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Properties
| Property Name | Value |
|---|
| Product | geranylgeranyl transferase type-2 subunit beta |
| Orig transcript id | gnl|cribi|Naga_100306g7.2057.mrna |
| Orig protein id | gnl|cribi|Naga_100306g7.2057 |
| Gene | RGTB2 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:781269..782724 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6553 ID=rna6553|Name=rna6553|organism=Nannochloropsis gaditana|type=mRNA|length=960bp
ATGCCACCACACGTTCCATCGTCTCCATTGCAAAATCTAGCCTTTCTTCC
ATCGGGCATGGAGAACGAGGAGGAGGGAGGCAACATTGTCACTACCCTCC
TCACCCCTCCCCCTTTTGGGCCTCCGGCAAATCCGGGGGAGGGCATTCCC
TTGATGATTGCGGAAGGGCTCTACCTTAACACGACGCCGCAAGCGCTGTG
GGAGGCGATGCGGGTTCGAAACACCCTCACCACCATGCCGTTGCTGGATC
CTTTCTTCGAATCTTATACCCAGCTCAAGGTCTACGGTCCCCAAACGGAG
ATCGGACGCCGGTCCACCAAGCGTCTTCTTGTCTACGGAAAGAGGGATTT
CCTGGTCGCGTCTTTTGAAGAAACCTTAAGCGCGGCACCGTCCGCCGTTG
TCCCCACAAGAAAGGGCGTGGGAGCCACGGAGGGAAAAGGGAGGAGACCG
GCCCATACAGCATCACGCAAGGATGGAGGCGGGCAACCTCGGCCCAGCAA
GGCCTTTGTCACTGCCAGCATCTCTCTCCCTTGGAGCACGGCGGGGGATC
TCCCGCCTGACGTTCTTAGGGAGGAGCCAGGATACGTGCGGGCTTCTCAG
GATCTCGTCGGCTATTATGCCGCTTCGGGGGAGATTGAAAATGCAGCGCA
TGCCTTGATCATTATGAGGACGGACTTAAAGGGCAACATTCCGCACTGGG
TATTCAGCAAGAGCGTCGGGACTACCGGGATGCACTTTCTTCAGACCTTG
GAGGCAGTGGCAGGGGCGCCACGGCGCCGCTGGCGATGGGTTGTCAGCAA
AATTAGATGTGTTTTGCTCATGGCAGCGAGGCGTCAAGTCCTCAGCTTTT
GCCTTGGGGCCCAAAATTTGAGTGTGGAGGCCTCCTCCCTCCACCTGTCG
GGGCTTCTTTATGAGGCTACTGGCGAGCTCCGTCTCATACATGGTGACGT
GTGTACATGA back to topprotein sequence of rna6553 >rna6553-protein ID=rna6553-protein|Name=rna6553|organism=Nannochloropsis gaditana|type=polypeptide|length=242bp
MTVGKIESPSTPASEDAEVLGEGDAARGENYPEEKAEKTSTLPKEVFWEE
KHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELS
EIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRV
AGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPRAGEGGREG
GREGGREGQGNRVVLNGQFPRGRKMALALVFLLALTPRLFLL back to topmRNA from alignment at CM002468.1:781269..782724+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6553 ID=rna6553|Name=rna6553|organism=Nannochloropsis gaditana|type=mRNA|length=1456bp|location=Sequence derived from alignment at CM002468.1:781269..782724+ (Nannochloropsis gaditana)
TTAACATAAATCGCCTTCTATCATTTCCCGCATCAactcattccctccct
taccagCCCTATATGACAGTCGGGAAAATTGAATCCCCCTCGACACCTGC
GTCGGAAGATGCAGAGGTacttggggagggggacgctGCAAGGGGAGAGA
ACTATccagaagaaaaagcagagAAGACGTCGACACTGCCGAAGGAGGTG
TTTTGGGAAGAGAAGCACGTTTGCTTTATACGCGGCTTGGTGAAAAAGAC
TGATTCCTTCGAACACGTGGTCATGGAGCACTTGAAGGTATGTTCTGTGC
ACGGAAGAACACCCCTGTATAAATTATTTTATTTGTCCTCTAAATTAACT
ATTTGCagtccatccctccctgtcccccttcctcaccccccctccctcct
tcctctccaccctcacTATcccttgttcctcctcttttccctccttccct
ctgcaGATGTCCGCCGTGTACTGGGCCCTGATGGGGATGGCGTTGATGGG
TCGtaatttggaagaagagatggagTTGAGCGAGATCGTGGAATGGGTTC
TGGAATGCCAGCACCCAAACGGCGGGTAAGACGAGGCTTTCCCCATccac
cctcttttcccttccgcaACAGCGCTCCAATTTGTGGAACCTTTGCCAAT
GTGTGTCTGTCGCTTTCGtgttctctccctctctcttacccttcctcccc
tccgtcccttccttcctccctccctcctcccctccttctttccctccttc
cctccctccctccttccctccctccctccctccctccttccctccctccc
tccctccctccctccctccctccctctttccctccctccctccagcttcG
GCGGCAACCAAGGACATGACCCCCACCTTCTCTACACCTTGTCAGCCGTG
CAGATCCTCGCCATCGCGGATGCACTCGAGAAGATCGATCAGGACCGAGT
GGCGGGCTACGTCCTAGGGTTGCAGCAggtgccgagggagggaggaaagg
agggagggaaggagggaggggaggagcgggacgAATCCGACGATGGACGT
GGTAAATCCATCTTGGGGCTGAGTCCTGACCATGCGTgaggcctccccct
cttcccttgtctCCGCGTGGAAGCGACGGGCTCCAGCCAgtctcccacct
tccctccttcccgccctccctccctcccgcccttcctctttccctccgtc
atGCTAGGCGGATGGCTCCTTCGCTGGGGACGAGTGGGGCGAGATCGATA
CTCGTTTCTCGTACTGCGCGCTGTCCACGCTGGCCATTATGGGCCGACTG
CCTCGAgctggtgagggagggagagagggagggagggagggagggaggga
ggggcagggaaatCGGGTTGTACTGAATGGTCAATTTCCCCGCGGGCGGA
AAATGGCGCTTGCATtggttttcctccttgctctcaccccgcgcctcttc
ctcttg back to topCoding sequence (CDS) from alignment at CM002468.1:781269..782724+ >rna6553 ID=rna6553|Name=rna6553|organism=Nannochloropsis gaditana|type=CDS|length=2904bp|location=Sequence derived from alignment at CM002468.1:781269..782724+ (Nannochloropsis gaditana)
ATGACAGTCGGGAAAATTGAATCCCCCTCGACACCTGCGTCGGAAGATGC
AGAGGTacttggggagggggacgctGCAAGGGGAGAGAACTATccagaag
aaaaagcagagAAGACGTCGACACTGCCGAAGGAGGTGTTTTGGGAAGAG
AAGCACGTTTGCTTTATACGCGGCTTGGTGAAAAAGACTGATTCCTTCGA
ACACGTGGTCATGGAGCACTTGAAGATGTCCGCCGTGTACTGGGCCCTGA
TGGGGATGGCGTTGATGGGTCGtaatttggaagaagagatggagTTGAGC
GAGATCGTGGAATGGGTTCTGGAATGCCAGCACCCAAACGGCGGcttcGG
CGGCAACCAAGGACATGACCCCCACCTTCTCTACACCTTGTCAGCCGTGC
AGATCCTCGCCATCGCGGATGCACTCGAGAAGATCGATCAGGACCGAGTG
GCGGGCTACGTCCTAGGGTTGCAGCAgGCGGATGGCTCCTTCGCTGGGGA
CGAGTGGGGCGAGATCGATACTCGTTTCTCGTACTGCGCGCTGTCCACGC
TGGCCATTATGGGCCGACTGCCTCGAgctggtgagggagggagagaggga
gggagggagggagggagggaggggcagggaaatCGGGTTGTACTGAATGG
TCAATTTCCCCGCGGGCGGAAAATGGCGCTTGCATtggttttcctccttg
ctctcaccccgcgcctcttcctcttgATGACAGTCGGGAAAATTGAATCC
CCCTCGACACCTGCGTCGGAAGATGCAGAGGTacttggggagggggacgc
tGCAAGGGGAGAGAACTATccagaagaaaaagcagagAAGACGTCGACAC
TGCCGAAGGAGGTGTTTTGGGAAGAGAAGCACGTTTGCTTTATACGCGGC
TTGGTGAAAAAGACTGATTCCTTCGAACACGTGGTCATGGAGCACTTGAA
GATGTCCGCCGTGTACTGGGCCCTGATGGGGATGGCGTTGATGGGTCGta
atttggaagaagagatggagTTGAGCGAGATCGTGGAATGGGTTCTGGAA
TGCCAGCACCCAAACGGCGGcttcGGCGGCAACCAAGGACATGACCCCCA
CCTTCTCTACACCTTGTCAGCCGTGCAGATCCTCGCCATCGCGGATGCAC
TCGAGAAGATCGATCAGGACCGAGTGGCGGGCTACGTCCTAGGGTTGCAG
CAgGCGGATGGCTCCTTCGCTGGGGACGAGTGGGGCGAGATCGATACTCG
TTTCTCGTACTGCGCGCTGTCCACGCTGGCCATTATGGGCCGACTGCCTC
GAgctggtgagggagggagagagggagggagggagggagggagggagggg
cagggaaatCGGGTTGTACTGAATGGTCAATTTCCCCGCGGGCGGAAAAT
GGCGCTTGCATtggttttcctccttgctctcaccccgcgcctcttcctct
tgATGACAGTCGGGAAAATTGAATCCCCCTCGACACCTGCGTCGGAAGAT
GCAGAGGTacttggggagggggacgctGCAAGGGGAGAGAACTATccaga
agaaaaagcagagAAGACGTCGACACTGCCGAAGGAGGTGTTTTGGGAAG
AGAAGCACGTTTGCTTTATACGCGGCTTGGTGAAAAAGACTGATTCCTTC
GAACACGTGGTCATGGAGCACTTGAAGATGTCCGCCGTGTACTGGGCCCT
GATGGGGATGGCGTTGATGGGTCGtaatttggaagaagagatggagTTGA
GCGAGATCGTGGAATGGGTTCTGGAATGCCAGCACCCAAACGGCGGcttc
GGCGGCAACCAAGGACATGACCCCCACCTTCTCTACACCTTGTCAGCCGT
GCAGATCCTCGCCATCGCGGATGCACTCGAGAAGATCGATCAGGACCGAG
TGGCGGGCTACGTCCTAGGGTTGCAGCAgGCGGATGGCTCCTTCGCTGGG
GACGAGTGGGGCGAGATCGATACTCGTTTCTCGTACTGCGCGCTGTCCAC
GCTGGCCATTATGGGCCGACTGCCTCGAgctggtgagggagggagagagg
gagggagggagggagggagggaggggcagggaaatCGGGTTGTACTGAAT
GGTCAATTTCCCCGCGGGCGGAAAATGGCGCTTGCATtggttttcctcct
tgctctcaccccgcgcctcttcctcttgATGACAGTCGGGAAAATTGAAT
CCCCCTCGACACCTGCGTCGGAAGATGCAGAGGTacttggggagggggac
gctGCAAGGGGAGAGAACTATccagaagaaaaagcagagAAGACGTCGAC
ACTGCCGAAGGAGGTGTTTTGGGAAGAGAAGCACGTTTGCTTTATACGCG
GCTTGGTGAAAAAGACTGATTCCTTCGAACACGTGGTCATGGAGCACTTG
AAGATGTCCGCCGTGTACTGGGCCCTGATGGGGATGGCGTTGATGGGTCG
taatttggaagaagagatggagTTGAGCGAGATCGTGGAATGGGTTCTGG
AATGCCAGCACCCAAACGGCGGcttcGGCGGCAACCAAGGACATGACCCC
CACCTTCTCTACACCTTGTCAGCCGTGCAGATCCTCGCCATCGCGGATGC
ACTCGAGAAGATCGATCAGGACCGAGTGGCGGGCTACGTCCTAGGGTTGC
AGCAgGCGGATGGCTCCTTCGCTGGGGACGAGTGGGGCGAGATCGATACT
CGTTTCTCGTACTGCGCGCTGTCCACGCTGGCCATTATGGGCCGACTGCC
TCGAgctggtgagggagggagagagggagggagggagggagggagggagg
ggcagggaaatCGGGTTGTACTGAATGGTCAATTTCCCCGCGGGCGGAAA
ATGGCGCTTGCATtggttttcctccttgctctcaccccgcgcctcttcct
cttg back to top
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