rna6568, rna6568 (mRNA) Nannochloropsis gaditana

Overview
Namerna6568
Unique Namerna6568
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length219
Alignment locationCM002468.1:815116..816033 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102032g1.9382.mrna
Orig protein idgnl|cribi|Naga_102032g1.9382
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:815116..816033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102032g1gene6348Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24121.1cds6552Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6568rna6568-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6568 ID=rna6568|Name=rna6568|organism=Nannochloropsis gaditana|type=mRNA|length=219bp
ATGGGCTTCATCATGGAGCAGGCAGGAGGACGGGCCACCACCGGGTCGGA
GGCCATCCACGATTTGCAGCCCAAGTCCGTGCACCAACGCGTCCCTACTT
TCCTGGGCTCTCCCGAAGATGTGGACGAGCTTGTCGCAAGCCTGAAGAAA
CTTCAACGTTTCGACGGGTCATGCTCGGGAGCATGGAGGTGTGGCAACAC
GCTGCGAGTGAGAGCGTGA
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protein sequence of rna6568

>rna6568-protein ID=rna6568-protein|Name=rna6568|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
SLPPSLPPSFPPSLSPSACRPLAGPHGSPRQVVHRVEQAAGGSRLSGFKL
VLARYCSSPHFFPSPLPGPRWAEEGKTRPAGRGEAAAGRLVRRRAGEERS
LNRTGNDVVGSRRRGGWGEHKTYG
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mRNA from alignment at CM002468.1:815116..816033-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6568 ID=rna6568|Name=rna6568|organism=Nannochloropsis gaditana|type=mRNA|length=918bp|location=Sequence derived from alignment at CM002468.1:815116..816033- (Nannochloropsis gaditana)
TCCCTCCCTCCCTCCCTTCCTCCCTCCTTCCCTCCCTCCCTATCTCCCTC
AGCTTGCAGGCCCCTTGCTGGGCCGCATGGCAGCCCTCGCCAAGTGGTTC
ATCGAGTGGAGCAAGCTGCGGGAGGTTCGAGGCTGTCGGGCTTCAAGTTG
GTTTTGGCGCGTTATTGCTCATCCCCTCACTTTTTTCCTTCACCGCTACC
TGGTCCCAGATGGGCGGAGGAGGGGAAGACGAGGCCGGCGGGGCGGGGGG
AGGCGGCGGCGGGGAGGCTCGTTCGACGGAGGGCGGGAGAAGAAAGAAGC
CTAAATAGAACCGGAAACGACGTGGTGGGGTCGCGCAGGCGGGGTGGGTG
GGGTGAACACAAGACGTACGGCTAGGAAATCCCCGGGGGGGGGGGGGAAT
AGGACCGTGGGAGAAGGCGGGCGTGTATGGGCAGCACGCGGGAAGGCGGT
GAACGGGTGGCTCGTGTCGTGCCTCTGACCGTGCCCAGTCCAGCCAGCCC
TTCGGTCCACAAGCTGAAAAAAGAGGGTGGGATGCAGGGCGCTCCGACCG
CGCGGTGCAGTTGTCGCCTCGGTGGCGGGCGTGTGGGAAGTAGAACAAGG
ACTGGGGGAGGGGTCAGGCCGATGCGGAGGCGGCGAGGGAGGGCCCACAG
AGGGAGGTGCGTCGTCCTCCCGGCGTGAGGAGAGTGGTCAGAAAGAACGA
AGCCGCCGCTGTCGCCGTGTATCGTGCCTGGAGGCCCGAACGGGAGGACC
GGATGCTACCCGGATGTGAGGATCAGGCATTGAATAGGGGCTGGTCAGGC
CCAAGGAGGCAGGGCTCGAGGGAGCCTTTAGGATCTGAAAAGGAATCGGG
GGCGGACGTGCGGTGCACGCAGCGAGCGCCACGGTTTAAAAAGCGAAACC
AACCACTTGTATAACTGT
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Coding sequence (CDS) from alignment at CM002468.1:815116..816033-

>rna6568 ID=rna6568|Name=rna6568|organism=Nannochloropsis gaditana|type=CDS|length=375bp|location=Sequence derived from alignment at CM002468.1:815116..816033- (Nannochloropsis gaditana)
TCCCTCCCTCCCTCCCTTCCTCCCTCCTTCCCTCCCTCCCTATCTCCCTC
AGCTTGCAGGCCCCTTGCTGGGCCGCATGGCAGCCCTCGCCAAGTGGTTC
ATCGAGTGGAGCAAGCTGCGGGAGGTTCGAGGCTGTCGGGCTTCAAGTTG
GTTTTGGCGCGTTATTGCTCATCCCCTCACTTTTTTCCTTCACCGCTACC
TGGTCCCAGATGGGCGGAGGAGGGGAAGACGAGGCCGGCGGGGCGGGGGG
AGGCGGCGGCGGGGAGGCTCGTTCGACGGAGGGCGGGAGAAGAAAGAAGC
CTAAATAGAACCGGAAACGACGTGGTGGGGTCGCGCAGGCGGGGTGGGTG
GGGTGAACACAAGACGTACGGCTAG
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Synonyms
Publications