase |
| Orig transcript id | gnl|cribi|Naga_100404g4.9938.mrna |
| Orig protein id | gnl|cribi|Naga_100404g4.9938 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:818545..820531 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6571 ID=rna6571|Name=rna6571|organism=Nannochloropsis gaditana|type=mRNA|length=1149bp
GTGCGATAGCTCACTCCCTATCCAACAAAGGCGCTCACATAATGTTAAAA
TCACACAACCATATACAGGCCTACGTGCGAGAAGGTGGTCAAGGCCATGG
GAGGAGCATTCTCATCCTTCTTTCAGCGGCCTTCGATGCCACCGGAGAAC
GTGCCCCCCGTCTCGATTGTTGTGGTGGGAGCGTCGTTCGCGGGCCTGGC
TGCCGTCCGAACCTTGGTCCAGGCGTCGGACCCTACGAAGAGAAGACCCT
TTCGGGTGACCGTGGTGGAGCCCAAGGGCTACTTCGAGTACACACCGGGC
ATCTTACGCGCCCTCGTAGCTCCCGAACATGCCGATGCTTTGTGCGTGCC
TTTAAAAGAGATACTGGAAAAGCCCTGGGGCACGCCCCCCACAGTGGATG
CCACTGAAAGTACAGGCCAAGTGACGTGGGTGAAGGGGTGGCTGAGAAAA
ATCGAGACGAAAAGCATTCAGGTCACGTGCTACGGGAAGAGGGAAGACCC
ACCGACGGATGGACACGCTGTCGATGGGAGCAGCAGCCGCGTGGACGAGA
AACATCCGCGGCAGGAGAAGCGCACGACGTACACGGTGGCGGTCCCGTAC
GACCACCTCCTGATATGCACAGGGTCGGGCTATGCCGCTCCCATCAAAGC
CCCCGCCTCCCTCCTTGCCTCCGTCCCACCCCATCCTTCTCCTCCCCGAC
GGGCAGGCAAGGGGTGGGAAAGCGAGGAGCATCCGGAGACGGACCGGGAC
ACATCGAAACAGGTGGCGGAGGAGGGCGGGGGGAGGCGGGGGGAGGCGGG
GGAGAGGACGAGTCCACGCGCGAGGGACGTCTTTCCGTTTTGAAACGGGA
GGCGCGAGCTGTCGCCGCAGCGAGACATGTCCTGATCGTGGGCGGGGGCT
CTGTGGGGGTGGAGCTCGCGGCGGAATTGGCCGCCGCCCCTCCCGGTGCT
ATCCCTCCCTCCCTTACTCCCTCCCCCTCCACCTCGGCGACGAAGGAAGG
GACGGAGGGGACAGAGGAAGGAGGAGGAGGGAGGGAGGGTGGGCGGGCGG
GAAGGAGGGAGGGCCGAGAAGTGGTGCTGGTGTCGAAATCGTCGCGGTTG
CTCCCAGGTTTCCCACCTGCCTGTGCCGAGGCCGCTTTACGATGGCTTC back to topprotein sequence of rna6571 >rna6571-protein ID=rna6571-protein|Name=rna6571|organism=Nannochloropsis gaditana|type=polypeptide|length=263bp
MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQI
AEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWG
QEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTG
HAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYH
SPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQC
ARKGDLTPIRCYG back to topmRNA from alignment at CM002468.1:818545..820531+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6571 ID=rna6571|Name=rna6571|organism=Nannochloropsis gaditana|type=mRNA|length=1987bp|location=Sequence derived from alignment at CM002468.1:818545..820531+ (Nannochloropsis gaditana)
ATGCTACGCGATTGCCTGGAATTTAGACCGGGCTGTGACGTGAACGTTTT
GTTCTCATATCATTGCCCAAGCTGGTGCACACCAGCATCGGAACAAAGGG
ACAATTTCGTCCGTAGTGTGTGGTATCGTCGCTCAATCTTCAAGTCATGC
GACCTTCATAAAATGGTCGTGCGTTTATGAAATATTTCATGTCTCCAGCT
ATGATGCTCCTGACACTTTCGTTTCTACTGCTACAGGcttcttcccgctc
ctcATAGTCCGGGGACGCAATTTCATGCGCCACGTAAGTTTGTCCGTTTT
TCTAGTCCACTACGTCATTGCAAGTATTTCCGCTTCGTGGGCCGGGCAAA
TAGCTGAAAAGGCAGGGGAATTCCTAGAAAACTCCTTACAAATGGGACAA
GGGATGGCCACAGGAAAACCATTCGGGGAGTCCGCGGCTAAAGTTGTGAG
CAAGGTATTTTCTACGGAAAGTGCCAACGTCAAGGCCTCATGCTCGTGGG
GTCAGGAGGTTGCTACTTTTGCCGCTGGATGCTTTTGGTCAGGTTGGTGC
ACCTACAGGCCACTAGCATTGAATACCTTCCCTTTATATTTTGTATCAGC
ATCTTGACGCGTTTGCCTTGGTAAAAAGCATTTTCAGTGTCCCGCTCCTA
GCCGTAGCGCACGTTCCCAGTCATCGTCTCTTTCCTATCGCCCGAGACCC
GAAGTATAATGCCCCATTATGCACGGCGTATCCCTCCATGAGGCCGTAGT
CAAAATCCAAGCTGTCCTCTCATTAgcccctccatgtcctccctttccct
cccagtcGAGCTTTCTTTTCAACGAGTCCCTGGGGTGGCCTCCACCCGTG
TAGGGTATACAGGGGGAAGCGTGCCACACCCTTCGTATAAAGAGGTTTGC
ACAGGGAGGACTGGACATGCTGAGGCTGTGGAGATAAAATTCGATCCTTC
CATAGGTAGGGAGGAATTGCGGGCGAAGGAAACAAAGGGAGGTCATTATC
GCAAGCATGTCCAGTGCCCCTCTTTTCGGAACTAGCATCTCCACCAACCA
TCAACCACCTAAAGTTAGCCACGCCAGACTTCTTTACTTTTTGTCTCTGA
CGTATCCTTGCTTTTCCCTCGTCGTCGCTCTCCTCGTAGTCACGTATCCG
GAGCTCTTGACGGTTTTATGGGATCGGCACGACCCCACCCAGAAGGACAG
GCAGGGAAACGACCGGGGGACGCAGTATCGTTCGGCGTGAGTGGAGGGGC
AGTGGGAGCAACGCaagcaagaagaaagagggcttgGACGGGATCGAATT
TCTCCCAGGAATACGGCATGGAAGGGTACCGCGATCATATGCCTTCCTTG
TGGCAATGAGGGGGGAAACTGGATTTGTTATGATGATTATACGCACTGGA
ATTTATTCTCCTCCATATATCCTTGCACCCTTCAACATGTTTCCGAACCA
CGTGCATACTGATTTGTTGGGGGTCTCTGTTTTCGTAGGATTTTTTATCA
TTCGCCCGAGCAGAAATCACAAGCTGAAGCGGCCATTAAGCAAGAGCAAA
AGCGCCGGTCGATGCCAATTGTGACGCAACTTGTGCCTGCAACGACATTC
TACGAGGCCGAGGTAAATAAAGATAAATTATCACTAGGATATCAGTTGCG
AAGGGCAAGAAGCGGGAATCCTGTCATTTAGGGAAACATTTTACAGGGAA
GATGTGAGTCTTCTAGAACGCTCACTTACCATCAGGGCAATGTTTCCATC
GTTTCCTCTCCATTTGTCAGACTTACCACCAGCAATacctggagaagggg
ggtCAGTGCGCGCGAAAGGGAGATTTAACTCCGATTCGATGCTACGGCTG
AGAAGTACATGTTAAAGACAAAATGACCgcaaggcagagaggggtTGATA
TATTGATTTCGGGGGAAAATGTGAGCGTGGGATGCGACAAAAGACGGAAA
ATTAAGGGAAGAACAAATGAAGCTATGCGTCAGCTAT back to topCoding sequence (CDS) from alignment at CM002468.1:818545..820531+ >rna6571 ID=rna6571|Name=rna6571|organism=Nannochloropsis gaditana|type=CDS|length=4752bp|location=Sequence derived from alignment at CM002468.1:818545..820531+ (Nannochloropsis gaditana)
ATGCTACGCGATTGCCTGGAATTTAGACCGGGCTGcttcttcccgctcct
cATAGTCCGGGGACGCAATTTCATGCGCCACGTAAGTTTGTCCGTTTTTC
TAGTCCACTACGTCATTGCAAGTATTTCCGCTTCGTGGGCCGGGCAAATA
GCTGAAAAGGCAGGGGAATTCCTAGAAAACTCCTTACAAATGGGACAAGG
GATGGCCACAGGAAAACCATTCGGGGAGTCCGCGGCTAAAGTTGTGAGCA
AGGTATTTTCTACGGAAAGTGCCAACGTCAAGGCCTCATGCTCGTGGGGT
CAGGAGGTTGCTACTTTTGCCGCTGGATGCTTTTGGTCAGtcGAGCTTTC
TTTTCAACGAGTCCCTGGGGTGGCCTCCACCCGTGTAGGGTATACAGGGG
GAAGCGTGCCACACCCTTCGTATAAAGAGGTTTGCACAGGGAGGACTGGA
CATGCTGAGGCTGTGGAGATAAAATTCGATCCTTCCATAGTCACGTATCC
GGAGCTCTTGACGGTTTTATGGGATCGGCACGACCCCACCCAGAAGGACA
GGCAGGGAAACGACCGGGGGACGCAGTATCGTTCGGCGATTTTTTATCAT
TCGCCCGAGCAGAAATCACAAGCTGAAGCGGCCATTAAGCAAGAGCAAAA
GCGCCGGTCGATGCCAATTGTGACGCAACTTGTGCCTGCAACGACATTCT
ACGAGGCCGAGACTTACCACCAGCAATacctggagaaggggggtCAGTGC
GCGCGAAAGGGAGATTTAACTCCGATTCGATGCTACGGCTGAATGCTACG
CGATTGCCTGGAATTTAGACCGGGCTGcttcttcccgctcctcATAGTCC
GGGGACGCAATTTCATGCGCCACGTAAGTTTGTCCGTTTTTCTAGTCCAC
TACGTCATTGCAAGTATTTCCGCTTCGTGGGCCGGGCAAATAGCTGAAAA
GGCAGGGGAATTCCTAGAAAACTCCTTACAAATGGGACAAGGGATGGCCA
CAGGAAAACCATTCGGGGAGTCCGCGGCTAAAGTTGTGAGCAAGGTATTT
TCTACGGAAAGTGCCAACGTCAAGGCCTCATGCTCGTGGGGTCAGGAGGT
TGCTACTTTTGCCGCTGGATGCTTTTGGTCAGtcGAGCTTTCTTTTCAAC
GAGTCCCTGGGGTGGCCTCCACCCGTGTAGGGTATACAGGGGGAAGCGTG
CCACACCCTTCGTATAAAGAGGTTTGCACAGGGAGGACTGGACATGCTGA
GGCTGTGGAGATAAAATTCGATCCTTCCATAGTCACGTATCCGGAGCTCT
TGACGGTTTTATGGGATCGGCACGACCCCACCCAGAAGGACAGGCAGGGA
AACGACCGGGGGACGCAGTATCGTTCGGCGATTTTTTATCATTCGCCCGA
GCAGAAATCACAAGCTGAAGCGGCCATTAAGCAAGAGCAAAAGCGCCGGT
CGATGCCAATTGTGACGCAACTTGTGCCTGCAACGACATTCTACGAGGCC
GAGACTTACCACCAGCAATacctggagaaggggggtCAGTGCGCGCGAAA
GGGAGATTTAACTCCGATTCGATGCTACGGCTGAATGCTACGCGATTGCC
TGGAATTTAGACCGGGCTGcttcttcccgctcctcATAGTCCGGGGACGC
AATTTCATGCGCCACGTAAGTTTGTCCGTTTTTCTAGTCCACTACGTCAT
TGCAAGTATTTCCGCTTCGTGGGCCGGGCAAATAGCTGAAAAGGCAGGGG
AATTCCTAGAAAACTCCTTACAAATGGGACAAGGGATGGCCACAGGAAAA
CCATTCGGGGAGTCCGCGGCTAAAGTTGTGAGCAAGGTATTTTCTACGGA
AAGTGCCAACGTCAAGGCCTCATGCTCGTGGGGTCAGGAGGTTGCTACTT
TTGCCGCTGGATGCTTTTGGTCAGtcGAGCTTTCTTTTCAACGAGTCCCT
GGGGTGGCCTCCACCCGTGTAGGGTATACAGGGGGAAGCGTGCCACACCC
TTCGTATAAAGAGGTTTGCACAGGGAGGACTGGACATGCTGAGGCTGTGG
AGATAAAATTCGATCCTTCCATAGTCACGTATCCGGAGCTCTTGACGGTT
TTATGGGATCGGCACGACCCCACCCAGAAGGACAGGCAGGGAAACGACCG
GGGGACGCAGTATCGTTCGGCGATTTTTTATCATTCGCCCGAGCAGAAAT
CACAAGCTGAAGCGGCCATTAAGCAAGAGCAAAAGCGCCGGTCGATGCCA
ATTGTGACGCAACTTGTGCCTGCAACGACATTCTACGAGGCCGAGACTTA
CCACCAGCAATacctggagaaggggggtCAGTGCGCGCGAAAGGGAGATT
TAACTCCGATTCGATGCTACGGCTGAATGCTACGCGATTGCCTGGAATTT
AGACCGGGCTGcttcttcccgctcctcATAGTCCGGGGACGCAATTTCAT
GCGCCACGTAAGTTTGTCCGTTTTTCTAGTCCACTACGTCATTGCAAGTA
TTTCCGCTTCGTGGGCCGGGCAAATAGCTGAAAAGGCAGGGGAATTCCTA
GAAAACTCCTTACAAATGGGACAAGGGATGGCCACAGGAAAACCATTCGG
GGAGTCCGCGGCTAAAGTTGTGAGCAAGGTATTTTCTACGGAAAGTGCCA
ACGTCAAGGCCTCATGCTCGTGGGGTCAGGAGGTTGCTACTTTTGCCGCT
GGATGCTTTTGGTCAGtcGAGCTTTCTTTTCAACGAGTCCCTGGGGTGGC
CTCCACCCGTGTAGGGTATACAGGGGGAAGCGTGCCACACCCTTCGTATA
AAGAGGTTTGCACAGGGAGGACTGGACATGCTGAGGCTGTGGAGATAAAA
TTCGATCCTTCCATAGTCACGTATCCGGAGCTCTTGACGGTTTTATGGGA
TCGGCACGACCCCACCCAGAAGGACAGGCAGGGAAACGACCGGGGGACGC
AGTATCGTTCGGCGATTTTTTATCATTCGCCCGAGCAGAAATCACAAGCT
GAAGCGGCCATTAAGCAAGAGCAAAAGCGCCGGTCGATGCCAATTGTGAC
GCAACTTGTGCCTGCAACGACATTCTACGAGGCCGAGACTTACCACCAGC
AATacctggagaaggggggtCAGTGCGCGCGAAAGGGAGATTTAACTCCG
ATTCGATGCTACGGCTGAATGCTACGCGATTGCCTGGAATTTAGACCGGG
CTGcttcttcccgctcctcATAGTCCGGGGACGCAATTTCATGCGCCACG
TAAGTTTGTCCGTTTTTCTAGTCCACTACGTCATTGCAAGTATTTCCGCT
TCGTGGGCCGGGCAAATAGCTGAAAAGGCAGGGGAATTCCTAGAAAACTC
CTTACAAATGGGACAAGGGATGGCCACAGGAAAACCATTCGGGGAGTCCG
CGGCTAAAGTTGTGAGCAAGGTATTTTCTACGGAAAGTGCCAACGTCAAG
GCCTCATGCTCGTGGGGTCAGGAGGTTGCTACTTTTGCCGCTGGATGCTT
TTGGTCAGtcGAGCTTTCTTTTCAACGAGTCCCTGGGGTGGCCTCCACCC
GTGTAGGGTATACAGGGGGAAGCGTGCCACACCCTTCGTATAAAGAGGTT
TGCACAGGGAGGACTGGACATGCTGAGGCTGTGGAGATAAAATTCGATCC
TTCCATAGTCACGTATCCGGAGCTCTTGACGGTTTTATGGGATCGGCACG
ACCCCACCCAGAAGGACAGGCAGGGAAACGACCGGGGGACGCAGTATCGT
TCGGCGATTTTTTATCATTCGCCCGAGCAGAAATCACAAGCTGAAGCGGC
CATTAAGCAAGAGCAAAAGCGCCGGTCGATGCCAATTGTGACGCAACTTG
TGCCTGCAACGACATTCTACGAGGCCGAGACTTACCACCAGCAATacctg
gagaaggggggtCAGTGCGCGCGAAAGGGAGATTTAACTCCGATTCGATG
CTACGGCTGAATGCTACGCGATTGCCTGGAATTTAGACCGGGCTGcttct
tcccgctcctcATAGTCCGGGGACGCAATTTCATGCGCCACGTAAGTTTG
TCCGTTTTTCTAGTCCACTACGTCATTGCAAGTATTTCCGCTTCGTGGGC
CGGGCAAATAGCTGAAAAGGCAGGGGAATTCCTAGAAAACTCCTTACAAA
TGGGACAAGGGATGGCCACAGGAAAACCATTCGGGGAGTCCGCGGCTAAA
GTTGTGAGCAAGGTATTTTCTACGGAAAGTGCCAACGTCAAGGCCTCATG
CTCGTGGGGTCAGGAGGTTGCTACTTTTGCCGCTGGATGCTTTTGGTCAG
tcGAGCTTTCTTTTCAACGAGTCCCTGGGGTGGCCTCCACCCGTGTAGGG
TATACAGGGGGAAGCGTGCCACACCCTTCGTATAAAGAGGTTTGCACAGG
GAGGACTGGACATGCTGAGGCTGTGGAGATAAAATTCGATCCTTCCATAG
TCACGTATCCGGAGCTCTTGACGGTTTTATGGGATCGGCACGACCCCACC
CAGAAGGACAGGCAGGGAAACGACCGGGGGACGCAGTATCGTTCGGCGAT
TTTTTATCATTCGCCCGAGCAGAAATCACAAGCTGAAGCGGCCATTAAGC
AAGAGCAAAAGCGCCGGTCGATGCCAATTGTGACGCAACTTGTGCCTGCA
ACGACATTCTACGAGGCCGAGACTTACCACCAGCAATacctggagaaggg
gggtCAGTGCGCGCGAAAGGGAGATTTAACTCCGATTCGATGCTACGGCT
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