rna6562, rna6562 (mRNA) Nannochloropsis gaditana

Overview
Namerna6562
Unique Namerna6562
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length638
Alignment locationCM002468.1:801673..803007 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101841g1.5539.mrna
Orig protein idgnl|cribi|Naga_101841g1.5539
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:801673..803007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101841g1gene6340Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6562rna6562-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24127.1cds6546Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6562 ID=rna6562|Name=rna6562|organism=Nannochloropsis gaditana|type=mRNA|length=638bp
AGTCCACCGCTCTCCTGATTTTCCTGCAGCGCAGACCTGTGCTCTCGACC
GCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCCCGGGTCCTCCGCC
GGTGAATCCCCAGCCCCAGTCCAGTCAGGAAAGGATCGAGGTCGCCGCGT
TAAAAAAAAACTAAATCGGGTCTTTTTTTCGAGGGACAAAAGTCGGCATG
GGCCTGTCGGACTATAAAGTAATGACCTCGTCGAGTAAGTGCACTGTATA
TAACAGCCAGCACGTTATCATCGACAAAATGCACGCGCTGCGTGTGGCAG
CGCCGTATCCCAAGGAAGCGGGTGCGGGCCATGACAGCAATACGAACGCG
AGGAATGAGGCCATAAAGGAGGACGAGGAACAGGGAAATCAAAGTGGGCA
GGATGAAAGGATGCAACATTGCGGCAATCCACGGGAAGAACAAGGAAAAA
AACCTTTGAGCGAACAGATGGGCAAAAATACGTCTCCAGGTGCTCTTCGA
AGGCAAACTACACTGCCCCCCGACGGATTTCTCACCCGCGTGATGGTTGA
GGAGGACATTGAAGAGGTCGCTACCCTGTGCAAGGAGGCATTCGACGCGC
AGAACAAACTCACAAAGTAGGATAAAAAGAATGCAAGA
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protein sequence of rna6562

>rna6562-protein ID=rna6562-protein|Name=rna6562|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MHVIRRAVHDRFISGVLRGDETLCKTMKCTKFTTDECGGIDVFMTARLWL
IFGPIPSRRTAPRFGSELPSSKIMRVILSLLLLAVATTTTTSALRHPLKH
YEEKFRAWIQVSLQGAH
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mRNA from alignment at CM002468.1:801673..803007+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6562 ID=rna6562|Name=rna6562|organism=Nannochloropsis gaditana|type=mRNA|length=1335bp|location=Sequence derived from alignment at CM002468.1:801673..803007+ (Nannochloropsis gaditana)
ATGCATGTTATAAGACGGGCAGTGCATGATCGATTCATTAGTGGGGTATT
AAGAGGTGATGAAACGCTTTGCAAGACAATGAAATGTACCAAATTTACGA
CCGTCCTGAGATATGCGCGGAAGCTAGCACGCTCCCCACCATAGAAAGAA
ATAACTATCAGCAGATTTATGGCGGTCCTTTTCCTATTTACTTTATCTCG
GCAGACTTTGGCGCTATTCTATGACCATACACAAGCTACCGCGAGCCTCT
GCAGATCGATCGCTCAGAACGTCAGGCAATCAGGCGAATTTAATGAACAG
CACTCGCATTGAACGCCGGAGCGTGATCAAGCGCTTTCAAGCACATGACT
CCAGGATGAATGTGGAGGGATAGATGTCTTTATGACCGCACGGCTGTGGT
AACAAGCTACCGCGAGCCCTCTGCAGCTCGATCGCTCAGAACGTCAGGCA
CTCAGTGGGGTTCAATGAACAGCACTTGCATTGAACTCTTGCGCACGATC
AAGAACGCTCAAGCACGTGGTTGCGGGATATTGAACGTCACACGGAGTGA
TAACATGGTTGTAGCGGTCGTGACATGGGTCCATCGTGCACTTTTTGCGT
TTCTTCGTCCTTTTATTCTGGTACattgaggggggaggacggaacaCGCA
TGCAAAGGAAGAAAGTCCGCCTTGCCCGTGCTCATTATGCCCGCGATCTC
CCGCCCTGATTTCATTGAAGTGCACGAACAGAAAAGGCACCCCAATCATT
GCACGTCCTTTATATAGAAACATGTCGTAGAAATGTACGCGACCCTTTTC
AAACTTGCAATATCAGGCTAATTTTTGGCCCTATACCTTCCCGCAGAACA
GCTCCTCGCTTCGGCTCCGAGCTACCATCATCCAAGATAATGCGCGTGAT
AttatccctccttcttctagcggtggccaccaccaccaccacgtccgccC
TACGACATCCTTTGAAGCATTATGAGGAGAAGTTTCGCGCGTGGATCCAG
GTTAGTGGACCAAAAATTGAGGCAGAAAGGATAGAACAAAAAGAAGTGAC
ATGAGGTTGCCCTGGATATGCCCTGGAGGTGATAGTCTGAACGATACGCA
CGCATGACATTATCCTGCCCTTGGCATGTCATTTCAAGTGTCTCGATGCC
GTTGTACGTCCTGGCATATTTATGGCCACGGTGAAAAGATGACaatggga
aaagaggacagTGGAGGTCTATCGGATCCGGCCCGCGGCTAGAGGCAACC
ATGGCAAGGCCTTTACTGCCTCCCtaatttttctttctcttgctaCATGC
TTGCCTTTATGGCAGGCTTACAAGGTGCGCATTAA
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Coding sequence (CDS) from alignment at CM002468.1:801673..803007+

>rna6562 ID=rna6562|Name=rna6562|organism=Nannochloropsis gaditana|type=CDS|length=1416bp|location=Sequence derived from alignment at CM002468.1:801673..803007+ (Nannochloropsis gaditana)
ATGCATGTTATAAGACGGGCAGTGCATGATCGATTCATTAGTGGGGTATT
AAGAGGTGATGAAACGCTTTGCAAGACAATGAAATGTACCAAATTTACGA
CCGATGAATGTGGAGGGATAGATGTCTTTATGACCGCACGGCTGTGGCTA
ATTTTTGGCCCTATACCTTCCCGCAGAACAGCTCCTCGCTTCGGCTCCGA
GCTACCATCATCCAAGATAATGCGCGTGATAttatccctccttcttctag
cggtggccaccaccaccaccacgtccgccCTACGACATCCTTTGAAGCAT
TATGAGGAGAAGTTTCGCGCGTGGATCCAGGTTAGCTTACAAGGTGCGCA
TTAAATGCATGTTATAAGACGGGCAGTGCATGATCGATTCATTAGTGGGG
TATTAAGAGGTGATGAAACGCTTTGCAAGACAATGAAATGTACCAAATTT
ACGACCGATGAATGTGGAGGGATAGATGTCTTTATGACCGCACGGCTGTG
GCTAATTTTTGGCCCTATACCTTCCCGCAGAACAGCTCCTCGCTTCGGCT
CCGAGCTACCATCATCCAAGATAATGCGCGTGATAttatccctccttctt
ctagcggtggccaccaccaccaccacgtccgccCTACGACATCCTTTGAA
GCATTATGAGGAGAAGTTTCGCGCGTGGATCCAGGTTAGCTTACAAGGTG
CGCATTAAATGCATGTTATAAGACGGGCAGTGCATGATCGATTCATTAGT
GGGGTATTAAGAGGTGATGAAACGCTTTGCAAGACAATGAAATGTACCAA
ATTTACGACCGATGAATGTGGAGGGATAGATGTCTTTATGACCGCACGGC
TGTGGCTAATTTTTGGCCCTATACCTTCCCGCAGAACAGCTCCTCGCTTC
GGCTCCGAGCTACCATCATCCAAGATAATGCGCGTGATAttatccctcct
tcttctagcggtggccaccaccaccaccacgtccgccCTACGACATCCTT
TGAAGCATTATGAGGAGAAGTTTCGCGCGTGGATCCAGGTTAGCTTACAA
GGTGCGCATTAAATGCATGTTATAAGACGGGCAGTGCATGATCGATTCAT
TAGTGGGGTATTAAGAGGTGATGAAACGCTTTGCAAGACAATGAAATGTA
CCAAATTTACGACCGATGAATGTGGAGGGATAGATGTCTTTATGACCGCA
CGGCTGTGGCTAATTTTTGGCCCTATACCTTCCCGCAGAACAGCTCCTCG
CTTCGGCTCCGAGCTACCATCATCCAAGATAATGCGCGTGATAttatccc
tccttcttctagcggtggccaccaccaccaccacgtccgccCTACGACAT
CCTTTGAAGCATTATGAGGAGAAGTTTCGCGCGTGGATCCAGGTTAGCTT
ACAAGGTGCGCATTAA
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Synonyms
Publications