rna6560, rna6560 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6560
Unique Name	rna6560
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	858
Alignment location	CM002468.1:797829..799587 -

Link to JBrowse

Properties


Property Name	Value
Product	Ribosomal protein L28e
Orig transcript id	gnl\|cribi\|Naga_101068g1.8436.mrna
Orig protein id	gnl\|cribi\|Naga_101068g1.8436
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:797829..799587 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101068g1	gene6338	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6560	rna6560-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24128.1	cds6544	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:797829..799587-
coding sequence from alignment at CM002468.1:797829..799587-

mRNA sequence

>rna6560 ID=rna6560|Name=rna6560|organism=Nannochloropsis gaditana|type=mRNA|length=858bp
GATGGAATGGGAGGAACCCGACGATTTAAACCTTCCACCGGTGCCTCTAG
ATGAAAAATGGAGGGACGAGGAGGAGGACGAGGAGGAGGACGAGGAGGAA
GAGGAGCTACGTCGTTTTCTGCAGAGCGAGGAGAGTGACGGCTTGCTCAT
CACTTTGGAGTCAGAGAAAAGGCAGGAGAAGGCAGGCACCGGAGGGAAGA
AAATGTCGTCCAAAAAGGACACCCGACGCACCCGCAAAGAATTGTGGCGG
GATTTTCACATCCATACGGCTCATCTTGCCCTCTTGACGCAACGGACCCG
GCTTCTGTCCACCCATGCCTCCCACCCTTCCCTCCTCGCAGCCTCGACGG
CCGCCCTCCCTCCCGCCCTCCGCCGTGGCCTTAGTCAGGGCCCCACCCTC
TTAGGCCTTCAGCGACTTTCCCGTTGGTTTCAAGACACCTTCACCCAGCT
CTCCGATGCCCACTTGAGGGAGGAGGAAGGCAAGGAAGGTGCGTCTCCTC
CGGAGCTGTTGTCGGCCCTGGAAGCAAAGGAAGGAAGTGGGGCCGTGCTG
GTTCAGATTTTACTGGCTATGCTGCGGGGAGTGGGGGCGAAAGCCCGCTT
GGTCTGCCCCTTGTCGCCCAGGAGCTACCAGCACCCTCCCTATCTGCTCC
GCCGGCGACGGGAGAAAGGGAGAGCCGTGGATTTGACAGAGGAGGGAGGG
AAGGGAGGGACCAAAGCGGAGGGGAAGGGGGAGAAGAGGAAGATAAGAAG
GTTGCTGGCATCCAAGGAAGGAGCGAGGCCGTTGCCAGGGTGTGGCGTGT
GGGTGGAGGTGTTTGTGAGGAAAGGAGGGAGGGAGGGAGGGCGGACAGGA
GGGGAGGA

protein sequence of rna6560

>rna6560-protein ID=rna6560-protein|Name=rna6560|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLA
NSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVR
SIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVSRK
EQGRCGGDLALCKGAGGEGALKASELESRSKSAGTSKGRDTFTEGPLDFV
FGGGE

mRNA from alignment at CM002468.1:797829..799587-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6560 ID=rna6560|Name=rna6560|organism=Nannochloropsis gaditana|type=mRNA|length=1759bp|location=Sequence derived from alignment at CM002468.1:797829..799587- (Nannochloropsis gaditana)
ATGTCTGACGCTTTGGTTTGGGAATGTATCAAGGTGAGTAGAGGAATGGT
GGAAAGAGGTGGGAGGCTGATGATGTCGATGTAGGGTAATACCACCAAAA
AAAGACTGTCGAGATTTCGATGAGATGGGCTGGCGATAGAGAAGCACCGT
TGTAACGCTTGCAAAGAAATACTCGAAGAGTTTGTGTGAGCGCGGCCCGC
TGCGTCATGTTGCAACGTAGAAAATCTGGAGAGGACGACAGACTTGAGTG
AAGAAAAGCTTTGCATCACGTTGGTGGGACCCGTCTGTTTAGTATTTGAA
AGCGCATCCATGTGAGATCACGGAGGGTGAGATGGTGAGGTGTAAGGCAA
TGCACGAGATATGTGAATGCAGGGCTTTGGCAAGTCTCGTGCAAGGCCTT
AAGGCAAAGTGAAGGGGGGCAGGAGCACGGAAATGGCTTGTGGTATCGGG
ACGTGCGTCGAGCGTATGCATCCCGGCATGGCATTGTCATTGGTCAACAT
TGTCTGTAAAAAGGCTTTCCTTGTTAGCATTTTCCTACCTCCTTCCCTCT
TTCTCCCCTCCCTTTTCATCTTCATCAAGCACTAAGCCGGGAGTGCACTC
CACCGCCTGCGTTTTTCTCATTGAGCCCTCCCTCCCTCCCTCCCTCCCTA
CCTCCCTACCTCCCTCCCTTTCTATGTCAGAACAATAACTGCTTTCTCAC
GAAACGGGGCAGGACCGCGCGTGTCGGCGGCGTGCAGTTTTCGTCGGAAC
CCTTCAACTTGGCCAAGAAGAACAGTTTCAAGAACAGCGGCCTCGCCAAC
AGCAAGGCCGTGGACCTGTCCGTGGTGGAAGGCGGGAAATATGGGCCGAA
GATTACCATGGCGACCAAGGTTGGGAGGGGGGAGGGGGGAAGTGAGGGAG
GGAGGGAGGGAGGGATAGCGGTCTGGGCAGCAACCTTGCGCGTAGCAAGA
GGGCGCCTCTCCGTATCAAACGAGCATTTTCTCACCCCTCGATGCCCCTT
CTTGTCTCCTCTCTCCTCCTCTCTTCCTCTTCGCCCTTCAGGGTAAGAAA
TCGTTGAAGAAGCCCGCGACGCTGGCGAACGAAACACCGTTGAACAAGGC
TTTTGCCACCTCTGTGAGGAGCATCAAGGGCGTGACGGAGAAGTGCGGGT
ATAGGAAAGACTTGCAACCGATCGCCTTGGCCCGGTACTCTTTGTTGAAG
AGGTAGGAAGGGAGGGAGAGAAGGAAGGAAGGAGAGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAAGGAGGAGGAAGGTTAGAAGGAAGGGAGTTG
ATAGAAGAATGGAAAGCGATGGCCGCGCACGGATTGAGGCTGGTGGGCAT
GTTTATGAGATGGCAACTCCTCATCTGGTATCCCCACTGGCTTCCTTTTT
ACCCTTCCTCAATCGCGGTGTGGTGGCCTCCATGGTCAGGTATACGCAAG
TAAAGAAAGGCCTGGCGAAGCCGATCCCCGTCAAGATGGGCCGCGTCAGC
CGTAAGGAGTAAGGTCCTTGACTAAGACTCGAAAAAGCATGGAAGGGAGG
GAAGATAAAGAGTAGGGGGTGTACGTGGATGGAGGAGGAGCAGGCAAGGG
CGCTGTGGCGGTGATCTGGCGCTTTGCAAGGGTGCAGGCGGGGAAGGTGC
TTTGAAAGCGTCAGAACTAGAAAGCCGAAGTAAATCAGCTGGAACTAGCA
AGGGAAGAGATACTTTTACGGAAGGACCTCTGGATTTTGTTTTTGGGGGG
GGGGAATGA

Coding sequence (CDS) from alignment at CM002468.1:797829..799587-

>rna6560 ID=rna6560|Name=rna6560|organism=Nannochloropsis gaditana|type=CDS|length=3090bp|location=Sequence derived from alignment at CM002468.1:797829..799587- (Nannochloropsis gaditana)
GCAAGGGCGCTGTGGCGGTGATCTGGCGCTTTGCAAGGGTGCAGGCGGGG
AAGGTGCTTTGAAAGCGTCAGAACTAGAAAGCCGAAGTAAATCAGCTGGA
ACTAGCAAGGGAAGAGATACTTTTACGGAAGGACCTCTGGATTTTGTTTT
TGGGGGGGGGGAATGAGTATACGCAAGTAAAGAAAGGCCTGGCGAAGCCG
ATCCCCGTCAAGATGGGCCGCGTCAGCCGTAAGGAGGTAAGAAATCGTTG
AAGAAGCCCGCGACGCTGGCGAACGAAACACCGTTGAACAAGGCTTTTGC
CACCTCTGTGAGGAGCATCAAGGGCGTGACGGAGAAGTGCGGGTATAGGA
AAGACTTGCAACCGATCGCCTTGGCCCGGTACTCTTTGTTGAAGAGAACA
ATAACTGCTTTCTCACGAAACGGGGCAGGACCGCGCGTGTCGGCGGCGTG
CAGTTTTCGTCGGAACCCTTCAACTTGGCCAAGAAGAACAGTTTCAAGAA
CAGCGGCCTCGCCAACAGCAAGGCCGTGGACCTGTCCGTGGTGGAAGGCG
GGAAATATGGGCCGAAGATTACCATGGCGACCAAGATGTCTGACGCTTTG
GTTTGGGAATGTATCAAGGCAAGGGCGCTGTGGCGGTGATCTGGCGCTTT
GCAAGGGTGCAGGCGGGGAAGGTGCTTTGAAAGCGTCAGAACTAGAAAGC
CGAAGTAAATCAGCTGGAACTAGCAAGGGAAGAGATACTTTTACGGAAGG
ACCTCTGGATTTTGTTTTTGGGGGGGGGGAATGAGTATACGCAAGTAAAG
AAAGGCCTGGCGAAGCCGATCCCCGTCAAGATGGGCCGCGTCAGCCGTAA
GGAGGTAAGAAATCGTTGAAGAAGCCCGCGACGCTGGCGAACGAAACACC
GTTGAACAAGGCTTTTGCCACCTCTGTGAGGAGCATCAAGGGCGTGACGG
AGAAGTGCGGGTATAGGAAAGACTTGCAACCGATCGCCTTGGCCCGGTAC
TCTTTGTTGAAGAGAACAATAACTGCTTTCTCACGAAACGGGGCAGGACC
GCGCGTGTCGGCGGCGTGCAGTTTTCGTCGGAACCCTTCAACTTGGCCAA
GAAGAACAGTTTCAAGAACAGCGGCCTCGCCAACAGCAAGGCCGTGGACC
TGTCCGTGGTGGAAGGCGGGAAATATGGGCCGAAGATTACCATGGCGACC
AAGATGTCTGACGCTTTGGTTTGGGAATGTATCAAGGCAAGGGCGCTGTG
GCGGTGATCTGGCGCTTTGCAAGGGTGCAGGCGGGGAAGGTGCTTTGAAA
GCGTCAGAACTAGAAAGCCGAAGTAAATCAGCTGGAACTAGCAAGGGAAG
AGATACTTTTACGGAAGGACCTCTGGATTTTGTTTTTGGGGGGGGGGAAT
GAGTATACGCAAGTAAAGAAAGGCCTGGCGAAGCCGATCCCCGTCAAGAT
GGGCCGCGTCAGCCGTAAGGAGGTAAGAAATCGTTGAAGAAGCCCGCGAC
GCTGGCGAACGAAACACCGTTGAACAAGGCTTTTGCCACCTCTGTGAGGA
GCATCAAGGGCGTGACGGAGAAGTGCGGGTATAGGAAAGACTTGCAACCG
ATCGCCTTGGCCCGGTACTCTTTGTTGAAGAGAACAATAACTGCTTTCTC
ACGAAACGGGGCAGGACCGCGCGTGTCGGCGGCGTGCAGTTTTCGTCGGA
ACCCTTCAACTTGGCCAAGAAGAACAGTTTCAAGAACAGCGGCCTCGCCA
ACAGCAAGGCCGTGGACCTGTCCGTGGTGGAAGGCGGGAAATATGGGCCG
AAGATTACCATGGCGACCAAGATGTCTGACGCTTTGGTTTGGGAATGTAT
CAAGGCAAGGGCGCTGTGGCGGTGATCTGGCGCTTTGCAAGGGTGCAGGC
GGGGAAGGTGCTTTGAAAGCGTCAGAACTAGAAAGCCGAAGTAAATCAGC
TGGAACTAGCAAGGGAAGAGATACTTTTACGGAAGGACCTCTGGATTTTG
TTTTTGGGGGGGGGGAATGAGTATACGCAAGTAAAGAAAGGCCTGGCGAA
GCCGATCCCCGTCAAGATGGGCCGCGTCAGCCGTAAGGAGGTAAGAAATC
GTTGAAGAAGCCCGCGACGCTGGCGAACGAAACACCGTTGAACAAGGCTT
TTGCCACCTCTGTGAGGAGCATCAAGGGCGTGACGGAGAAGTGCGGGTAT
AGGAAAGACTTGCAACCGATCGCCTTGGCCCGGTACTCTTTGTTGAAGAG
AACAATAACTGCTTTCTCACGAAACGGGGCAGGACCGCGCGTGTCGGCGG
CGTGCAGTTTTCGTCGGAACCCTTCAACTTGGCCAAGAAGAACAGTTTCA
AGAACAGCGGCCTCGCCAACAGCAAGGCCGTGGACCTGTCCGTGGTGGAA
GGCGGGAAATATGGGCCGAAGATTACCATGGCGACCAAGATGTCTGACGC
TTTGGTTTGGGAATGTATCAAGGCAAGGGCGCTGTGGCGGTGATCTGGCG
CTTTGCAAGGGTGCAGGCGGGGAAGGTGCTTTGAAAGCGTCAGAACTAGA
AAGCCGAAGTAAATCAGCTGGAACTAGCAAGGGAAGAGATACTTTTACGG
AAGGACCTCTGGATTTTGTTTTTGGGGGGGGGGAATGAGTATACGCAAGT
AAAGAAAGGCCTGGCGAAGCCGATCCCCGTCAAGATGGGCCGCGTCAGCC
GTAAGGAGGTAAGAAATCGTTGAAGAAGCCCGCGACGCTGGCGAACGAAA
CACCGTTGAACAAGGCTTTTGCCACCTCTGTGAGGAGCATCAAGGGCGTG
ACGGAGAAGTGCGGGTATAGGAAAGACTTGCAACCGATCGCCTTGGCCCG
GTACTCTTTGTTGAAGAGAACAATAACTGCTTTCTCACGAAACGGGGCAG
GACCGCGCGTGTCGGCGGCGTGCAGTTTTCGTCGGAACCCTTCAACTTGG
CCAAGAAGAACAGTTTCAAGAACAGCGGCCTCGCCAACAGCAAGGCCGTG
GACCTGTCCGTGGTGGAAGGCGGGAAATATGGGCCGAAGATTACCATGGC
GACCAAGATGTCTGACGCTTTGGTTTGGGAATGTATCAAG

Synonyms

Publications