rna6563, rna6563 (mRNA) Nannochloropsis gaditana

Overview
Namerna6563
Unique Namerna6563
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length354
Alignment locationCM002468.1:803945..805096 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101856g2.4022.mrna
Orig protein idgnl|cribi|Naga_101856g2.4022
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:803945..805096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101856g2gene6341Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6563rna6563-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24126.1cds6547Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6563 ID=rna6563|Name=rna6563|organism=Nannochloropsis gaditana|type=mRNA|length=354bp
ATGCATGTTATAAGACGGGCAGTGCATGATCGATTCATTAGTGGGGTATT
AAGAGGTGATGAAACGCTTTGCAAGACAATGAAATGTACCAAATTTACGA
CCGATGAATGTGGAGGGATAGATGTCTTTATGACCGCACGGCTGTGGCTA
ATTTTTGGCCCTATACCTTCCCGCAGAACAGCTCCTCGCTTCGGCTCCGA
GCTACCATCATCCAAGATAATGCGCGTGATATTATCCCTCCTTCTTCTAG
CGGTGGCCACCACCACCACCACGTCCGCCCTACGACATCCTTTGAAGCAT
TATGAGGAGAAGTTTCGCGCGTGGATCCAGGTTAGCTTACAAGGTGCGCA
TTAA
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protein sequence of rna6563

>rna6563-protein ID=rna6563-protein|Name=rna6563|organism=Nannochloropsis gaditana|type=polypeptide|length=112bp
LDSSFFPPSVFLSSFPYFSLLLSSFLCLPRFSPSSFTPPSSPPYTYPPSL
PPSIRWGEDGYIRLQRGVRQEGGQCGLLMAASYPLRLEGGREGGREGGRE
DGCTYILSVAGL
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mRNA from alignment at CM002468.1:803945..805096+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6563 ID=rna6563|Name=rna6563|organism=Nannochloropsis gaditana|type=mRNA|length=1152bp|location=Sequence derived from alignment at CM002468.1:803945..805096+ (Nannochloropsis gaditana)
CTTgattcttctttcttccctccttctgtttttttgtcttcctttcccta
tttttcccttctcctctcgtctttcctttgtctcccacgcttctctccct
cttctttcacacccccctcgtccccaccATACActtatcctccctctctc
cctccctctatcaGGTGGGGTGAGGACGGATACATTCGCCTGCAACGTGG
CGTCcgtcaggagggaggtcagTGCGGGCTACTGATGGCGgcctcctacc
ccctccgtctagagggagggagggagggagggagggagggagggagggag
gacgggtgtACATACATCTTGTCAGTAGCAGGGCTGTGAAGATAGGGTAC
AAGCAGAGATACTTTAGGGCCGCTGGATATTCAAAAACGCAGGGGTTGGG
ACAGGGGGCgcggctggagggagagagggagggagggagagagggaggga
gggagggagggaggatggtgtGCATGGAAATTTGTCAGAAGGGGCGatcg
agaaggaagcgaagtgCAAAGAGAGCGATAGAGATGAAGAGGCAATATGT
GTTGGCCCTTGGGAAGGAAGTTAAGGAGACGGAAATCTATGATGGATCCC
TACAAGACTCtggagagtgaggagagaaaggatgtggggaggagagatga
ACCGAGAAAATGGTGCGAAAAAGCGAGACGAGAACGAATCTATGTGagtg
aggcggagggaatggattctaaaggggaggagggaagagaccGGTGATGG
GATAGGAAGGCGCGTGCCTCGCCTGTTGGTACGTGGACAACAAAAGgttg
aagacgaagagaatgAGGCAAAACATCGAAGATAGTGATGAGGACAAAAG
AAGCAGAAGGCGTGGTTGGAAATTGAAGTCCAAaattcccccccccccca
aaaaaggggggaagtaATGGGAAGGTTCGGTAGAGAGGATGGGTGTTGCC
AGCCTCAATCTCAAGCATCTCCTTCCCGAATTACAGACTTaaaaggcaaa
gaaagaaattcGCGTAAGACGCTTCTGAACCTTGATCTGGGAcgatgagg
ggaggggaggggcccatCGCCGTGGGGCTCGTTACCTCCCACGGGAGTGC
GGAAGACGATCGTGGGAAAAGCGTGGAATTCTGCTGTTTctgctgctttt
cc
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Coding sequence (CDS) from alignment at CM002468.1:803945..805096+

>rna6563 ID=rna6563|Name=rna6563|organism=Nannochloropsis gaditana|type=CDS|length=339bp|location=Sequence derived from alignment at CM002468.1:803945..805096+ (Nannochloropsis gaditana)
CTTgattcttctttcttccctccttctgtttttttgtcttcctttcccta
tttttcccttctcctctcgtctttcctttgtctcccacgcttctctccct
cttctttcacacccccctcgtccccaccATACActtatcctccctctctc
cctccctctatcaGGTGGGGTGAGGACGGATACATTCGCCTGCAACGTGG
CGTCcgtcaggagggaggtcagTGCGGGCTACTGATGGCGgcctcctacc
ccctccgtctagagggagggagggagggagggagggagggagggagggag
gacgggtgtACATACATCTTGTCAGTAGCAGGGCTGTGA
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Synonyms
Publications