rna6567, rna6567 (mRNA) Nannochloropsis gaditana

Overview
Namerna6567
Unique Namerna6567
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length454
Alignment locationCM002468.1:814153..814627 +

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Properties
Property NameValue
Productfructose- -bisphosphatase 2
Orig transcript idgnl|cribi|Naga_102887g1.5598.mrna
Orig protein idgnl|cribi|Naga_102887g1.5598
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:814153..814627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102887g1gene6347Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6567rna6567-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24122.1cds6551Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6567 ID=rna6567|Name=rna6567|organism=Nannochloropsis gaditana|type=mRNA|length=454bp
TTTCTTTTCTTCCCCTCCCGCCCTCCCTCCCTCCCTCCTTCTCTCCCTCA
GTCTTCTTCCGCAATGAGGGTGAGGGCCCCCCTATCGTGGATCCCTCCAT
CAACCCGTGGCCGGTATACAACGGCTTCCTCGATTTCTTGTGCGGAGGAC
AGCTCGGAAGAAAAAAGATGGTCCGCTTTTCCTCCTGGCAGGTATGCCCT
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCCTTTTTTC
CTTGTCGATTCCAAGCGGCCTCAGCCCTTCCTCGGTGGGAACAAATCGAT
GAGAACTGCAACCTTGCGTGGAGTGGAGGGCTTTCGTCTTTTTTTTTGGG
GGGGGATTGGGATAAGGATTGATCGATTTCTTTGAGAGGGGATCGGGTTT
CATCGATCTCTTCGGGGCTCCTCCTCCTGCTCTCTTGTAACCGCAACCTC
CCCC
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protein sequence of rna6567

>rna6567-protein ID=rna6567-protein|Name=rna6567|organism=Nannochloropsis gaditana|type=polypeptide|length=72bp
MGFIMEQAGGRATTGSEAIHDLQPKSVHQRVPTFLGSPEDVDELVASLKK
LQRFDGSCSGAWRCGNTLRVRA
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mRNA from alignment at CM002468.1:814153..814627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6567 ID=rna6567|Name=rna6567|organism=Nannochloropsis gaditana|type=mRNA|length=475bp|location=Sequence derived from alignment at CM002468.1:814153..814627+ (Nannochloropsis gaditana)
ATGGGCTTCATCATGGAGCAGGCAGGAGGACGGGTACGTAATCCATCATg
cgtcatccccctcctggaTCATCTCCCTCATTTGTTGTCTTCGCCACCTT
TGGCGCCCTGGGGCCCGTCGTGGGATGTGGCCGCTTCCTAGACAAGGTCC
TCTGTCGGCTATGTGTTCCACCCCCGCGGACGCCCTCACGCCCAACCGTC
ATTTCAAAAATCCGTTACCCCAGGCCACCACCGGGTCGGAGGCCATCCAC
GATTTGCAGCCCAAGTCCGTGCACCAACGCGTCCCTACTTTCCTGGGCTC
TCCCGAAGATGTGGACGAGCTTGTCGCAAGCCTGAAGAAGTGAGCAACGG
CAGGCGTTTGAAAGATTCAAACTTCAGCGGTTTGAATTTTGAATATGTGT
GCGAGACTTCAACGTTTCGACGGGTCATGCTCGGGAGCATGGAGGTGTGG
CAACACGCTGCGAGTGAGAGCGTGA
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Coding sequence (CDS) from alignment at CM002468.1:814153..814627+

>rna6567 ID=rna6567|Name=rna6567|organism=Nannochloropsis gaditana|type=CDS|length=657bp|location=Sequence derived from alignment at CM002468.1:814153..814627+ (Nannochloropsis gaditana)
ATGGGCTTCATCATGGAGCAGGCAGGAGGACGGGCCACCACCGGGTCGGA
GGCCATCCACGATTTGCAGCCCAAGTCCGTGCACCAACGCGTCCCTACTT
TCCTGGGCTCTCCCGAAGATGTGGACGAGCTTGTCGCAAGCCTGAAGAAA
CTTCAACGTTTCGACGGGTCATGCTCGGGAGCATGGAGGTGTGGCAACAC
GCTGCGAGTGAGAGCGTGAATGGGCTTCATCATGGAGCAGGCAGGAGGAC
GGGCCACCACCGGGTCGGAGGCCATCCACGATTTGCAGCCCAAGTCCGTG
CACCAACGCGTCCCTACTTTCCTGGGCTCTCCCGAAGATGTGGACGAGCT
TGTCGCAAGCCTGAAGAAACTTCAACGTTTCGACGGGTCATGCTCGGGAG
CATGGAGGTGTGGCAACACGCTGCGAGTGAGAGCGTGAATGGGCTTCATC
ATGGAGCAGGCAGGAGGACGGGCCACCACCGGGTCGGAGGCCATCCACGA
TTTGCAGCCCAAGTCCGTGCACCAACGCGTCCCTACTTTCCTGGGCTCTC
CCGAAGATGTGGACGAGCTTGTCGCAAGCCTGAAGAAACTTCAACGTTTC
GACGGGTCATGCTCGGGAGCATGGAGGTGTGGCAACACGCTGCGAGTGAG
AGCGTGA
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Synonyms
Publications