EWM24136.1, cds6537 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|585105495|gb|EWM24136.1| (geranylgeranyl transferase type-2 subunit beta, partial [Nannochloropsis gaditana]) HSP 1 Score: 494.967 bits (1273), Expect = 4.569e-177 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0 Query: 1 MTVGKIESPSTPASEDAEVLGEGDAARGENYPEEKAEKTSTLPKEVFWEEKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPRAGEGGREGGREGGREGQGNRVVLNGQFPRGRKMALALVFLLALTPRLFLL 242 MTVGKIESPSTPASEDAEVLGEGDAARGENYPEEKAEKTSTLPKEVFWEEKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPRAGEGGREGGREGGREGQGNRVVLNGQFPRGRKMALALVFLLALTPRLFLL Sbjct: 1 MTVGKIESPSTPASEDAEVLGEGDAARGENYPEEKAEKTSTLPKEVFWEEKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPRAGEGGREGGREGGREGQGNRVVLNGQFPRGRKMALALVFLLALTPRLFLL 242
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|299469868|emb|CBN76722.1| (putative Rab geranylgeranyl transferase type II beta subunit [Ectocarpus siliculosus]) HSP 1 Score: 182.956 bits (463), Expect = 1.173e-52 Identity = 95/169 (56.21%), Postives = 128/169 (75.74%), Query Frame = 0 Query: 24 DAARGENYPE--EKAEKTSTLPKEVFWEEKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRL 190 D + N P+ E AE S F+EE H ++ + ++TD+FE + EHL+MS VYW LMGMALMGR+L +EM ++ WV+ CQH GGFGGN+GHDPH+LYTLSA+Q++A+ L+++D+D+VAGYV GLQQ+DGSF GDEWGE+DTRFSYCALS++AI+G+L Sbjct: 3 DFSSKSNPPQGTEHAEPPS------FFEELHRQYVIRISEQTDTFEFCMTEHLRMSGVYWGLMGMALMGRDLRKEMGAEDLASWVMRCQHEGGGFGGNEGHDPHILYTLSALQVMALLGELDRVDKDKVAGYVSGLQQSDGSFFGDEWGEVDTRFSYCALSSMAILGQL 165
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|116787766|gb|ABK24633.1| (unknown [Picea sitchensis]) HSP 1 Score: 181.03 bits (458), Expect = 2.654e-52 Identity = 86/147 (58.50%), Postives = 108/147 (73.47%), Query Frame = 0 Query: 50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPRAGEG 196 EKH FI + KK D F+ +VMEHL+MS YW L + LMG+ + ++ E+V WVL+CQH GGF GN GHDPH+LYTLSAVQILA+ D L+ ID D+++ Y+ GLQQ DGSFAGDEWGEIDTRFSYCA+ L+I+ RL + G Sbjct: 7 EKHTQFITSIEKKKD-FDSMVMEHLRMSGAYWGLTALDLMGK--LDAVDREEVVSWVLQCQHDRGGFSGNIGHDPHILYTLSAVQILALLDKLDAIDADKISAYIEGLQQEDGSFAGDEWGEIDTRFSYCAVCCLSILRRLDKIDVG 150
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|629099107|gb|KCW64872.1| (hypothetical protein EUGRSUZ_G02437 [Eucalyptus grandis]) HSP 1 Score: 176.407 bits (446), Expect = 2.975e-52 Identity = 79/141 (56.03%), Postives = 106/141 (75.18%), Query Frame = 0 Query: 50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRL 190 +KHV +I + KK DSFE VVMEHL+++ YW L + L+G+ + ++ E+V W+L+CQH +GGFGGN GHDPHLLYTLSAVQ+LA+ D L+ +D ++V Y+ LQ DGSF+GD WGE+DTRFSYCA+ LAI+ RL Sbjct: 7 DKHVKYILSVEKKKDSFESVVMEHLRLNGAYWGLTTLDLLGK--LDTVDSDEVVSWILQCQHESGGFGGNIGHDPHLLYTLSAVQVLALFDKLDVLDINKVTDYIRALQNEDGSFSGDIWGEVDTRFSYCAICCLAILKRL 145
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|1191723409|ref|XP_020973327.1| (geranylgeranyl transferase type-2 subunit beta 1 isoform X3 [Arachis ipaensis] >gi|1193755683|ref|XP_020995197.1| geranylgeranyl transferase type-2 subunit beta 1 isoform X3 [Arachis duranensis]) HSP 1 Score: 177.178 bits (448), Expect = 7.142e-52 Identity = 78/143 (54.55%), Postives = 108/143 (75.52%), Query Frame = 0 Query: 50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPR 192 +KHV +I + K+ D FE VVMEHL+M+ YW L + LMG+ + ++++E+V WV+ CQH +GGFGGN GHDPH+LYTLSAVQ+LA+ D ++ ID D+V Y++GLQ DGSF+GD WGE+DTRFSY A+ L+I+ RL + Sbjct: 7 DKHVKYILSVEKRKDDFESVVMEHLRMNGAYWGLTALDLMGK--LDVVDVNEVVSWVMSCQHDSGGFGGNVGHDPHILYTLSAVQVLALFDKMDLIDADKVTNYIVGLQNEDGSFSGDMWGEVDTRFSYIAICCLSIIHRLDK 147
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|922408195|ref|XP_013470202.1| (RAB geranylgeranyl transferase beta subunit 2 [Medicago truncatula] >gi|657405799|gb|KEH44240.1| RAB geranylgeranyl transferase beta subunit 2 [Medicago truncatula]) HSP 1 Score: 177.178 bits (448), Expect = 1.946e-51 Identity = 79/143 (55.24%), Postives = 107/143 (74.83%), Query Frame = 0 Query: 50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPR 192 EKHV +I + KK DSFE VVMEHL+M+ YW L + L+G+ + +++ E+V W++ CQH GGFGGN GHDPH+LYTLSAVQ+LA+ + L+ ID D+V Y++GLQ DGSF+GD WGE+DTRFSY A+ L+++ RL R Sbjct: 7 EKHVQYILSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGK--LDTVDVHEVVSWIMSCQHDEGGFGGNVGHDPHILYTLSAVQVLALFNKLDVIDADKVTNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSLLHRLDR 147
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|1191723406|ref|XP_020973326.1| (geranylgeranyl transferase type-2 subunit beta 1 isoform X2 [Arachis ipaensis] >gi|1193755680|ref|XP_020995196.1| geranylgeranyl transferase type-2 subunit beta 1 isoform X2 [Arachis duranensis]) HSP 1 Score: 177.563 bits (449), Expect = 2.324e-51 Identity = 78/143 (54.55%), Postives = 108/143 (75.52%), Query Frame = 0 Query: 50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPR 192 +KHV +I + K+ D FE VVMEHL+M+ YW L + LMG+ + ++++E+V WV+ CQH +GGFGGN GHDPH+LYTLSAVQ+LA+ D ++ ID D+V Y++GLQ DGSF+GD WGE+DTRFSY A+ L+I+ RL + Sbjct: 7 DKHVKYILSVEKRKDDFESVVMEHLRMNGAYWGLTALDLMGK--LDVVDVNEVVSWVMSCQHDSGGFGGNVGHDPHILYTLSAVQVLALFDKMDLIDADKVTNYIVGLQNEDGSFSGDMWGEVDTRFSYIAICCLSIIHRLDK 147
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|922408191|ref|XP_013470201.1| (RAB geranylgeranyl transferase beta subunit 2 [Medicago truncatula] >gi|657405798|gb|KEH44239.1| RAB geranylgeranyl transferase beta subunit 2 [Medicago truncatula]) HSP 1 Score: 176.407 bits (446), Expect = 2.902e-51 Identity = 79/143 (55.24%), Postives = 107/143 (74.83%), Query Frame = 0 Query: 50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRLPR 192 EKHV +I + KK DSFE VVMEHL+M+ YW L + L+G+ + +++ E+V W++ CQH GGFGGN GHDPH+LYTLSAVQ+LA+ + L+ ID D+V Y++GLQ DGSF+GD WGE+DTRFSY A+ L+++ RL R Sbjct: 7 EKHVQYILSVQKKKDSFESVVMEHLRMNGAYWGLTTLHLLGK--LDTVDVHEVVSWIMSCQHDEGGFGGNVGHDPHILYTLSAVQVLALFNKLDVIDADKVTNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSLLHRLDR 147
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|780073607|ref|XP_011671880.1| (PREDICTED: geranylgeranyl transferase type-2 subunit beta isoform X3 [Strongylocentrotus purpuratus]) HSP 1 Score: 177.563 bits (449), Expect = 3.004e-51 Identity = 84/159 (52.83%), Postives = 112/159 (70.44%), Query Frame = 0 Query: 32 PEEKAEKTSTLPKEVFWEEKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRL 190 P + T PKEVF+ KHV +I K D +E+V+ E+L+MS +YW + M L+G+ M +I+E+ + CQH GGFG + GHDPHLLYTLSA+QILAI DAL+ ID D+V YV GLQQ DGSF GD+WGE+DTRFS+CA++TL+++ RL Sbjct: 4 PIKDVTLKPTAPKEVFFY-KHVTYITSYSSKKDDYEYVMTEYLRMSGMYWGIAAMDLLGQ--LNRMNKQKIIEFTVSCQHECGGFGASIGHDPHLLYTLSAIQILAIYDALDSIDVDKVVEYVTGLQQEDGSFVGDKWGEVDTRFSFCAVATLSLLKRL 159
BLAST of EWM24136.1 vs. NCBI_GenBank
Match: gi|629099106|gb|KCW64871.1| (hypothetical protein EUGRSUZ_G02437 [Eucalyptus grandis]) HSP 1 Score: 175.637 bits (444), Expect = 3.195e-51 Identity = 79/141 (56.03%), Postives = 106/141 (75.18%), Query Frame = 0 Query: 50 EKHVCFIRGLVKKTDSFEHVVMEHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGGFGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRVAGYVLGLQQADGSFAGDEWGEIDTRFSYCALSTLAIMGRL 190 +KHV +I + KK DSFE VVMEHL+++ YW L + L+G+ + ++ E+V W+L+CQH +GGFGGN GHDPHLLYTLSAVQ+LA+ D L+ +D ++V Y+ LQ DGSF+GD WGE+DTRFSYCA+ LAI+ RL Sbjct: 7 DKHVKYILSVEKKKDSFESVVMEHLRLNGAYWGLTTLDLLGK--LDTVDSDEVVSWILQCQHESGGFGGNIGHDPHLLYTLSAVQVLALFDKLDVLDINKVTDYIRALQNEDGSFSGDIWGEVDTRFSYCAICCLAILKRL 145 The following BLAST results are available for this feature:
BLAST of EWM24136.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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