EWM24117.1, cds6555 (CDS) Nannochloropsis gaditana

Overview
NameEWM24117.1
Unique Namecds6555
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:818545..818578 +
Alignment locationCM002468.1:818781..819086 +
Alignment locationCM002468.1:819350..819499 +
Alignment locationCM002468.1:819684..819780 +
Alignment locationCM002468.1:820033..820156 +
Alignment locationCM002468.1:820315..820395 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24117.1
Productpeptide methionine sulfoxide reductase
Orig transcript idgnl|cribi|Naga_100404g4.9938.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:818545..818578 +
CM002468.1supercontigCM002468.1:818781..819086 +
CM002468.1supercontigCM002468.1:819350..819499 +
CM002468.1supercontigCM002468.1:819684..819780 +
CM002468.1supercontigCM002468.1:820033..820156 +
CM002468.1supercontigCM002468.1:820315..820395 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0009987cellular process
GO:0042221response to chemical
GO:0019538protein metabolic process
GO:0030091protein repair
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0008113peptide-methionine (S)-S-oxide reductase activity
Vocabulary: INTERPRO
TermDefinition
IPR028427Met_Sox_Rdtase
IPR002569Met_Sox_Rdtase_MsrA
Homology
BLAST of EWM24117.1 vs. NCBI_GenBank
Match: gi|585105454|gb|EWM24117.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 550.436 bits (1417), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query:    1 MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 263
            MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG
Sbjct:    1 MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 263          
BLAST of EWM24117.1 vs. NCBI_GenBank
Match: gi|585105453|gb|EWM24116.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 338.191 bits (866), Expect = 1.820e-115
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query:    1 MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163
            MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI
Sbjct:    1 MLRDCLEFRPGCFFPLLIVRGRNFMRHVSLSVFLVHYVIASISASWAGQIAEKAGEFLENSLQMGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSI 163          
BLAST of EWM24117.1 vs. NCBI_GenBank
Match: gi|553182052|ref|XP_005853670.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|422295395|gb|EKU22694.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 293.123 bits (749), Expect = 2.909e-98
Identity = 150/200 (75.00%), Postives = 150/200 (75.00%), Query Frame = 0
Query:   64 MGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 263
            MGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWS                                                  VTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG
Sbjct:    1 MGQGMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWS--------------------------------------------------VTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 150          
BLAST of EWM24117.1 vs. NCBI_GenBank
Match: gi|1134799706|gb|OMJ12277.1| (Peptide methionine sulfoxide reductase A2-1 [Smittium culicis] >gi|1134803730|gb|OMJ14380.1| Peptide methionine sulfoxide reductase A2-1 [Smittium culicis])

HSP 1 Score: 226.868 bits (577), Expect = 8.836e-72
Identity = 101/171 (59.06%), Postives = 133/171 (77.78%), Query Frame = 0
Query:   93 VKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 263
             K++ +   E A FAAGCFWSVEL FQR+ GV  T+VGY+GGS+P+P+YK+VC+G TGHAE+V +++DP++++Y +LL   W++HDPT ++RQG D GTQYRSAIFYHSPEQK  A  +++ EQ +    IVTQ+V A+ FY AE YHQ+YLEKGGQCA KG+   IRCYG
Sbjct:    8 TKSASAPNSEFAEFAAGCFWSVELMFQRLHGVLQTQVGYSGGSIPNPTYKQVCSGSTGHAESVLLEYDPAVISYNQLLNAFWEKHDPTTENRQGGDIGTQYRSAIFYHSPEQKDAAIKSLEAEQVKYKSKIVTQIVQASQFYPAEEYHQKYLEKGGQCALKGNKDRIRCYG 178          
BLAST of EWM24117.1 vs. NCBI_GenBank
Match: gi|1132414842|gb|OLY77919.1| (Peptide methionine sulfoxide reductase A1 [Smittium mucronatum] >gi|1132415523|gb|OLY78159.1| Peptide methionine sulfoxide reductase A1 [Smittium mucronatum])

HSP 1 Score: 226.098 bits (575), Expect = 1.575e-71
Identity = 105/171 (61.40%), Postives = 130/171 (76.02%), Query Frame = 0
Query:   93 VKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 263
            VK +   G + A FAAGCFWSVEL+FQRV GV   +VGY+GGS   P+Y +VC G TGHAE+V ++FDPS+V+Y +LL V W +HDPT  ++QGND GTQYRS IFYHSPEQK QA  ++++EQK+ +  IVTQ+V A  FY AE YHQ+YLEKGGQCA KG+   IRCYG
Sbjct:    8 VKTASVPGSQFAEFAAGCFWSVELAFQRVHGVLQAQVGYSGGSTVDPTYNQVCRGNTGHAESVLLEFDPSVVSYNQLLDVFWKKHDPTTPNKQGNDVGTQYRSVIFYHSPEQKEQAIKSMEKEQKKYNSKIVTQIVEAGPFYPAEEYHQKYLEKGGQCAMKGNNDHIRCYG 178          
BLAST of EWM24117.1 vs. NCBI_GenBank
Match: gi|1134799146|gb|OMJ11986.1| (Peptide methionine sulfoxide reductase A2-1 [Smittium culicis] >gi|1134825965|gb|OMJ29202.1| Peptide methionine sulfoxide reductase A2-1 [Smittium culicis])

HSP 1 Score: 224.942 bits (572), Expect = 5.008e-71
Identity = 102/176 (57.95%), Postives = 136/176 (77.27%), Query Frame = 0
Query:   88 TESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 263
            T+S +V +S     E A FAAGCFWSVEL FQR+ GV  T+VGY+GGS+P+P+YK+VC+G TGHAE+V +++DP++++Y +LL   W++HDPT ++RQG D GTQYRSAIFYH+PEQK  A  +++ EQ +    IVTQ+V A+ FY AE YHQ+YLEKGGQC+ KG+   IRCYG
Sbjct:    8 TKSTSVPSS-----EFAEFAAGCFWSVELMFQRLHGVLQTQVGYSGGSIPNPTYKQVCSGSTGHAESVLLEYDPNVISYSQLLNAFWEKHDPTTENRQGGDIGTQYRSAIFYHTPEQKDAAIKSLETEQSKYQSKIVTQIVQASQFYPAEEYHQKYLEKGGQCSLKGNKDRIRCYG 178          
BLAST of EWM24117.1 vs. NCBI_GenBank
Match: gi|1160575125|ref|XP_020426718.1| (peptide methionine sulfoxide reductase [Polysphondylium pallidum PN500] >gi|281200364|gb|EFA74584.1| peptide methionine sulfoxide reductase [Polysphondylium pallidum PN500])

HSP 1 Score: 224.172 bits (570), Expect = 7.793e-71
Identity = 104/162 (64.20%), Postives = 126/162 (77.78%), Query Frame = 0
Query:  102 EVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 263
            E ATFAAGCFWSVEL FQR+ GV STRVGYT G   +P+YKEVCTG TGHAEAVE++FDP+ V+Y +LL V W +HDPT  +RQG D+GTQYRS I+YH+  Q ++AE + KQEQ +   PIVT+++PA  FY AE YHQQYL+KGGQC+ KG    IRCYG
Sbjct:    4 EKATFAAGCFWSVELVFQRMVGVLSTRVGYTNGVKLNPTYKEVCTGTTGHAEAVELEFDPAQVSYGQLLDVFWKKHDPTTLNRQGGDQGTQYRSGIYYHNDRQHTEAEESKKQEQLKYKQPIVTEILPAGVFYPAEEYHQQYLQKGGQCSSKGCTDKIRCYG 165          
BLAST of EWM24117.1 vs. NCBI_GenBank
Match: gi|330801043|ref|XP_003288540.1| (hypothetical protein DICPUDRAFT_47974 [Dictyostelium purpureum] >gi|325081390|gb|EGC34907.1| hypothetical protein DICPUDRAFT_47974 [Dictyostelium purpureum])

HSP 1 Score: 223.016 bits (567), Expect = 1.583e-70
Identity = 100/160 (62.50%), Postives = 126/160 (78.75%), Query Frame = 0
Query:  104 ATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 263
            ATFAAGCFWSVEL FQRV GV  TRVGY  G V +P+Y++VC+G+TGHAEAV+++FDP  V+Y ELL + W +HDPT  +RQGND G+QYRS I+YHS EQK +A  + ++EQK+  +PIVT+++PA  FY AE YHQ+YLEKGGQC+ KG    IRCYG
Sbjct:    4 ATFAAGCFWSVELLFQRVKGVVKTRVGYCNGQVENPTYRDVCSGKTGHAEAVDLEFDPKEVSYKELLQLFWGKHDPTTLNRQGNDHGSQYRSGIYYHSEEQKKEATESKEEEQKKYKVPIVTEILPAGHFYPAEEYHQRYLEKGGQCSSKGCNDKIRCYG 163          
BLAST of EWM24117.1 vs. NCBI_GenBank
Match: gi|299116043|emb|CBN74459.1| (Peptide methionine sulfoxide reductase [Ectocarpus siliculosus])

HSP 1 Score: 222.631 bits (566), Expect = 7.350e-70
Identity = 110/197 (55.84%), Postives = 130/197 (65.99%), Query Frame = 0
Query:   67 GMATGKPFGESAAKVVSKVFSTESANVKASCSWGQEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 263
            G A     G  AA +V+K  S              E   FAAGCFWSVEL++QRVPGV  T VGYT G    P+Y+EVC+G TGH EA+ +KFDP +V Y ELLTVLWD+ DPT  +RQGND GTQYRS I+Y S EQK  A A+   EQ +   PIVT++  AT FY AE YHQ+YLEKGGQC+ KGD + IRCYG
Sbjct:    2 GNAKSMSLGPEAAAIVTKAVSPMPTPAIV------ETGIFAAGCFWSVELAYQRVPGVLETEVGYTDGHKKDPTYQEVCSGSTGHTEALRVKFDPRVVKYNELLTVLWDKIDPTTLNRQGNDSGTQYRSGIYYTSAEQKEIALASKAAEQAKLDKPIVTEIKEATEFYRAEDYHQKYLEKGGQCSLKGDTSNIRCYG 192          
BLAST of EWM24117.1 vs. NCBI_GenBank
Match: gi|813198767|ref|XP_012208966.1| (hypothetical protein SPRG_14431 [Saprolegnia parasitica CBS 223.65] >gi|641525888|gb|KDO20296.1| hypothetical protein SPRG_14431 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 221.09 bits (562), Expect = 2.519e-69
Identity = 104/163 (63.80%), Postives = 120/163 (73.62%), Query Frame = 0
Query:  101 QEVATFAAGCFWSVELSFQRVPGVASTRVGYTGGSVPHPSYKEVCTGRTGHAEAVEIKFDPSIVTYPELLTVLWDRHDPTQKDRQGNDRGTQYRSAIFYHSPEQKSQAEAAIKQEQKRRSMPIVTQLVPATTFYEAETYHQQYLEKGGQCARKGDLTPIRCYG 263
              +ATFAAGCFWSVEL+FQR+PGV  T VGYT G   +P+Y EVCTG+TGHAEAV IKFDP++V+Y  LL   W  HDPT  ++Q ND GTQYRS I+YHS  QKS A A+    Q R   PIVT++V A TFY AE YHQ+YLEKGGQCARKG    IRCYG
Sbjct:   29 DNIATFAAGCFWSVELNFQRIPGVLETHVGYTNGPKANPTYTEVCTGKTGHAEAVRIKFDPAVVSYDALLDKFWSIHDPTTLNQQKNDVGTQYRSGIYYHSDAQKSLALASKASAQPRFRRPIVTEVVAAETFYVAEDYHQRYLEKGGQCARKGSTDAIRCYG 191          
The following BLAST results are available for this feature:
BLAST of EWM24117.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105454|gb|EWM24117.1|0.000e+0100.00peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|585105453|gb|EWM24116.1|1.820e-115100.00peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|553182052|ref|XP_005853670.1|2.909e-9875.00peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|1134799706|gb|OMJ12277.1|8.836e-7259.06Peptide methionine sulfoxide reductase A2-1 [Smitt... [more]
gi|1132414842|gb|OLY77919.1|1.575e-7161.40Peptide methionine sulfoxide reductase A1 [Smittiu... [more]
gi|1134799146|gb|OMJ11986.1|5.008e-7157.95Peptide methionine sulfoxide reductase A2-1 [Smitt... [more]
gi|1160575125|ref|XP_020426718.1|7.793e-7164.20peptide methionine sulfoxide reductase [Polysphond... [more]
gi|330801043|ref|XP_003288540.1|1.583e-7062.50hypothetical protein DICPUDRAFT_47974 [Dictyosteli... [more]
gi|299116043|emb|CBN74459.1|7.350e-7055.84Peptide methionine sulfoxide reductase [Ectocarpus... [more]
gi|813198767|ref|XP_012208966.1|2.519e-6963.80hypothetical protein SPRG_14431 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6571rna6571Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications