EWM24128.1, cds6544 (CDS) Nannochloropsis gaditana

Overview
NameEWM24128.1
Unique Namecds6544
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:799555..799587 -
Alignment locationCM002468.1:798719..798907 -
Alignment locationCM002468.1:798386..798546 -
Alignment locationCM002468.1:798080..798148 -
Alignment locationCM002468.1:797829..797994 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24128.1
ProductRibosomal protein L28e
Orig transcript idgnl|cribi|Naga_101068g1.8436.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:799555..799587 -
CM002468.1supercontigCM002468.1:798719..798907 -
CM002468.1supercontigCM002468.1:798386..798546 -
CM002468.1supercontigCM002468.1:798080..798148 -
CM002468.1supercontigCM002468.1:797829..797994 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR002672Ribosomal_L28e
IPR029004L28e/Mak16
Homology
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|585105480|gb|EWM24128.1| (Ribosomal protein L28e [Nannochloropsis gaditana])

HSP 1 Score: 412.92 bits (1060), Expect = 7.876e-146
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVSRKEQGRCGGDLALCKGAGGEGALKASELESRSKSAGTSKGRDTFTEGPLDFVFGGGE 205
            MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVSRKEQGRCGGDLALCKGAGGEGALKASELESRSKSAGTSKGRDTFTEGPLDFVFGGGE
Sbjct:    1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVSRKEQGRCGGDLALCKGAGGEGALKASELESRSKSAGTSKGRDTFTEGPLDFVFGGGE 205          
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|397587168|gb|EJK53834.1| (hypothetical protein THAOC_26649 [Thalassiosira oceanica])

HSP 1 Score: 112.079 bits (279), Expect = 7.090e-28
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 0
Query:    2 SDALVWECIKNNNCFLTKR-GRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGR 146
            +D+LVWE +KNNN F+ K+ GRT+R G ++FS E  NL  K+S+K SGLANSK +D+S V       K  +  K KK+     +   E  LNK F  S ++IK       YR DL+  ALA+Y+++ R  +V KG+ K +PVK GR
Sbjct:    5 ADSLVWELVKNNNSFMRKKSGRTSRSGSIRFSVERGNLTNKSSYKYSGLANSKTIDISSVGDN----KAALTLKTKKAATSGKSGKTEIALNKDFRRSEKTIKSQATDNYYRPDLKSAALAKYTVVYRSNRVAKGVKKAVPVKKGR 146          
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|299471186|emb|CBN79042.1| (60S ribosomal protein L28, putative [Ectocarpus siliculosus])

HSP 1 Score: 97.8265 bits (242), Expect = 2.087e-22
Identity = 60/147 (40.82%), Postives = 80/147 (54.42%), Query Frame = 0
Query:    1 MSDALVWECIKNNNCFLTKR-GRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGR 146
            +S+ LVW  ++ N CFL KR G+T R G V  ++EP NL   NS+K SGLANSKAV +   +  K  P   M  K  K+  KP      + L K   +  ++I   T    YR DLQ  AL R+S + R  +V+KG  KP+ V  GR
Sbjct:    4 VSNELVWSLVRRNTCFLYKRNGQTKRSGKVVLTAEPNNLTNVNSYKCSGLANSKAVGIQFAKDAKDRPCAAMTLKSSKNGSKPKKSVGRSLLKKTHPSVSQAIMKQTGGTNYRPDLQHAALVRWSKVHRALRVQKGERKPMTVNAGR 150          
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|1210528071|dbj|GAX13186.1| (large subunit ribosomal protein L28e [Fistulifera solaris])

HSP 1 Score: 95.1301 bits (235), Expect = 2.007e-21
Identity = 62/149 (41.61%), Postives = 82/149 (55.03%), Query Frame = 0
Query:    1 MSDALVWECIKNNNCFLTKR-GRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVS 148
            + D L WE ++ NNCFL KR G+T R G VQFS EP N    N  K S +ANSKA+D  VV  G+   ++   T GK   K      N   +NK F  S + I G      YR+DL+   LA+Y+ + +  +  KG+ KP+PVK GR S
Sbjct:    4 IPDQLTWEIVRRNNCFLKKRNGQTKRSGSVQFSVEPGNCKSLNQLKYSAIANSKALD--VVFSGENRAQLIKKTAGKSGSKVAVAKIN---VNKDFRRSEKVIVGQGIDNFYRQDLKGAVLAKYTAVYQANRRAKGITKPVPVKKGRKS 147          
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|1183482999|gb|ORZ06778.1| (ribosomal protein L28e [Lobosporangium transversale])

HSP 1 Score: 93.9745 bits (232), Expect = 4.167e-21
Identity = 62/127 (48.82%), Postives = 72/127 (56.69%), Query Frame = 0
Query:    1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMAT-KGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLL 126
            MS  L W  IKNNN FL KR       GVQFSSE  NL  KNSFK SGLAN K VD++    G+    + +AT K K S  KPA    +  L K    S RS+ G+T + GYR DL+  ALAR S L
Sbjct:    1 MSADLTWLLIKNNNSFLVKRN------GVQFSSEAGNLLNKNSFKYSGLANKKTVDITAAPSGR---GVVVATKKAKVSAYKPAKTITKVTLTKGIRKSARSVAGLT-RNGYRADLRQAALARVSAL 117          
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|361128062|gb|EHL00015.1| (putative 60S ribosomal protein L28e [Glarea lozoyensis 74030])

HSP 1 Score: 95.9005 bits (237), Expect = 7.201e-21
Identity = 58/138 (42.03%), Postives = 83/138 (60.14%), Query Frame = 0
Query:    1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPL--NKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGL 136
            +S  L+WE  +N N FL KR   A+ GGV+FS +PFNL   +S K++G  N KAV +   +G K G  +T+ TK  KS +KP +L + T L  NK+   + ++I   T K GYR DL+P A+AR S +++    KK L
Sbjct:    8 VSADLIWEVTRNQNAFLVKR---AQSGGVRFSRDPFNLVNIHSRKHAGFVNEKAVGVIEEKGDKKG--VTLITKKVKSTQKPGSLHHTTGLGGNKSTRKTYKTIVSNTAKSGYRSDLRPYAVARASAIRKSQTPKKDL 140          
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|1072224572|gb|OEU09322.1| (hypothetical protein FRACYDRAFT_195398 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 93.5893 bits (231), Expect = 8.059e-21
Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 0
Query:    1 MSDALVWECIKNNNCFLTKR-GRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATK-GKKSLKKPATLANETPLNKA-FATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGR 146
            ++D+L WE IK+NNCFL K+ G+T R G + FSSE  N+   + FK SG+ANSKA D+S  +  K    I  A+K G +  K  AT+    PLNK+ F     +IK  T    YR+DL+  ALA+++ + +  +   G  K  P K GR
Sbjct:    4 IADSLTWELIKHNNCFLKKKSGKTKRTGTISFSSEKGNIKSLSQFKFSGIANSKAFDISCTDDNKAQLFIKTASKCGTQPKKSSATI----PLNKSDFRKVEATIKNTTSGVFYRRDLESAALAKWTKVYQGNKKANGTKKTRPCKKGR 148          
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|1210521061|dbj|GAX20166.1| (large subunit ribosomal protein L28e [Fistulifera solaris])

HSP 1 Score: 93.2041 bits (230), Expect = 1.265e-20
Identity = 61/149 (40.94%), Postives = 81/149 (54.36%), Query Frame = 0
Query:    1 MSDALVWECIKNNNCFLTKR-GRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKRYTQVKKGLAKPIPVKMGRVS 148
            + D L WE ++ NNCFL KR G+T R G VQFS EP N    N  K S +ANSKA+D  VV  G+   ++   T  K   K      N   +NK F  S + I G      YR+DL+   LA+Y+ + +  +  KG+ KP+PVK GR S
Sbjct:    4 IPDQLTWEIVRRNNCFLKKRNGQTKRSGSVQFSVEPGNCKSLNQLKYSAIANSKALD--VVFSGENRAQLIKKTASKSGSKVAVAKIN---VNKDFRRSEKVIVGQGIDNYYRQDLKGAVLAKYTAVYQANRRAKGITKPVPVKKGRKS 147          
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|1183495389|gb|ORZ19051.1| (ribosomal protein L28e [Absidia repens])

