rna6570, rna6570 (mRNA) Nannochloropsis gaditana

Overview
Namerna6570
Unique Namerna6570
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length649
Alignment locationCM002468.1:817070..818466 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100404g5.9940.mrna
Orig protein idgnl|cribi|Naga_100404g5.9940
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:817070..818466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100404g5gene6350Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6570rna6570-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24119.1cds6554Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6570 ID=rna6570|Name=rna6570|organism=Nannochloropsis gaditana|type=mRNA|length=649bp
CTTCTTCCTCTTGCGAGGCCATCGCCGGATTTCTCCTTGCTCCTCTGTCT
CATGTCTCCCCTCCCTCGTCTCCCCCTCCCCCTCCTCCCTTTTTGCCACA
GGGATCGAAGCCTCCAGTGGCTGGCTTCTGACAGACAGCCGCCTTCGCGT
GTCCTCTCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCGTCCTCGCTGCAGGCGACGTGACGGATAGGCCGGGCGGGGAC
GACAAGACGGCGTTCGCCGCCGAGCTCCAGGCGGAAGCTGCCGCGAGACA
GGTATTATCGAGCCTGGCTTTGTCGCCAACGTCCTCCGCCCCGCCCTCCG
CCCCGCCCTCCCTTCCGCCCTCCCTCCCGGACTGGACATACCCCACTGCC
TTGACGGGCGACACGATGGCCCCCTTTATCTATTGCCTGAGCCTGGGGCC
GTACGAAGGGATCCTAGTCTTCAATGACTTGGTGGTGAGGCGGGAGGGAG
GGGGGCCGGGAGGGAGGGCCGGTAGGAGGACGAGGAAGGGGGGGAGGAGG
CACTCTTTTCGGGTGGGAATGACTGGTGCTGGAGACTGAGAGAGAGGGCA
CAACAAGGTTGATCGTCCTTCTCATGTGGCCTTATCCTCTCTCCCTCCC
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protein sequence of rna6570

>rna6570-protein ID=rna6570-protein|Name=rna6570|organism=Nannochloropsis gaditana|type=polypeptide|length=248bp
MGGAFSSFFQRPSMPPENVPPVSIVVVGASFAGLAAVRTLVQASDPTKRR
PFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKPWGTPPTV
DATESTGQVTWVKGWLRKIETKSIQVTCYGKREDPPTDGHAVDGSSSRVD
EKHPRQEKRTTYTVAVPYDHLLICTGSGYAAPIKAPASLLASVPPHPSPP
RRAGKGWESEEHPETDRDTSKQVAEEGGGRRGEAGERTSPRARDVFPF
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mRNA from alignment at CM002468.1:817070..818466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6570 ID=rna6570|Name=rna6570|organism=Nannochloropsis gaditana|type=mRNA|length=1397bp|location=Sequence derived from alignment at CM002468.1:817070..818466- (Nannochloropsis gaditana)
GTGCGATAGCTCACTCCCTATCCAACAAAGGCGCTCACATAATGTTAAAA
TCACACAACCATATACAGGCCTACGTGCGAGAAGGTGGTCAAGGCCATGG
GAGGAGCATTCTCATCCTTCTTTCAGCGGCCTTCGATGCCACCGGAGAAC
GTGCCCCCCGTCTCGATTGTTGTGGTGGGAGCGTCGTTCGCGGGCCTGGC
TGCCGTCCGAACCTTGGTCCAGGCGTCGGACCCTACGAAGAGAAGACCCT
TTCGGGTGACCGTGGTGGAGCCCAAGGGCTACTTCGAGTACACACCGGGC
ATCTTACGCGCCCTCGTAGCTCCCGAACATGCCGATGCTTTGTGCGTGCC
TTTAAAAGAGTACGTACGAAAAGGGAACACAGGACCCTACGAAATGCGCT
CACATTCGTACGACCTCAGAATGGATGTACATACGGACGCGTGTACGGTT
GTCATCACCGATTCATGGATGGCAGTCGGTCAAGAAAGGGCCTTAGGGGA
GCTTGTCCGTGCATGCACGCATAGATAGGGAGAAAACGCCCGGACTGATG
CAGAGATTCTACTGGCATTCGGCATAGCCTGACCTTGCCTCCTGCCTCAC
ACACCAGGATACTGGAAAAGCCCTGGGGCACGCCCCCCACAGTGGATGCC
ACTGAAAGTACAGGCCAAGTGACGTGGGTGAAGGGGTGGCTGAGAAAAAT
CGAGACGAAAAGCATTCAGGTCACGTGCTACGGGAAGAGGGAAGACCCAC
CGACGGATGGACACGCTGTCGATGGGAGCAGCAGCCGCGTGGACGAGAAA
CATCCGCGGCAGGAGAAGCGCACGACGTACACGGTGGCGGTCCCGTACGA
CCACCTCCTGATATGCACAGGGTCGGGCTATGCCGCTCCCATCAAAGCCC
CCGCCTCCCTCCTTGCCTCCGTCCCACCCCATCCTTCTCCTCCCCGACGG
GCAGGCAAGGGGTGGGAAAGCGAGGAGCATCCGGAGACGGACCGGGACAC
ATCGAAACAGGTGGCGGAGGAGGGCGGGGGGAGGCGGGGGGAGGCGGGGG
AGAGGACGAGTCCACGCGCGAGGGACGTCTTTCCGTTTTGAAACGGGAGG
CGCGAGCTGTCGCCGCAGCGAGACATGTCCTGATCGTGGGCGGGGGCTCT
GTGGGGGTGGAGCTCGCGGCGGAATTGGCCGCCGCCCCTCCCGGTGCTAT
CCCTCCCTCCCTTACTCCCTCCCCCTCCACCTCGGCGACGAAGGAAGGGA
CGGAGGGGACAGAGGAAGGAGGAGGAGGGAGGGAGGGTGGGCGGGCGGGA
AGGAGGGAGGGCCGAGAAGTGGTGCTGGTGTCGAAATCGTCGCGGTTGCT
CCCAGGTTTCCCACCTGCCTGTGCCGAGGCCGCTTTACGATGGCTTC
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Coding sequence (CDS) from alignment at CM002468.1:817070..818466-

>rna6570 ID=rna6570|Name=rna6570|organism=Nannochloropsis gaditana|type=CDS|length=1494bp|location=Sequence derived from alignment at CM002468.1:817070..818466- (Nannochloropsis gaditana)
GATACTGGAAAAGCCCTGGGGCACGCCCCCCACAGTGGATGCCACTGAAA
GTACAGGCCAAGTGACGTGGGTGAAGGGGTGGCTGAGAAAAATCGAGACG
AAAAGCATTCAGGTCACGTGCTACGGGAAGAGGGAAGACCCACCGACGGA
TGGACACGCTGTCGATGGGAGCAGCAGCCGCGTGGACGAGAAACATCCGC
GGCAGGAGAAGCGCACGACGTACACGGTGGCGGTCCCGTACGACCACCTC
CTGATATGCACAGGGTCGGGCTATGCCGCTCCCATCAAAGCCCCCGCCTC
CCTCCTTGCCTCCGTCCCACCCCATCCTTCTCCTCCCCGACGGGCAGGCA
AGGGGTGGGAAAGCGAGGAGCATCCGGAGACGGACCGGGACACATCGAAA
CAGGTGGCGGAGGAGGGCGGGGGGAGGCGGGGGGAGGCGGGGGAGAGGAC
GAGTCCACGCGCGAGGGACGTCTTTCCGTTTTGAATGGGAGGAGCATTCT
CATCCTTCTTTCAGCGGCCTTCGATGCCACCGGAGAACGTGCCCCCCGTC
TCGATTGTTGTGGTGGGAGCGTCGTTCGCGGGCCTGGCTGCCGTCCGAAC
CTTGGTCCAGGCGTCGGACCCTACGAAGAGAAGACCCTTTCGGGTGACCG
TGGTGGAGCCCAAGGGCTACTTCGAGTACACACCGGGCATCTTACGCGCC
CTCGTAGCTCCCGAACATGCCGATGCTTTGTGCGTGCCTTTAAAAGAGAT
ACTGGAAAAGCCCTGGGGCACGCCCCCCACAGTGGATGCCACTGAAAGTA
CAGGCCAAGTGACGTGGGTGAAGGGGTGGCTGAGAAAAATCGAGACGAAA
AGCATTCAGGTCACGTGCTACGGGAAGAGGGAAGACCCACCGACGGATGG
ACACGCTGTCGATGGGAGCAGCAGCCGCGTGGACGAGAAACATCCGCGGC
AGGAGAAGCGCACGACGTACACGGTGGCGGTCCCGTACGACCACCTCCTG
ATATGCACAGGGTCGGGCTATGCCGCTCCCATCAAAGCCCCCGCCTCCCT
CCTTGCCTCCGTCCCACCCCATCCTTCTCCTCCCCGACGGGCAGGCAAGG
GGTGGGAAAGCGAGGAGCATCCGGAGACGGACCGGGACACATCGAAACAG
GTGGCGGAGGAGGGCGGGGGGAGGCGGGGGGAGGCGGGGGAGAGGACGAG
TCCACGCGCGAGGGACGTCTTTCCGTTTTGAATGGGAGGAGCATTCTCAT
CCTTCTTTCAGCGGCCTTCGATGCCACCGGAGAACGTGCCCCCCGTCTCG
ATTGTTGTGGTGGGAGCGTCGTTCGCGGGCCTGGCTGCCGTCCGAACCTT
GGTCCAGGCGTCGGACCCTACGAAGAGAAGACCCTTTCGGGTGACCGTGG
TGGAGCCCAAGGGCTACTTCGAGTACACACCGGGCATCTTACGCGCCCTC
GTAGCTCCCGAACATGCCGATGCTTTGTGCGTGCCTTTAAAAGA
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Synonyms
Publications