EWM24119.1, cds6554 (CDS) Nannochloropsis gaditana

Overview
NameEWM24119.1
Unique Namecds6554
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:818108..818370 -
Alignment locationCM002468.1:817376..817859 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24119.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100404g5.9940.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:818108..818370 -
CM002468.1supercontigCM002468.1:817376..817859 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR023753Pyr_nucl-diS_OxRdtase_FAD/NAD
Homology
BLAST of EWM24119.1 vs. NCBI_GenBank
Match: gi|585105456|gb|EWM24119.1| (hypothetical protein Naga_100404g5 [Nannochloropsis gaditana])

HSP 1 Score: 501.516 bits (1290), Expect = 1.543e-179
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query:    1 MGGAFSSFFQRPSMPPENVPPVSIVVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKPWGTPPTVDATESTGQVTWVKGWLRKIETKSIQVTCYGKREDPPTDGHAVDGSSSRVDEKHPRQEKRTTYTVAVPYDHLLICTGSGYAAPIKAPASLLASVPPHPSPPRRAGKGWESEEHPETDRDTSKQVAEEGGGRRGEAGERTSPRARDVFPF 248
            MGGAFSSFFQRPSMPPENVPPVSIVVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKPWGTPPTVDATESTGQVTWVKGWLRKIETKSIQVTCYGKREDPPTDGHAVDGSSSRVDEKHPRQEKRTTYTVAVPYDHLLICTGSGYAAPIKAPASLLASVPPHPSPPRRAGKGWESEEHPETDRDTSKQVAEEGGGRRGEAGERTSPRARDVFPF
Sbjct:    1 MGGAFSSFFQRPSMPPENVPPVSIVVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKPWGTPPTVDATESTGQVTWVKGWLRKIETKSIQVTCYGKREDPPTDGHAVDGSSSRVDEKHPRQEKRTTYTVAVPYDHLLICTGSGYAAPIKAPASLLASVPPHPSPPRRAGKGWESEEHPETDRDTSKQVAEEGGGRRGEAGERTSPRARDVFPF 248          
BLAST of EWM24119.1 vs. NCBI_GenBank
Match: gi|553182034|ref|XP_005853667.1| (hypothetical protein NGA_0482200 [Nannochloropsis gaditana CCMP526] >gi|422295392|gb|EKU22691.1| hypothetical protein NGA_0482200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 340.117 bits (871), Expect = 1.095e-116
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query:    1 MGGAFSSFFQRPSMPPENVPPVSIVVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKPWGTPPTVDATESTGQVTWVKGWLRKIETKSIQVTCYGKREDPPTDGHAVDGSSSRVDEKHPRQEKRTTYTVAVP 167
            MGGAFSSFFQRPSMPPENVPPVSIVVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKPWGTPPTVDATESTGQVTWVKGWLRKIETKSIQVTCYGKREDPPTDGHAVDGSSSRVDEKHPRQEKRTTYTVAVP
Sbjct:    1 MGGAFSSFFQRPSMPPENVPPVSIVVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKPWGTPPTVDATESTGQVTWVKGWLRKIETKSIQVTCYGKREDPPTDGHAVDGSSSRVDEKHPRQEKRTTYTVAVP 167          
BLAST of EWM24119.1 vs. NCBI_GenBank
Match: gi|1129192241|gb|OLP97102.1| (Pregnancy-associated glycoprotein [Symbiodinium microadriaticum])

HSP 1 Score: 65.0846 bits (157), Expect = 2.259e-8
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 0
Query:   24 IVVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEK------PWGTPPTVDATESTG 107
            ++V+G SF+GLAA R L           F VT+++ K +FEYTPG+LRA V P+H DAL   L+ ++E        WG    ++  E T 
Sbjct:  781 VLVIGGSFSGLAAGRDLANH--------FLVTIIDAKEFFEYTPGVLRAYVKPKHLDALTFTLQPVIETRMGCKFIWGEVKELNGDEKTA 862          
BLAST of EWM24119.1 vs. NCBI_GenBank
Match: gi|294953625|ref|XP_002787857.1| (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >gi|239902881|gb|EER19653.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 62.3882 bits (150), Expect = 3.897e-8
Identity = 35/91 (38.46%), Postives = 46/91 (50.55%), Query Frame = 0
Query:   25 VVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKP------WGTPPTVDATESTGQV 109
            +V+G  F+G+ A   L        R  F VT+V+ K YFEYTPG+LRA V P H DAL    + ILE+       WG    +D  +    V
Sbjct:    9 LVIGGGFSGMFAANEL--------RGRFDVTLVDAKEYFEYTPGVLRAYVKPAHYDALSFTYQSILERTMGIKFLWGEVTELDGEKQIAHV 91          
BLAST of EWM24119.1 vs. NCBI_GenBank
Match: gi|1129200437|gb|OLQ03677.1| (hypothetical protein AK812_SmicGene13349 [Symbiodinium microadriaticum])