HSP 1 Score: 89.7373 bits (221), Expect = 1.674e-19
Identity = 56/124 (45.16%), Postives = 69/124 (55.65%), Query Frame = 0
Query:    1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPLNKAFATSVRSIKGVTEKCGYRKDLQPIALARYS 124
            MS ALVWE IKNNN FL KR       G+Q SSE  NL  K+SFK SG+AN K V    ++G   G K+T  TK   S   PA   N T ++K    + +S+  +  +  YR DL P ALAR S
Sbjct:    1 MSSALVWELIKNNNSFLVKRD------GLQLSSEANNLTNKHSFKYSGIANEKTV---AIQGAPRGIKVTKNTKKTSS---PAKSVNSTVISKGRRHTAKSVANLIARNKYRPDLLPAALARAS 112          
BLAST of EWM24128.1 vs. NCBI_GenBank
Match: gi|734660616|gb|KHN97670.1| (60S ribosomal protein L28 [Metarhizium album ARSEF 1941])

HSP 1 Score: 90.1225 bits (222), Expect = 1.822e-19
Identity = 53/130 (40.77%), Postives = 75/130 (57.69%), Query Frame = 0
Query:    1 MSDALVWECIKNNNCFLTKRGRTARVGGVQFSSEPFNLAKKNSFKNSGLANSKAVDLSVVEGGKYGPKITMATKGKKSLKKPATLANETPL--NKAFATSVRSIKGVTEKCGYRKDLQPIALARYSLLKR 128
            MS  LVWE ++NNNCFL+K  R    GGVQFS +P NL  KNS K++G  N+KAV +   E G     +T+ +K      KPA    +T    NK+   + +++  +T K GYR DL+  A+ R S ++R
Sbjct:    9 MSSDLVWEIVRNNNCFLSKSNRN---GGVQFSHDPLNLTNKNSRKHAGFVNAKAVGIIPNEKG----GVTVISKKTTDATKPAKAFVKTIYGGNKSSRKTYKAVANLTSKSGYRSDLRSAAVERVSAIRR 131          
The following BLAST results are available for this feature:
BLAST of EWM24128.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105480|gb|EWM24128.1|7.876e-146100.00Ribosomal protein L28e [Nannochloropsis gaditana][more]
gi|397587168|gb|EJK53834.1|7.090e-2843.84hypothetical protein THAOC_26649 [Thalassiosira oc... [more]
gi|299471186|emb|CBN79042.1|2.087e-2240.8260S ribosomal protein L28, putative [Ectocarpus si... [more]
gi|1210528071|dbj|GAX13186.1|2.007e-2141.61large subunit ribosomal protein L28e [Fistulifera ... [more]
gi|1183482999|gb|ORZ06778.1|4.167e-2148.82ribosomal protein L28e [Lobosporangium transversal... [more]
gi|361128062|gb|EHL00015.1|7.201e-2142.03putative 60S ribosomal protein L28e [Glarea lozoye... [more]
gi|1072224572|gb|OEU09322.1|8.059e-2140.94hypothetical protein FRACYDRAFT_195398 [Fragilario... [more]
gi|1210521061|dbj|GAX20166.1|1.265e-2040.94large subunit ribosomal protein L28e [Fistulifera ... [more]
gi|1183495389|gb|ORZ19051.1|1.674e-1945.16ribosomal protein L28e [Absidia repens][more]
gi|734660616|gb|KHN97670.1|1.822e-1940.7760S ribosomal protein L28 [Metarhizium album ARSEF... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6560rna6560Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications