EWM24136.1, cds6537 (CDS) Nannochloropsis gaditana

Overview
NameEWM24136.1
Unique Namecds6537
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:781331..781555 +
Alignment locationCM002468.1:781725..781843 +
Alignment locationCM002468.1:782114..782246 +
Alignment locationCM002468.1:782476..782724 +

Link to JBrowse

Properties
Property NameValue
End range.
End range782724
Protein idEWM24136.1
Productgeranylgeranyl transferase type-2 subunit beta
Partialtrue
Orig transcript idgnl|cribi|Naga_100306g7.2057.mrna
GeneRGTB2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:781331..781555 +
CM002468.1supercontigCM002468.1:781725..781843 +
CM002468.1supercontigCM002468.1:782114..782246 +
CM002468.1supercontigCM002468.1:782476..782724 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004663Rab geranylgeranyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0018344protein geranylgeranylation
Vocabulary: INTERPRO
TermDefinition
IPR026873Ptb1
IPR008930Terpenoid_cyclase/PrenylTrfase
Homology
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|585105495|gb|EWM24136.1| (geranylgeranyl transferase type-2 subunit beta, partial [Nannochloropsis gaditana])

HSP 1 Score: 494.967 bits (1273), Expect = 4.569e-177
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
Query:    1 MTVGKIESPSTPASEDAEVLGEGDAARGENYPEEKAEKTSTLPKEVFWEEKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPRAGEGGREGGREGGREGQGNRVVLNGQFPRGRKMALALVFLLALTPRLFLL 242
            MTVGKIESPSTPASEDAEVLGEGDAARGENYPEEKAEKTSTLPKEVFWEEKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPRAGEGGREGGREGGREGQGNRVVLNGQFPRGRKMALALVFLLALTPRLFLL
Sbjct:    1 MTVGKIESPSTPASEDAEVLGEGDAARGENYPEEKAEKTSTLPKEVFWEEKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPRAGEGGREGGREGGREGQGNRVVLNGQFPRGRKMALALVFLLALTPRLFLL 242          
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|299469868|emb|CBN76722.1| (putative Rab geranylgeranyl transferase type II beta subunit [Ectocarpus siliculosus])

HSP 1 Score: 182.956 bits (463), Expect = 1.173e-52
Identity = 95/169 (56.21%), Postives = 128/169 (75.74%), Query Frame = 0
Query:   24 DAARGENYPE--EKAEKTSTLPKEVFWEEKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRL 190
            D +   N P+  E AE  S      F+EE H  ++  + ++TD+FE  + EHL+MS VYW LMGMALMGR+L +EM   ++  WV+ CQH  GGFGGN+GHDPH+LYTLSA+Q++A+   L+++D+D+VAGYV GLQQ+DGSF GDEWGE+DTRFSYCALS++AI+G+L
Sbjct:    3 DFSSKSNPPQGTEHAEPPS------FFEELHRQYVIRISEQTDTFEFCMTEHLRMSGVYWGLMGMALMGRDLRKEMGAEDLASWVMRCQHEGGGFGGNEGHDPHILYTLSALQVMALLGELDRVDKDKVAGYVSGLQQSDGSFFGDEWGEVDTRFSYCALSSMAILGQL 165          
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|116787766|gb|ABK24633.1| (unknown [Picea sitchensis])

HSP 1 Score: 181.03 bits (458), Expect = 2.654e-52
Identity = 86/147 (58.50%), Postives = 108/147 (73.47%), Query Frame = 0
Query:   50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPRAGEG 196
            EKH  FI  + KK D F+ +VMEHL+MS  YW L  + LMG+   + ++  E+V WVL+CQH  GGF GN GHDPH+LYTLSAVQILA+ D L+ ID D+++ Y+ GLQQ DGSFAGDEWGEIDTRFSYCA+  L+I+ RL +   G
Sbjct:    7 EKHTQFITSIEKKKD-FDSMVMEHLRMSGAYWGLTALDLMGK--LDAVDREEVVSWVLQCQHDRGGFSGNIGHDPHILYTLSAVQILALLDKLDAIDADKISAYIEGLQQEDGSFAGDEWGEIDTRFSYCAVCCLSILRRLDKIDVG 150          
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|629099107|gb|KCW64872.1| (hypothetical protein EUGRSUZ_G02437 [Eucalyptus grandis])

HSP 1 Score: 176.407 bits (446), Expect = 2.975e-52
Identity = 79/141 (56.03%), Postives = 106/141 (75.18%), Query Frame = 0
Query:   50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRL 190
            +KHV +I  + KK DSFE VVMEHL+++  YW L  + L+G+   + ++  E+V W+L+CQH +GGFGGN GHDPHLLYTLSAVQ+LA+ D L+ +D ++V  Y+  LQ  DGSF+GD WGE+DTRFSYCA+  LAI+ RL
Sbjct:    7 DKHVKYILSVEKKKDSFESVVMEHLRLNGAYWGLTTLDLLGK--LDTVDSDEVVSWILQCQHESGGFGGNIGHDPHLLYTLSAVQVLALFDKLDVLDINKVTDYIRALQNEDGSFSGDIWGEVDTRFSYCAICCLAILKRL 145          
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|1191723409|ref|XP_020973327.1| (geranylgeranyl transferase type-2 subunit beta 1 isoform X3 [Arachis ipaensis] >gi|1193755683|ref|XP_020995197.1| geranylgeranyl transferase type-2 subunit beta 1 isoform X3 [Arachis duranensis])

HSP 1 Score: 177.178 bits (448), Expect = 7.142e-52
Identity = 78/143 (54.55%), Postives = 108/143 (75.52%), Query Frame = 0
Query:   50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPR 192
            +KHV +I  + K+ D FE VVMEHL+M+  YW L  + LMG+   + ++++E+V WV+ CQH +GGFGGN GHDPH+LYTLSAVQ+LA+ D ++ ID D+V  Y++GLQ  DGSF+GD WGE+DTRFSY A+  L+I+ RL +
Sbjct:    7 DKHVKYILSVEKRKDDFESVVMEHLRMNGAYWGLTALDLMGK--LDVVDVNEVVSWVMSCQHDSGGFGGNVGHDPHILYTLSAVQVLALFDKMDLIDADKVTNYIVGLQNEDGSFSGDMWGEVDTRFSYIAICCLSIIHRLDK 147          
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|922408195|ref|XP_013470202.1| (RAB geranylgeranyl transferase beta subunit 2 [Medicago truncatula] >gi|657405799|gb|KEH44240.1| RAB geranylgeranyl transferase beta subunit 2 [Medicago truncatula])

HSP 1 Score: 177.178 bits (448), Expect = 1.946e-51
Identity = 79/143 (55.24%), Postives = 107/143 (74.83%), Query Frame = 0
Query:   50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPR 192
            EKHV +I  + KK DSFE VVMEHL+M+  YW L  + L+G+   + +++ E+V W++ CQH  GGFGGN GHDPH+LYTLSAVQ+LA+ + L+ ID D+V  Y++GLQ  DGSF+GD WGE+DTRFSY A+  L+++ RL R
Sbjct:    7 EKHVQYILSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGK--LDTVDVHEVVSWIMSCQHDEGGFGGNVGHDPHILYTLSAVQVLALFNKLDVIDADKVTNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSLLHRLDR 147          
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|1191723406|ref|XP_020973326.1| (geranylgeranyl transferase type-2 subunit beta 1 isoform X2 [Arachis ipaensis] >gi|1193755680|ref|XP_020995196.1| geranylgeranyl transferase type-2 subunit beta 1 isoform X2 [Arachis duranensis])

HSP 1 Score: 177.563 bits (449), Expect = 2.324e-51
Identity = 78/143 (54.55%), Postives = 108/143 (75.52%), Query Frame = 0
Query:   50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPR 192
            +KHV +I  + K+ D FE VVMEHL+M+  YW L  + LMG+   + ++++E+V WV+ CQH +GGFGGN GHDPH+LYTLSAVQ+LA+ D ++ ID D+V  Y++GLQ  DGSF+GD WGE+DTRFSY A+  L+I+ RL +
Sbjct:    7 DKHVKYILSVEKRKDDFESVVMEHLRMNGAYWGLTALDLMGK--LDVVDVNEVVSWVMSCQHDSGGFGGNVGHDPHILYTLSAVQVLALFDKMDLIDADKVTNYIVGLQNEDGSFSGDMWGEVDTRFSYIAICCLSIIHRLDK 147          
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|922408191|ref|XP_013470201.1| (RAB geranylgeranyl transferase beta subunit 2 [Medicago truncatula] >gi|657405798|gb|KEH44239.1| RAB geranylgeranyl transferase beta subunit 2 [Medicago truncatula])

HSP 1 Score: 176.407 bits (446), Expect = 2.902e-51
Identity = 79/143 (55.24%), Postives = 107/143 (74.83%), Query Frame = 0
Query:   50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPR 192
            EKHV +I  + KK DSFE VVMEHL+M+  YW L  + L+G+   + +++ E+V W++ CQH  GGFGGN GHDPH+LYTLSAVQ+LA+ + L+ ID D+V  Y++GLQ  DGSF+GD WGE+DTRFSY A+  L+++ RL R
Sbjct:    7 EKHVQYILSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGK--LDTVDVHEVVSWIMSCQHDEGGFGGNVGHDPHILYTLSAVQVLALFNKLDVIDADKVTNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSLLHRLDR 147          
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|780073607|ref|XP_011671880.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta isoform X3 [Strongylocentrotus purpuratus])

HSP 1 Score: 177.563 bits (449), Expect = 3.004e-51
Identity = 84/159 (52.83%), Postives = 112/159 (70.44%), Query Frame = 0
Query:   32 PEEKAEKTSTLPKEVFWEEKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRL 190
            P +      T PKEVF+  KHV +I     K D +E+V+ E+L+MS +YW +  M L+G+     M   +I+E+ + CQH  GGFG + GHDPHLLYTLSA+QILAI DAL+ ID D+V  YV GLQQ DGSF GD+WGE+DTRFS+CA++TL+++ RL
Sbjct:    4 PIKDVTLKPTAPKEVFFY-KHVTYITSYSSKKDDYEYVMTEYLRMSGMYWGIAAMDLLGQ--LNRMNKQKIIEFTVSCQHECGGFGASIGHDPHLLYTLSAIQILAIYDALDSIDVDKVVEYVTGLQQEDGSFVGDKWGEVDTRFSFCAVATLSLLKRL 159          
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|629099106|gb|KCW64871.1| (hypothetical protein EUGRSUZ_G02437 [Eucalyptus grandis])

HSP 1 Score: 175.637 bits (444), Expect = 3.195e-51
Identity = 79/141 (56.03%), Postives = 106/141 (75.18%), Query Frame = 0
Query:   50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRL 190
            +KHV +I  + KK DSFE VVMEHL+++  YW L  + L+G+   + ++  E+V W+L+CQH +GGFGGN GHDPHLLYTLSAVQ+LA+ D L+ +D ++V  Y+  LQ  DGSF+GD WGE+DTRFSYCA+  LAI+ RL
Sbjct:    7 DKHVKYILSVEKKKDSFESVVMEHLRLNGAYWGLTTLDLLGK--LDTVDSDEVVSWILQCQHESGGFGGNIGHDPHLLYTLSAVQVLALFDKLDVLDINKVTDYIRALQNEDGSFSGDIWGEVDTRFSYCAICCLAILKRL 145          
The following BLAST results are available for this feature:
BLAST of EWM24136.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105495|gb|EWM24136.1|4.569e-177100.00geranylgeranyl transferase type-2 subunit beta, pa... [more]
gi|299469868|emb|CBN76722.1|1.173e-5256.21putative Rab geranylgeranyl transferase type II be... [more]
gi|116787766|gb|ABK24633.1|2.654e-5258.50unknown [Picea sitchensis][more]
gi|629099107|gb|KCW64872.1|2.975e-5256.03hypothetical protein EUGRSUZ_G02437 [Eucalyptus gr... [more]
gi|1191723409|ref|XP_020973327.1|7.142e-5254.55geranylgeranyl transferase type-2 subunit beta 1 i... [more]
gi|922408195|ref|XP_013470202.1|1.946e-5155.24RAB geranylgeranyl transferase beta subunit 2 [Med... [more]
gi|1191723406|ref|XP_020973326.1|2.324e-5154.55geranylgeranyl transferase type-2 subunit beta 1 i... [more]
gi|922408191|ref|XP_013470201.1|2.902e-5155.24RAB geranylgeranyl transferase beta subunit 2 [Med... [more]
gi|780073607|ref|XP_011671880.1|3.004e-5152.83PREDICTED: geranylgeranyl transferase type-2 subun... [more]
gi|629099106|gb|KCW64871.1|3.195e-5156.03hypothetical protein EUGRSUZ_G02437 [Eucalyptus gr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6553rna6553Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications