EWM24128.1, cds6544 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|585105480|gb|EWM24128.1| (Ribosomal protein L28e [Nannochloropsis gaditana]) HSP 1 Score: 412.92 bits (1060), Expect = 7.876e-146 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0 Query: 1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVSRKEQGRCGGDLALCKGAGGEGALKASELESRSKSAGTSKGRDTFTEGPLDFVFGGGE 205 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVSRKEQGRCGGDLALCKGAGGEGALKASELESRSKSAGTSKGRDTFTEGPLDFVFGGGE Sbjct: 1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVSRKEQGRCGGDLALCKGAGGEGALKASELESRSKSAGTSKGRDTFTEGPLDFVFGGGE 205
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|397587168|gb|EJK53834.1| (hypothetical protein THAOC_26649 [Thalassiosira oceanica]) HSP 1 Score: 112.079 bits (279), Expect = 7.090e-28 Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 0 Query: 2 SDALVWECIKNNNCFLTKR-GRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGR 146 +D+LVWE +KNNN F+ K+ GRT+R G ++FS E NL K+S+K SGLANSK +D+S V K + K KK+ + E LNK F S ++IK YR DL+ ALA+Y+++ R +V KG+ K +PVK GR Sbjct: 5 ADSLVWELVKNNNSFMRKKSGRTSRSGSIRFSVERGNLTNKSSYKYSGLANSKTIDISSVGDN----KAALTLKTKKAATSGKSGKTEIALNKDFRRSEKTIKSQATDNYYRPDLKSAALAKYTVVYRSNRVAKGVKKAVPVKKGR 146
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|299471186|emb|CBN79042.1| (60S ribosomal protein L28, putative [Ectocarpus siliculosus]) HSP 1 Score: 97.8265 bits (242), Expect = 2.087e-22 Identity = 60/147 (40.82%), Postives = 80/147 (54.42%), Query Frame = 0 Query: 1 MSDALVWECIKNNNCFLTKR-GRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGR 146 +S+ LVW ++ N CFL KR G+T R G V ++EP NL NS+K SGLANSKAV + + K P M K K+ KP + L K + ++I T YR DLQ AL R+S + R +V+KG KP+ V GR Sbjct: 4 VSNELVWSLVRRNTCFLYKRNGQTKRSGKVVLTAEPNNLTNVNSYKCSGLANSKAVGIQFAKDAKDRPCAAMTLKSSKNGSKPKKSVGRSLLKKTHPSVSQAIMKQTGGTNYRPDLQHAALVRWSKVHRALRVQKGERKPMTVNAGR 150
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|1210528071|dbj|GAX13186.1| (large subunit ribosomal protein L28e [Fistulifera solaris]) HSP 1 Score: 95.1301 bits (235), Expect = 2.007e-21 Identity = 62/149 (41.61%), Postives = 82/149 (55.03%), Query Frame = 0 Query: 1 MSDALVWECIKNNNCFLTKR-GRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVS 148 + D L WE ++ NNCFL KR G+T R G VQFS EP N N K S +ANSKA+D VV G+ ++ T GK K N +NK F S + I G YR+DL+ LA+Y+ + + + KG+ KP+PVK GR S Sbjct: 4 IPDQLTWEIVRRNNCFLKKRNGQTKRSGSVQFSVEPGNCKSLNQLKYSAIANSKALD--VVFSGENRAQLIKKTAGKSGSKVAVAKIN---VNKDFRRSEKVIVGQGIDNFYRQDLKGAVLAKYTAVYQANRRAKGITKPVPVKKGRKS 147
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|1183482999|gb|ORZ06778.1| (ribosomal protein L28e [Lobosporangium transversale]) HSP 1 Score: 93.9745 bits (232), Expect = 4.167e-21 Identity = 62/127 (48.82%), Postives = 72/127 (56.69%), Query Frame = 0 Query: 1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMAT-KGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLL 126 MS L W IKNNN FL KR GVQFSSE NL KNSFK SGLAN K VD++ G+ + +AT K K S KPA + L K S RS+ G+T + GYR DL+ ALAR S L Sbjct: 1 MSADLTWLLIKNNNSFLVKRN------GVQFSSEAGNLLNKNSFKYSGLANKKTVDITAAPSGR---GVVVATKKAKVSAYKPAKTITKVTLTKGIRKSARSVAGLT-RNGYRADLRQAALARVSAL 117
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|361128062|gb|EHL00015.1| (putative 60S ribosomal protein L28e [Glarea lozoyensis 74030]) HSP 1 Score: 95.9005 bits (237), Expect = 7.201e-21 Identity = 58/138 (42.03%), Postives = 83/138 (60.14%), Query Frame = 0 Query: 1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPL--NKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGL 136 +S L+WE +N N FL KR A+ GGV+FS +PFNL +S K++G N KAV + +G K G +T+ TK KS +KP +L + T L NK+ + ++I T K GYR DL+P A+AR S +++ KK L Sbjct: 8 VSADLIWEVTRNQNAFLVKR---AQSGGVRFSRDPFNLVNIHSRKHAGFVNEKAVGVIEEKGDKKG--VTLITKKVKSTQKPGSLHHTTGLGGNKSTRKTYKTIVSNTAKSGYRSDLRPYAVARASAIRKSQTPKKDL 140
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|1072224572|gb|OEU09322.1| (hypothetical protein FRACYDRAFT_195398 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 93.5893 bits (231), Expect = 8.059e-21 Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 0 Query: 1 MSDALVWECIKNNNCFLTKR-GRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATK-GKKSLKKPATLANETPLNKA-FATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGR 146 ++D+L WE IK+NNCFL K+ G+T R G + FSSE N+ + FK SG+ANSKA D+S + K I A+K G + K AT+ PLNK+ F +IK T YR+DL+ ALA+++ + + + G K P K GR Sbjct: 4 IADSLTWELIKHNNCFLKKKSGKTKRTGTISFSSEKGNIKSLSQFKFSGIANSKAFDISCTDDNKAQLFIKTASKCGTQPKKSSATI----PLNKSDFRKVEATIKNTTSGVFYRRDLESAALAKWTKVYQGNKKANGTKKTRPCKKGR 148
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|1210521061|dbj|GAX20166.1| (large subunit ribosomal protein L28e [Fistulifera solaris]) HSP 1 Score: 93.2041 bits (230), Expect = 1.265e-20 Identity = 61/149 (40.94%), Postives = 81/149 (54.36%), Query Frame = 0 Query: 1 MSDALVWECIKNNNCFLTKR-GRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVS 148 + D L WE ++ NNCFL KR G+T R G VQFS EP N N K S +ANSKA+D VV G+ ++ T K K N +NK F S + I G YR+DL+ LA+Y+ + + + KG+ KP+PVK GR S Sbjct: 4 IPDQLTWEIVRRNNCFLKKRNGQTKRSGSVQFSVEPGNCKSLNQLKYSAIANSKALD--VVFSGENRAQLIKKTASKSGSKVAVAKIN---VNKDFRRSEKVIVGQGIDNYYRQDLKGAVLAKYTAVYQANRRAKGITKPVPVKKGRKS 147
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|1183495389|gb|ORZ19051.1| (ribosomal protein L28e [Absidia repens]) HSP 1 Score: 89.7373 bits (221), Expect = 1.674e-19 Identity = 56/124 (45.16%), Postives = 69/124 (55.65%), Query Frame = 0 Query: 1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYS 124 MS ALVWE IKNNN FL KR G+Q SSE NL K+SFK SG+AN K V ++G G K+T TK S PA N T ++K + +S+ + + YR DL P ALAR S Sbjct: 1 MSSALVWELIKNNNSFLVKRD------GLQLSSEANNLTNKHSFKYSGIANEKTV---AIQGAPRGIKVTKNTKKTSS---PAKSVNSTVISKGRRHTAKSVANLIARNKYRPDLLPAALARAS 112
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|734660616|gb|KHN97670.1| (60S ribosomal protein L28 [Metarhizium album ARSEF 1941]) HSP 1 Score: 90.1225 bits (222), Expect = 1.822e-19 Identity = 53/130 (40.77%), Postives = 75/130 (57.69%), Query Frame = 0 Query: 1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPL--NKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKR 128 MS LVWE ++NNNCFL+K R GGVQFS +P NL KNS K++G N+KAV + E G +T+ +K KPA +T NK+ + +++ +T K GYR DL+ A+ R S ++R Sbjct: 9 MSSDLVWEIVRNNNCFLSKSNRN---GGVQFSHDPLNLTNKNSRKHAGFVNAKAVGIIPNEKG----GVTVISKKTTDATKPAKAFVKTIYGGNKSSRKTYKAVANLTSKSGYRSDLRSAAVERVSAIRR 131 The following BLAST results are available for this feature:
BLAST of EWM24128.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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