EWM24127.1, cds6546 (CDS) Nannochloropsis gaditana

Overview
NameEWM24127.1
Unique Namecds6546
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:801673..801774 +
Alignment locationCM002468.1:802027..802070 +
Alignment locationCM002468.1:802489..802676 +
Alignment locationCM002468.1:802988..803007 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24127.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101841g1.5539.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:801673..801774 +
CM002468.1supercontigCM002468.1:802027..802070 +
CM002468.1supercontigCM002468.1:802489..802676 +
CM002468.1supercontigCM002468.1:802988..803007 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24127.1 vs. NCBI_GenBank
Match: gi|585105477|gb|EWM24127.1| (hypothetical protein Naga_101841g1 [Nannochloropsis gaditana])

HSP 1 Score: 241.121 bits (614), Expect = 9.637e-81
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MHVIRRAVHDRFISGVLRGDETLCKTMKCTKFTTDECGGIDVFMTARLWLIFGPIPSRRTAPRFGSELPSSKIMRVILSLLLLAVATTTTTSALRHPLKHYEEKFRAWIQVSLQGAH 117
            MHVIRRAVHDRFISGVLRGDETLCKTMKCTKFTTDECGGIDVFMTARLWLIFGPIPSRRTAPRFGSELPSSKIMRVILSLLLLAVATTTTTSALRHPLKHYEEKFRAWIQVSLQGAH
Sbjct:    1 MHVIRRAVHDRFISGVLRGDETLCKTMKCTKFTTDECGGIDVFMTARLWLIFGPIPSRRTAPRFGSELPSSKIMRVILSLLLLAVATTTTTSALRHPLKHYEEKFRAWIQVSLQGAH 117
The following BLAST results are available for this feature:
BLAST of EWM24127.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105477|gb|EWM24127.1|9.637e-81100.00hypothetical protein Naga_101841g1 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6562rna6562Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications