EWM24126.1, cds6547 (CDS) Nannochloropsis gaditana

Overview
NameEWM24126.1
Unique Namecds6547
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:803945..804283 +

Link to JBrowse

Properties
Property NameValue
Start range803945
Start range.
Protein idEWM24126.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101856g2.4022.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:803945..804283 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24126.1 vs. NCBI_GenBank
Match: gi|585105474|gb|EWM24126.1| (hypothetical protein Naga_101856g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 216.853 bits (551), Expect = 3.004e-71
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query:    1 LDSSFFPPSVFLSSFPYFSLLLSSFLCLPRFSPSSFTPPSSPPYTYPPSLPPSIRWGEDGYIRLQRGVRQEGGQCGLLMAASYPLRLEGGREGGREGGREDGCTYILSVAGL 112
            LDSSFFPPSVFLSSFPYFSLLLSSFLCLPRFSPSSFTPPSSPPYTYPPSLPPSIRWGEDGYIRLQRGVRQEGGQCGLLMAASYPLRLEGGREGGREGGREDGCTYILSVAGL
Sbjct:    1 LDSSFFPPSVFLSSFPYFSLLLSSFLCLPRFSPSSFTPPSSPPYTYPPSLPPSIRWGEDGYIRLQRGVRQEGGQCGLLMAASYPLRLEGGREGGREGGREDGCTYILSVAGL 112          
BLAST of EWM24126.1 vs. NCBI_GenBank
Match: gi|374530932|gb|AEP83812.2| (cysteine endopeptidase EP8 [Secale cereale x Triticum turgidum subsp. durum])

HSP 1 Score: 56.9954 bits (136), Expect = 3.667e-7
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 0
Query:   56 WGEDGYIRLQRGVRQEGGQCGLLMAASYPLRLEGGREGGREGGRED 101
            WGE GYIR+QRGV Q  GQCG+ M ASYP +        REG   D
Sbjct:  317 WGEKGYIRMQRGVSQAEGQCGIAMQASYPTKSAPRARAVREGSHTD 362          
BLAST of EWM24126.1 vs. NCBI_GenBank
Match: gi|475614495|gb|EMT29100.1| (Vignain [Aegilops tauschii])

HSP 1 Score: 56.225 bits (134), Expect = 5.407e-7
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 0
Query:   56 WGEDGYIRLQRGVRQEGGQCGLLMAASYPLRLEGGREGGREGGRED 101
            WGE GYIR+QRGV Q  GQCG+ M ASYP +        REG   D
Sbjct:  306 WGEKGYIRMQRGVSQPEGQCGIAMQASYPTKSAPHARTVREGSHTD 351          
BLAST of EWM24126.1 vs. NCBI_GenBank
Match: gi|1149822981|ref|XP_020169664.1| (vignain-like [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 56.225 bits (134), Expect = 6.456e-7
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 0
Query:   56 WGEDGYIRLQRGVRQEGGQCGLLMAASYPLRLEGGREGGREGGRED 101
            WGE GYIR+QRGV Q  GQCG+ M ASYP +        REG   D
Sbjct:  317 WGEKGYIRMQRGVSQPEGQCGIAMQASYPTKSAPHARTVREGSHTD 362          
The following BLAST results are available for this feature:
BLAST of EWM24126.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585105474|gb|EWM24126.1|3.004e-71100.00hypothetical protein Naga_101856g2, partial [Nanno... [more]
gi|374530932|gb|AEP83812.2|3.667e-754.35cysteine endopeptidase EP8 [Secale cereale x Triti... [more]
gi|475614495|gb|EMT29100.1|5.407e-754.35Vignain [Aegilops tauschii][more]
gi|1149822981|ref|XP_020169664.1|6.456e-754.35vignain-like [Aegilops tauschii subsp. tauschii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6563rna6563Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications