rna6556, rna6556 (mRNA) Nannochloropsis gaditana

Overview
Namerna6556
Unique Namerna6556
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length459
Alignment locationCM002468.1:787434..788341 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101164g2.9046.mrna
Orig protein idgnl|cribi|Naga_101164g2.9046
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:787434..788341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101164g2gene6333Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6556rna6556-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24134.1cds6540Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6556 ID=rna6556|Name=rna6556|organism=Nannochloropsis gaditana|type=mRNA|length=459bp
ATGGGAGGGAGGAAAAAATGCTTACAGAAGGCCACCCACATGCACACAGA
TACCAGGAGCAACGGCAGCACCCAAAAGCATTCTTCCTCCCTGCCGCCCC
CTCCCTCCATCCCTGTGCTTTCCTTTCCGTATCCTTCAAGGGAGACATTT
CAAGCCCGCTATTTGGAAAAATATCATCCTTGTCTTTTGAGACGAGCGGC
ACAATACTACCTGCCCAAAACCTTGGCATTGTGCGGTAAAGGAGAAGGCG
AACCCACAGGATTTGTTGATTTTCTAAGGGACTCTCTGCCACCAAGCACA
GTTCTAGAGCTGTCGTGTACGCCGAGGGGGAAGCCGTTCTCGGGAGCTGC
TGCCCACGCCCAGACTCTTCCTGTTCCCCTCTCTACCTTCCTCCTCCTCT
TCCGGCACGCCCACCGGCCCACTGCACCGTCTCGTGGCATGGCGCGGGGG
AAAAAGTGA
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protein sequence of rna6556

>rna6556-protein ID=rna6556-protein|Name=rna6556|organism=Nannochloropsis gaditana|type=polypeptide|length=165bp
MWRASLNAMRSLSACHILLQEVPSHTLDARTQTSMSSLPGSPKEGREEVA
NGTRLTSQKAECTGLVDASSRHAITPYVLCSTIMRVSVWSSFPPPFTSSC
PPALTLHPPFIPSSPSSFPLSLPPCLPPSLPSPPSMPTSFPPCSFSPLPY
LPPPFLPPDRPRPRD
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mRNA from alignment at CM002468.1:787434..788341+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6556 ID=rna6556|Name=rna6556|organism=Nannochloropsis gaditana|type=mRNA|length=908bp|location=Sequence derived from alignment at CM002468.1:787434..788341+ (Nannochloropsis gaditana)
TCAAAGCAGAAATGCTGAGTGCAAGTACCCAGTCCAAATTTAAGTTGAGC
ATGACATACAAATTCTTACTTTTCAGGAATTAAAAGTACGCCTGTTGTCC
GAAGCCCTGaaatccatctcctcccgcaagTCTTTgacctcctcacccct
tccctccctctccccccacttTTTGACAGGAAGGACGACGTTGCTTTCCA
TGCAAACCCACCATCCTTCCAAACCTTGTAGTTTATGTGGAGAGCCAGCC
TTAATGCGGTGAGCAAGTCCCTCCTTCATAACTAGTCCtagtcctttcct
ccccctttcattTCTGACCTCCTGCCCTGCTTGGCCCTGTGTGCATTCCT
CAGATGCGCAGCTTGTCAGCGTGTCACATACTGCTCCAAGAGGTGCCAAG
CCACACATTGGACGCTAGGACACAAACGTCAATGTCGAGCCTTCCAGGAA
GCCCGAAAGAAGGtagggaagaggtggccaATGGGACGAGGCTGACTTCC
CAAAAAGCCGAATGTACCGGCCTTGTCGACGCATCTTCCCGCCATGCGAT
AACGCCATATGTTCTGTGCAGTACAATTATGCGGGTTTCAGTATGGTCAT
CCTTTCCGCCGCCATTTacttcctcctgtccgccTGCTCTCACCCTTCAT
CCCCctttcattccctcctccccttcctccttccctctctcccttcctcc
ctgcctccctccctccctcccttcccctccatcaatgccgacctccttcc
cgccatgctccttctcccctcttccgtaccttccccctcccttcctcccc
cctgacCGTCCAAGGCCACGGGATTGAGTGAGGAGCAGGCCGGCGTCCTT
CTCCGAgctttggaagaggaagtacAGAGGATGGACATGCACACGGCGTA
CCgagagg
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Coding sequence (CDS) from alignment at CM002468.1:787434..788341+

>rna6556 ID=rna6556|Name=rna6556|organism=Nannochloropsis gaditana|type=CDS|length=996bp|location=Sequence derived from alignment at CM002468.1:787434..788341+ (Nannochloropsis gaditana)
ATGTGGAGAGCCAGCCTTAATGCGATGCGCAGCTTGTCAGCGTGTCACAT
ACTGCTCCAAGAGGTGCCAAGCCACACATTGGACGCTAGGACACAAACGT
CAATGTCGAGCCTTCCAGGAAGCCCGAAAGAAGGtagggaagaggtggcc
aATGGGACGAGGCTGACTTCCCAAAAAGCCGAATGTACCGGCCTTGTCGA
CGCATCTTCCCGCCATGCGATAACGCCATATGTTCTGTGCAGTACAATTA
TGCGGGTTTCAGTATGGTCATCCTTTCCGCCGCCATTTacttcctcctgt
ccgccTGCTCTCACCCTTCATCCCCctttcattccctcctccccttcctc
cttccctctctcccttcctccctgcctccctccctccctcccttcccctc
catcaatgccgacctccttcccgccatgctccttctcccctcttccgtac
cttccccctcccttcctcccccctgacCGTCCAAGGCCACGGGATTGAAT
GTGGAGAGCCAGCCTTAATGCGATGCGCAGCTTGTCAGCGTGTCACATAC
TGCTCCAAGAGGTGCCAAGCCACACATTGGACGCTAGGACACAAACGTCA
ATGTCGAGCCTTCCAGGAAGCCCGAAAGAAGGtagggaagaggtggccaA
TGGGACGAGGCTGACTTCCCAAAAAGCCGAATGTACCGGCCTTGTCGACG
CATCTTCCCGCCATGCGATAACGCCATATGTTCTGTGCAGTACAATTATG
CGGGTTTCAGTATGGTCATCCTTTCCGCCGCCATTTacttcctcctgtcc
gccTGCTCTCACCCTTCATCCCCctttcattccctcctccccttcctcct
tccctctctcccttcctccctgcctccctccctccctcccttcccctcca
tcaatgccgacctccttcccgccatgctccttctcccctcttccgtacct
tccccctcccttcctcccccctgacCGTCCAAGGCCACGGGATTGA
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Synonyms
Publications