HSP 1 Score: 58.5362 bits (140), Expect = 1.169e-7
Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 0
Query:   16 PENVPPVSIVVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEIL 90
            PE  P   ++V+G   AG+  VR L Q  D        +T+VEPK Y+EYTPGILR L   +H + L VPL E L
Sbjct:   22 PEERP--RLLVIGCGPAGIQIVRNLWQEFD--------LTLVEPKDYYEYTPGILRGLCDEQHLETLQVPLSEAL 86          
BLAST of EWM24119.1 vs. NCBI_GenBank
Match: gi|294937188|ref|XP_002782002.1| (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >gi|239893215|gb|EER13797.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 62.3882 bits (150), Expect = 1.353e-7
Identity = 35/91 (38.46%), Postives = 46/91 (50.55%), Query Frame = 0
Query:   25 VVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKP------WGTPPTVDATESTGQV 109
            +V+G  F+G+ A   L        R  F VT+V+ K YFEYTPG+LRA V P H DAL    + ILE+       WG    +D  +    V
Sbjct:    9 LVIGGGFSGMFAANEL--------RGRFDVTLVDAKEYFEYTPGVLRAYVKPGHYDALSFTYQSILERTMGIKFLWGEVTQLDGEKQIAHV 91          
BLAST of EWM24119.1 vs. NCBI_GenBank
Match: gi|294950751|ref|XP_002786755.1| (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >gi|239901109|gb|EER18551.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 61.6178 bits (148), Expect = 2.175e-7
Identity = 34/91 (37.36%), Postives = 46/91 (50.55%), Query Frame = 0
Query:   25 VVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKP------WGTPPTVDATESTGQV 109
            +V+G  F+G+ A   L        R  F VT+V+ K YFEYTPG+LRA V P H DAL    + +LE+       WG    +D  +    V
Sbjct:    9 LVIGGGFSGMFAANEL--------RGRFDVTLVDAKEYFEYTPGVLRAYVKPAHYDALSFTYQSVLERTMGIKFLWGEVTELDGEKQIAHV 91          
BLAST of EWM24119.1 vs. NCBI_GenBank
Match: gi|1129172404|gb|OLP82071.1| (Apoptosis-inducing factor-like A [Symbiodinium microadriaticum])

HSP 1 Score: 61.6178 bits (148), Expect = 2.601e-7
Identity = 51/185 (27.57%), Postives = 80/185 (43.24%), Query Frame = 0
Query:   16 PENVP-------PVS---IVVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEKPWGTPPTVDATESTGQVTWVKGWLRKIETKSIQVTCYGKREDPPTDGHAVDGSSSRVDEKHPRQEKRTTYTVAVPYDHLLICTGSGYAAPIKAPASLL 190
            PE+VP       PV+   +VV+G  FAGLAAVR L        RR F VT+V+ K +FE++PG++R    P+    L +  + +  K               +V W+ G  +KI+ K + V                         +      +    +A+PYD+ +I  G  Y++ +   ASLL
Sbjct:  190 PESVPLALPSARPVAKKKVVVIGGGFAGLAAVRRL--------RRDFEVTLVDAKEFFEFSPGMIRPYTQPQLYGRLVLDYRSLCNKM--------------KVAWIWGAAKKIDEKEVVV-------------------------QLSNTSTKNAQLLALPYDYCIISAGCHYSSNLWY-ASLL 326          
BLAST of EWM24119.1 vs. NCBI_GenBank
Match: gi|1129194617|gb|OLP99040.1| (hypothetical protein AK812_SmicGene18441 [Symbiodinium microadriaticum])

HSP 1 Score: 60.8474 bits (146), Expect = 4.616e-7
Identity = 33/92 (35.87%), Postives = 46/92 (50.00%), Query Frame = 0
Query:   24 IVVVGASFAGLAAVRTLVQASDPTKRRPFRVTVVEPKGYFEYTPGILRALVAPEHADALCVPLKEILEK------PWGTPPTVDATESTGQV 109
            ++V+G+ F+G    R L        +    VTVV+ K YFEYTPG+LRA V P H DAL   L+ +LE+       WG    +D       +
Sbjct:    6 VLVIGSQFSGTFCAREL--------KSQCSVTVVDAKEYFEYTPGVLRAFVNPSHYDALSFSLQPVLERRLGVKYIWGEVKELDGDRKVANI 89          
The following BLAST results are available for this feature:
BLAST of EWM24119.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585105456|gb|EWM24119.1|1.543e-179100.00hypothetical protein Naga_100404g5 [Nannochloropsi... [more]
gi|553182034|ref|XP_005853667.1|1.095e-116100.00hypothetical protein NGA_0482200 [Nannochloropsis ... [more]
gi|1129192241|gb|OLP97102.1|2.259e-838.89Pregnancy-associated glycoprotein [Symbiodinium mi... [more]
gi|294953625|ref|XP_002787857.1|3.897e-838.46conserved hypothetical protein [Perkinsus marinus ... [more]
gi|1129200437|gb|OLQ03677.1|1.169e-745.33hypothetical protein AK812_SmicGene13349 [Symbiodi... [more]
gi|294937188|ref|XP_002782002.1|1.353e-738.46conserved hypothetical protein [Perkinsus marinus ... [more]
gi|294950751|ref|XP_002786755.1|2.175e-737.36conserved hypothetical protein [Perkinsus marinus ... [more]
gi|1129172404|gb|OLP82071.1|2.601e-727.57Apoptosis-inducing factor-like A [Symbiodinium mic... [more]
gi|1129194617|gb|OLP99040.1|4.616e-735.87hypothetical protein AK812_SmicGene18441 [Symbiodi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6570rna6570Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications