rna6557, rna6557 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6557
Unique Name	rna6557
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	813
Alignment location	CM002468.1:790722..792827 -

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Properties


Property Name	Value
Product	methyltransferase type 11
Orig transcript id	gnl\|cribi\|Naga_100810g2.8468.mrna
Orig protein id	gnl\|cribi\|Naga_100810g2.8468
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:790722..792827 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100810g2	gene6335	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6557	rna6557-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24131.1	cds6541	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:790722..792827-
coding sequence from alignment at CM002468.1:790722..792827-

mRNA sequence

>rna6557 ID=rna6557|Name=rna6557|organism=Nannochloropsis gaditana|type=mRNA|length=813bp
TCAAAGCAGAAATGCTGAGTGCAAGTACCCAGTCCAAATTTAAGTTGAGC
ATGACATACAAATTCTTACTTTTCAGGAATTAAAAGTACGCCTGTTGTCC
GAAGCCCTGAAATCCATCTCCTCCCGCAAGTCTTTGACCTCCTCACCCCT
TCCCTCCCTCTCCCCCCACTTTTTGACAGGAAGGACGACGTTGCTTTCCA
TGCAAACCCACCATCCTTCCAAACCTTGTAGTTTATGTGGAGAGCCAGCC
TTAATGCGATGCGCAGCTTGTCAGCGTGTCACATACTGCTCCAAGAGGTG
CCAAGCCACACATTGGACGCTAGGACACAAACGTCAATGTCGAGCCTTCC
AGGAAGCCCGAAAGAAGGTAGGGAAGAGGTGGCCAATGGGACGAGGCTGA
CTTCCCAAAAAGCCGAATGTACCGGCCTTGTCGACGCATCTTCCCGCCAT
GCGATAACGCCATATGTTCTGTGCAGTACAATTATGCGGGTTTCAGTATG
GTCATCCTTTCCGCCGCCATTTACTTCCTCCTGTCCGCCTGCTCTCACCC
TTCATCCCCCTTTCATTCCCTCCTCCCCTTCCTCCTTCCCTCTCTCCCTT
CCTCCCTGCCTCCCTCCCTCCCTCCCTTCCCCTCCATCAATGCCGACCTC
CTTCCCGCCATGCTCCTTCTCCCCTCTTCCGTACCTTCCCCCTCCCTTCC
TCCCCCCTGACCGTCCAAGGCCACGGGATTGAGTGAGGAGCAGGCCGGCG
TCCTTCTCCGAGCTTTGGAAGAGGAAGTACAGAGGATGGACATGCACACG
GCGTACCGAGAGG

protein sequence of rna6557

>rna6557-protein ID=rna6557-protein|Name=rna6557|organism=Nannochloropsis gaditana|type=polypeptide|length=294bp
MDSAAPPSSQADGGVPHGHNDVAQIQTKNNMGFDMGIPSYRADTWWSSYD
PQHPELPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALD
SNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDG
VRASFQRFSECLAPGGVLVVLACGHYQKLCSLIPGKIAAIDAATLRDPAG
SHGCVTREEMKPMTEAIRAVLPEELHPAVLKDTTEFQTFSPQHLETVAQA
VGLEVEVAEFCDGRLSNYPVFLYEEKEEDRGREQVLLIARKPGP

mRNA from alignment at CM002468.1:790722..792827-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6557 ID=rna6557|Name=rna6557|organism=Nannochloropsis gaditana|type=mRNA|length=2106bp|location=Sequence derived from alignment at CM002468.1:790722..792827- (Nannochloropsis gaditana)
GGCGGTGCCCTTAAAGACGTATGTCCATGCCCACTCGACGTTATGTCGCG
TCGTGTAGGCATCAGGAGAAAGGCCCGGTGTATGATAGGACTTAGAGACG
ATCGTAGCTTTCTATTCCTCCCCGGCCCAACGACCGAAAAAGTCCTTTTC
TACGCAACTGACATCCCTGACGTCGTGCTGGTTTTTGGGCCATGGCACGC
CATCGGCATTTTACCAAGTGCATTTGGACACCTTGACATGACGCACGACT
TTTCCATCGCACCCAGATGCTTGGAGCTTGAGGGGATGCAGGCGACGTCG
GGAAACGAGCACCCGAGCGAAGACACACTATGCCTGTCTTACGTCCTCTC
TTCCTTCCATTTCCCTTACCTTTCCACCTGCATAAGTCGTCAGGACGCTC
TGCAATTTATTAAATTGGACGAAGGAGGTGAAACACAACGGACATGGACT
CTGCCGCACCACCCTCGTCCCAAGCGGACGGGGGCGTGCCGCACGGGCAT
AACGACGTTGCCCAAATTCAGACCAAAAACAACATGGGCTTCGACATGGG
GATACCCTCCTACCGAGCGGATACCTGGTGGAGCTCGTACGACCCCCAGC
ATCCCGAGGTGAGGGGCACAAGGGGGGAGGGGGAGGAGGATGGGAGGGGC
AGGCACCAGGCCGACGGCTGTGGATGCGAAAATTCAACGGGAAAAATGAG
AGAAGGATTCCTACCTTTGTTTTGTCCCGATCACGTCTATCCACTCCCAT
TCGGCGCTTCTGCCAGTCCCCTCCACGCTGTCTTCCCCTCCCTCCCCCTC
CTCTTCCCTCCCCCAAGACACCATGGTCCTCCCCCTCCTCCCCCGCACCT
TCCCCCTTGACCCTCTTACACCGCCTTTTGCGGCCTCTTCCTCCCCGTTT
CCATCCGTACCCCCCCGCAGCTACCGCTCGTGGACATCGGCTCGGGCTTG
GGCACGAATGTCCTGGCGGCTTTGCGTCACGGCGCAAGGGTCATCGCCGT
CGACATGAGCGACGATCACCTGGCCGAAATCCGAGCCAAGGCCACGGCCC
TCGATTCCAACGCACCGGGCGTAACGGCGGGTGAAACGGCCGAGAAACGG
CTGGAAACCCGTTGGGGACGGTTACCGGACCAGGTGCCGTTGTCCCCCCG
GTCGGTTTCGGGGATTTTGTGCGCCCAAGTCCTCCATTTTTTGAACCCCG
ACGGCGTTCGGGCCTCCTTCCAACGTTTCTCCGAGTGTTTGGCGCCGGGG
GGGGTCCTCGTCGTGTTGGCCTGTGGGCATTATCAAAAATTGTGCTCGCT
GATTCCCGGTAAAATCGCGGCCATTGACGCTGCCACCCTGCGCGACCCCG
CTGGCAGCCACGGGTGTGTGACGCGTGAAGAAATGAAGCCCATGACGGAA
GCGATTCGAGCCGTGTTGCCCGAAGAGTTGCACCCGGCGGTTTTGAAAGA
CACAACGGAATTTCAAACGTTCTCACCGCAGCATTTGGAAACGGTCGCGC
AGGCGGTGGGTCTGGAGGTGGAAGTCGCCGAATTTTGCGACGGACGGTTG
AGCAATTATCCGGTGTTTTTGTACGAAGAGAAAGAGGAGGATCGGGGCCG
AGAACAGGTGCTCTTGATTGCAAGAAAGCCGGGGCCTTGAATTTGACAGG
AGGTTCGGCGTTTCTTCGGCGTTTTCTTGGCGTTGTGGCCCGGTGCAAAG
GTGGGATTTTAGGGGATGATCGGGAAGTAGTGACGGAGAGGCAAGGTCAT
GGGTATGGTCCCCGGGAAAATGAAATAATGAATGATGATTGATTATTTCC
CCGGGAAAATGAAATAATGATTATCGTCTAAAAAGAGGAAAGTGGAATGT
CAGCCAAGCAGAGGCATGAGAGAAGGAGAGGGTGCAGAGAGAAGGAAGGA
CAGATCCGATCGCGCTCGGCCGAACAGATTACCAACGGCTATCAATTTCA
TGTCTGTACACGCACTGCGCTCCCCCCTTCTGCTTTCCTGCCCACGGGGA
TTCCCCCCCCTTCGGCGCCGACCTTAGGGATCAGTGTCACGCTTACAGGG
GGTCACTTTGTTGTTAAATTACATCCCGCTCCCTGCGAGAGCTCCAAGAG
CCTCCT

Coding sequence (CDS) from alignment at CM002468.1:790722..792827-

>rna6557 ID=rna6557|Name=rna6557|organism=Nannochloropsis gaditana|type=CDS|length=1770bp|location=Sequence derived from alignment at CM002468.1:790722..792827- (Nannochloropsis gaditana)
CTACCGCTCGTGGACATCGGCTCGGGCTTGGGCACGAATGTCCTGGCGGC
TTTGCGTCACGGCGCAAGGGTCATCGCCGTCGACATGAGCGACGATCACC
TGGCCGAAATCCGAGCCAAGGCCACGGCCCTCGATTCCAACGCACCGGGC
GTAACGGCGGGTGAAACGGCCGAGAAACGGCTGGAAACCCGTTGGGGACG
GTTACCGGACCAGGTGCCGTTGTCCCCCCGGTCGGTTTCGGGGATTTTGT
GCGCCCAAGTCCTCCATTTTTTGAACCCCGACGGCGTTCGGGCCTCCTTC
CAACGTTTCTCCGAGTGTTTGGCGCCGGGGGGGGTCCTCGTCGTGTTGGC
CTGTGGGCATTATCAAAAATTGTGCTCGCTGATTCCCGGTAAAATCGCGG
CCATTGACGCTGCCACCCTGCGCGACCCCGCTGGCAGCCACGGGTGTGTG
ACGCGTGAAGAAATGAAGCCCATGACGGAAGCGATTCGAGCCGTGTTGCC
CGAAGAGTTGCACCCGGCGGTTTTGAAAGACACAACGGAATTTCAAACGT
TCTCACCGCAGCATTTGGAAACGGTCGCGCAGGCGGTGGGTCTGGAGGTG
GAAGTCGCCGAATTTTGCGACGGACGGTTGAGCAATTATCCGGTGTTTTT
GTACGAAGAGAAAGAGGAGGATCGGGGCCGAGAACAGGTGCTCTTGATTG
CAAGAAAGCCGGGGCCTTGAATGGACTCTGCCGCACCACCCTCGTCCCAA
GCGGACGGGGGCGTGCCGCACGGGCATAACGACGTTGCCCAAATTCAGAC
CAAAAACAACATGGGCTTCGACATGGGGATACCCTCCTACCGAGCGGATA
CCTGGTGGAGCTCGTACGACCCCCAGCATCCCGAGCTACCGCTCGTGGAC
ATCGGCTCGGGCTTGGGCACGAATGTCCTGGCGGCTTTGCGTCACGGCGC
AAGGGTCATCGCCGTCGACATGAGCGACGATCACCTGGCCGAAATCCGAG
CCAAGGCCACGGCCCTCGATTCCAACGCACCGGGCGTAACGGCGGGTGAA
ACGGCCGAGAAACGGCTGGAAACCCGTTGGGGACGGTTACCGGACCAGGT
GCCGTTGTCCCCCCGGTCGGTTTCGGGGATTTTGTGCGCCCAAGTCCTCC
ATTTTTTGAACCCCGACGGCGTTCGGGCCTCCTTCCAACGTTTCTCCGAG
TGTTTGGCGCCGGGGGGGGTCCTCGTCGTGTTGGCCTGTGGGCATTATCA
AAAATTGTGCTCGCTGATTCCCGGTAAAATCGCGGCCATTGACGCTGCCA
CCCTGCGCGACCCCGCTGGCAGCCACGGGTGTGTGACGCGTGAAGAAATG
AAGCCCATGACGGAAGCGATTCGAGCCGTGTTGCCCGAAGAGTTGCACCC
GGCGGTTTTGAAAGACACAACGGAATTTCAAACGTTCTCACCGCAGCATT
TGGAAACGGTCGCGCAGGCGGTGGGTCTGGAGGTGGAAGTCGCCGAATTT
TGCGACGGACGGTTGAGCAATTATCCGGTGTTTTTGTACGAAGAGAAAGA
GGAGGATCGGGGCCGAGAACAGGTGCTCTTGATTGCAAGAAAGCCGGGGC
CTTGAATGGACTCTGCCGCACCACCCTCGTCCCAAGCGGACGGGGGCGTG
CCGCACGGGCATAACGACGTTGCCCAAATTCAGACCAAAAACAACATGGG
CTTCGACATGGGGATACCCTCCTACCGAGCGGATACCTGGTGGAGCTCGT
ACGACCCCCAGCATCCCGAG

Synonyms

Publications