EWM24131.1, cds6541 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24131.1 vs. NCBI_GenBank
Match: gi|585105485|gb|EWM24131.1| (methyltransferase type 11 [Nannochloropsis gaditana]) HSP 1 Score: 606.675 bits (1563), Expect = 0.000e+0 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
Query: 1 MDSAAPPSSQADGGVPHGHNDVAQIQTKNNMGFDMGIPSYRADTWWSSYDPQHPELPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVLACGHYQKLCSLIPGKIAAIDAATLRDPAGSHGCVTREEMKPMTEAIRAVLPEELHPAVLKDTTEFQTFSPQHLETVAQAVGLEVEVAEFCDGRLSNYPVFLYEEKEEDRGREQVLLIARKPGP 294
MDSAAPPSSQADGGVPHGHNDVAQIQTKNNMGFDMGIPSYRADTWWSSYDPQHPELPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVLACGHYQKLCSLIPGKIAAIDAATLRDPAGSHGCVTREEMKPMTEAIRAVLPEELHPAVLKDTTEFQTFSPQHLETVAQAVGLEVEVAEFCDGRLSNYPVFLYEEKEEDRGREQVLLIARKPGP
Sbjct: 1 MDSAAPPSSQADGGVPHGHNDVAQIQTKNNMGFDMGIPSYRADTWWSSYDPQHPELPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVLACGHYQKLCSLIPGKIAAIDAATLRDPAGSHGCVTREEMKPMTEAIRAVLPEELHPAVLKDTTEFQTFSPQHLETVAQAVGLEVEVAEFCDGRLSNYPVFLYEEKEEDRGREQVLLIARKPGP 294
BLAST of EWM24131.1 vs. NCBI_GenBank
Match: gi|522072801|ref|WP_020584010.1| (SAM-dependent methyltransferase [Endozoicomonas elysicola] >gi|658301813|gb|KEI70206.1| hypothetical protein GV64_05115 [Endozoicomonas elysicola]) HSP 1 Score: 98.2117 bits (243), Expect = 1.125e-20 Identity = 80/270 (29.63%), Postives = 116/270 (42.96%), Query Frame = 0
Query: 31 MGFDMGIPSYRADTWWSSYDPQHPELPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVLACGHYQKLCSLIPGKIAAIDAATLRDPAGSHGCVT--REEMKPMTEAIRAVLPEELHPAVL--KDTT----EFQTFSPQHLETVAQAVGLEVEVAEFCDGRLSNYPVFLYEEKEEDRGREQVLLIARKP 292
+GF P D W SS+ + PL+DIG G G N AAL HGA+V+A DM+ L + A +A +LPD +P S GILCA+V HFL + V S L PGG L++ C C + K I +D S ++ R+ + + +A E+ VL D +F F L + + VG +EV E G S++PV+ + + R+QV +IA+KP
Sbjct: 13 VGFTFNTPVIYQDYWLSSW---KGDKPLLDIGCGHGVNTHAALMHGAKVMATDMNKPDLTDWLNDLPVAQQEAVTCSAA------------KLPDNIPFEDNSFCGILCAEVFHFLGNEEVIPSINGLYRILEPGGTLLLTCCS-----CDVDVLKCTGISEQIRKDFKKSPSTISGQRDYLSLLAQAAEDFNCPEITDPVLAAHDINIPGRDFCFFISDQLGELMKNVGFIIEVCE--QGEASHFPVWSHGD------RDQVRIIAKKP 254
BLAST of EWM24131.1 vs. NCBI_GenBank
Match: gi|1178785735|ref|WP_083232777.1| (hypothetical protein [Endozoicomonas atrinae]) HSP 1 Score: 92.0485 bits (227), Expect = 2.226e-18 Identity = 75/270 (27.78%), Postives = 118/270 (43.70%), Query Frame = 0
Query: 31 MGFDMGIPSYRADTWWSSYDPQHPELPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVLACGHYQKLCSLIPGKIAAIDAATLRDPAGSHGCVT--REEMKPMTEAIRAV-LPEELHPAVLKDTT-----EFQTFSPQHLETVAQAVGLEVEVAEFCDGRLSNYPVFLYEEKEEDRGREQVLLIARKP 292
+GF P+ D+W SS+ + P L+D+G G G N +AL GA V+A DM L+E A T +K + R +LP+ +P + GILCA+V HFL+ + V S L PGG L++ C C + K + + S VT R+ + + +A + PE P + +F F+ + L + + G +E E G +YPV+ + +K +QV +IA+KP
Sbjct: 14 VGFTFHNPAVYLDSWLSSWKGKKP---LLDLGCGHGVNTHSALLQGAEVVATDMDKPDLSEWLNDLPA------------TQQKAVTCRAAKLPENIPFEDNAFCGILCAEVFHFLSNEEVIPSINELYRILEPGGTLLLTCCS-----CDVDVLKSTGLSQDVRKAIKASPFTVTCQRDYLSLLAQAAEELNCPEVTAPVLAAHEINIPERDFCFFASEQLGVLIEKAGFIIETCE--QGDAPHYPVWSHGDK------DQVRIIAKKP 255
BLAST of EWM24131.1 vs. NCBI_GenBank
Match: gi|1199001831|ref|WP_087110941.1| (hypothetical protein [Endozoicomonas sp. S-B4-1U] >gi|1182715420|emb|SMA48603.1| hypothetical protein EHSB41UT_02806 [Endozoicomonas sp. S-B4-1U]) HSP 1 Score: 82.4185 bits (202), Expect = 1.003e-14 Identity = 70/257 (27.24%), Postives = 115/257 (44.75%), Query Frame = 0
Query: 43 DTWWSSYDPQHPELPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVLACGHYQKLCSLIPGKIAAIDAATLRDPAGSHGCVTREEMKPMTEAIRAV-LP-EELHPAV-----LKDTTEFQTFSPQHLETVAQAVGLEVEVAEFCDGRLSNYPVFLYEEKEEDRG-REQVLLIARK 291
D W +S+D + P L+DIG G N +AA + GA+V+A +MS +A + + E L + +LPD+VP S+SG+LC++VLHFL D V + L P G +VV CG G + A + ++P H + + M + +R+ LP +++ + L + F F+ L + G +VE G +YP++ D G +Q+ +IA+K
Sbjct: 31 DHWIASWDTKKP---LLDIGCGNCNNAIAAAQQGAKVLAGEMSHQTIASLEQE--------------HGHENNLSFHYVKLPDEVPFMEESISGVLCSEVLHFLTHDEVLGTLSEVHRILKPEGTMVV-CCGSEDAKALQKTGFVEAQEKKREKEPDHLHH--IDDILSLMEKGLRSYKLPADDIQEGIEFYRSLMPHSRFNLFNKHQLAETFEKNGFKVE--HLQSGPAPHYPMW-------DHGDHDQIRIIAKK 258
BLAST of EWM24131.1 vs. NCBI_GenBank
Match: gi|1113240159|gb|OJV06090.1| (hypothetical protein BGO12_24080 [Verrucomicrobia bacterium 61-8]) HSP 1 Score: 77.7962 bits (190), Expect = 3.183e-13 Identity = 71/241 (29.46%), Postives = 103/241 (42.74%), Query Frame = 0
Query: 56 LPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVL----ACGHYQKLCSLIPGKIAAIDAATLRDPAGSHGCVTREEMKPMTEAIRAVLPEELHPAVLKDTTEFQTFSPQHLETVAQAVGLEVEVAE-FCDGRLSNYPVFLYEEKEEDRGREQVLLIARK 291
LPL+DIG+ G L AL++GA V+A+D+S LA ++ A A + ++RL R P +V L S+SG+L QVLHFL+ + A+ + LAPGG L + + +Y+K D +R G T R LP+ +H F L +A G E+E E FC +N+P +K GRE + L A K
Sbjct: 43 LPLLDIGAAYGNATLPALKNGATVVALDLSPTELAILQQSADAEE------------QRRLVVMPVRFPQEVNLLNSSLSGVLGGQVLHFLDGPTLEAALGKIHRWLAPGGRLYAITITPSLSYYRKFW----------DEYQVRKARGDRWPGVFNPKDVATPEWRDRLPDLIH-----------LFDTDILGRAVRAAGFEIETLEYFC---FTNFP-----DKHRTDGREFLTLTAVK 242
BLAST of EWM24131.1 vs. NCBI_GenBank
Match: gi|1174899216|ref|WP_081573795.1| (hypothetical protein [Chromobacterium violaceum] >gi|1173977300|gb|OQS20247.1| hypothetical protein B0T41_21875 [Chromobacterium violaceum]) HSP 1 Score: 77.411 bits (189), Expect = 5.354e-13 Identity = 70/240 (29.17%), Postives = 104/240 (43.33%), Query Frame = 0
Query: 56 LPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVLACGHYQKLCSLIPGKIAAIDAATLRDPAGSH---GCVTREEMKPMTEAIRAVLPEELHPAVLKDTTEFQTFSPQHLETVAQAVGLEVEVAEFCDGRLSNYPVFLYEEKEEDRGREQVLLIARKP 292
PL++IG+G G+N ++AL++G VI D+S +HL EI + N P +R+ G PD++ L+ S++ ILC +VLHF N G+ S L PGG + Y + + G + A H G + M + A +P+ LH L D F+ H G VE A + + R +PV E D GR+ V +IA KP
Sbjct: 44 FPLLEIGAGFGSNSISALKNGHTVICNDLSKEHL-EIAGR------NVPA-----EMLQRITFLDGSFPDEIDLTENSIASILCCRVLHFFNGQGIDKMLNAMSRLLIPGGRI-------YATVETPFIGNWKSFRPEYEARLAAGHPYPGLIENHRMHD-SIAFSNKIPDVLH---LFDLDSFKKLFTDH--------GFMVEQAAYIN-RQGVFPV----ECLSDDGRDSVGVIAVKP 247
BLAST of EWM24131.1 vs. NCBI_GenBank
Match: gi|551575554|ref|XP_005773499.1| (hypothetical protein EMIHUDRAFT_208210 [Emiliania huxleyi CCMP1516] >gi|485625111|gb|EOD21070.1| hypothetical protein EMIHUDRAFT_208210 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 77.0258 bits (188), Expect = 8.009e-13 Identity = 51/149 (34.23%), Postives = 65/149 (43.62%), Query Frame = 0
Query: 24 QIQTKNNMGFDMGIPSYRADTWWSSYDPQHPELPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVLA 172
Q T+N G M S A W +YD HP +VD+G G V A V+A+D ++HL +R L S R+GRLPD + L S S IL A+VLHFLN + L PGG+L V A
Sbjct: 10 QALTQNGCGMQMATASPLAGAWIDAYDGHHP---IVDVGCAYGLAVKEAAARSVPVLAIDCCEEHLEAVRHTCAGLPSFE-------------GARFGRLPDDLSLPAASASSILVAEVLHFLNGPQCDRALAALHATLVPGGLLFVTA 142
BLAST of EWM24131.1 vs. NCBI_GenBank
Match: gi|1125751341|ref|WP_075079011.1| (class I SAM-dependent methyltransferase [Terrimicrobium sacchariphilum] >gi|1012438473|dbj|GAT33254.1| polyketide synthase PksJ [Terrimicrobium sacchariphilum]) HSP 1 Score: 76.2554 bits (186), Expect = 1.214e-12 Identity = 72/241 (29.88%), Postives = 106/241 (43.98%), Query Frame = 0
Query: 57 PLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVL----ACGHYQKLCSLIPGKIAAIDAATLRDPAGSHGCVTREEMKPMTEAIRAVLPEELHPAVLKDTTEFQTFSPQHLETVAQAVGLEVEVAE-FCDGRLSNYPVFLYEEKEEDRGREQVLLIARKP 292
PL+DIG+ G L AL++GA V+AVD+S LA ++ +AG +KRL R P+++ L SV+G+L QVLHFL+ + + R L PGG L + + +Y+K + A D R P G + +E+ + R LP+ +H F L + G E+E E FC N+P +K GRE + L A KP
Sbjct: 44 PLLDIGAAYGNATLPALKNGATVVAVDLSPTELAILQQ------------SAGAEEQKRLVVMPARFPEELSLLDASVAGVLGGQVLHFLDGPRLEEALGRIYRWLIPGGQLFAITITPSLSYYRKYWDEFHARKARGD----RWP----GVLNPKEVA--SPEWRDRLPDMIH-----------LFDKDILGRAVREAGFEIESLEYFC---FENFP-----DKHRTDGREFLSLTAMKP 243
BLAST of EWM24131.1 vs. NCBI_GenBank
Match: gi|1179498781|ref|WP_083338839.1| (hypothetical protein [Chromobacterium sp. 37-2]) HSP 1 Score: 75.8702 bits (185), Expect = 1.727e-12 Identity = 70/241 (29.05%), Postives = 104/241 (43.15%), Query Frame = 0
Query: 56 LPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVLACGHYQKLCSLIPGKIAAIDAATLRDPAGSH---GCVTREEMKPMTEAIRAVLPEELHPAVLKDTTEFQTFSPQHLETVAQAVGLEVEVAEFCDGRLSNYPVFLYEEKEEDRGREQVLLIARKPG 293
PL++IG+G G+N ++AL++G VI D+S +HL EI ++ N P +R+ G PD++ L+ S+S ILC +VLHF N G+ S L P G + Y + + G + A H G + M + A +P+ LH L D F+ H G VE A + + R +PV E D GR+ V +IA KP
Sbjct: 44 FPLLEIGAGFGSNSISALKNGHTVICNDLSKEHL-EIASR------NVPA-----EMLQRITFLDGSFPDEIDLTENSISSILCCRVLHFFNGPGIDKMLNAMSRLLIPNGRI-------YATVETPFIGNWKSFRPEYEARLAAGHPYPGLIENHRMHD-SIAFSNQIPDVLH---LFDLDSFKKLFTDH--------GFMVEQAAYIN-RQGVFPV----ECLSDDGRDSVGVIAIKPA 248
BLAST of EWM24131.1 vs. NCBI_GenBank
Match: gi|1180716698|ref|WP_084201834.1| (hypothetical protein [Chromobacterium piscinae]) HSP 1 Score: 75.485 bits (184), Expect = 2.137e-12 Identity = 69/239 (28.87%), Postives = 105/239 (43.93%), Query Frame = 0
Query: 56 LPLVDIGSGLGTNVLAALRHGARVIAVDMSDDHLAEIRAKATALDSNAPGVTAGETAEKRLETRWGRLPDQVPLSPRSVSGILCAQVLHFLNPDGVRASFQRFSECLAPGGVLVVLACGHYQKLCSLIPGKIAAIDAATLRDPAGSH---GCVTREEMKPMTEAIRAVLPEELHPAVLKDTTEFQTFSPQHLETVAQAVGLEVEVAEFCDGRLSNYPVFLYEEKEEDRGREQVLLIARK 291
PL++IG+G G+N ++AL++G VI D+S +HL EI ++ N P +R+ G+ PD++ L+ S+S ILC +VLHF N GV S+ L P G + Y + + G + A H G + M + A +P+ LH L D F+ H G +E A + + R +PV E D GR+ V +IA K
Sbjct: 44 FPLLEIGAGFGSNSISALKNGHTVICNDLSKEHL-EIASR------NVPA-----EMLQRITFLDGKFPDEIDLTENSISSILCCRVLHFFNGQGVDKMLDAMSKLLIPNGRI-------YATVETPFIGNWKSFRPEYEARLAAGHPYPGLIENHRMHD-SIAFSNQIPDVLH---LFDLDSFKKLFTDH--------GFVIEQASYIN-RQGVFPV----ECLSDDGRDSVGVIAVK 246 The following BLAST results are available for this feature:
BLAST of EWM24131.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|