rna6548, rna6548 (mRNA) Nannochloropsis gaditana

Overview
Namerna6548
Unique Namerna6548
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1150
Alignment locationCM002468.1:769866..771199 +

Link to JBrowse

Properties
Property NameValue
ProductPhotosystem II PsbP, oxygen evolving complex
Orig transcript idgnl|cribi|Naga_100306g3.2059.mrna
Orig protein idgnl|cribi|Naga_100306g3.2059
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:769866..771199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100306g3gene6326Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6548rna6548-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24138.1cds6532Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6548 ID=rna6548|Name=rna6548|organism=Nannochloropsis gaditana|type=mRNA|length=1150bp
TGGACATGTAATGCGGTACCTGCAAAGAATACGCAGCCTTTTGATTAAAA
ATCTCGATTGAATAAGGCGATTGTTTTTGGGGCCTCCTACAGTTGTTAGA
GATGCGTACTTTCGATTTCATCCCCATCGTTGGTGCTACAACGAAATAAT
CACGGAAGGCCTTGAAGGCGCCGCGGGGGTGTGTCGTGTTCCATTTAGCG
CCTCAGTAATGATTGCGTACGCCCCGAACCTTCTGGGCATTCCCACGACA
GCGACCTCGCTGTGGATGCAGATAGGTAAGCGCGCTGATACAAGACCCTG
TGCGCGTAAGGACGAAGCAAAGGCCCTTTGGACACGCTTCCTCTTAGGTT
TCGGTTGCCTTCGTCCCCATGGCGTCCCATTTTTTGGCCACCGTCAGCCA
CAGTGAATCATCCCTCACGCTTTGTGCCCTATTGCTCCTCACAATTATCT
GCGCGACCTTGTTCGTACTACGGATTTGCTTCGGCACATTCTCGCTTTCT
CGCGTACTCGCTCACTTTGAAGAACGTCGGCACTTGGAAAGAGCATATGC
CCTGGCATACCAGCGCCGGGAAGACAGCATTTATCACAGAGACTGGGCGA
AGTCGCGAGGCGCTTTTTCCGAAGCCAAACGCTTGGACGCTGAGATCGAG
GAGACGGAATCGGAATTGGATTCCTTGGACGACACACTCGGGAACCCACA
GGGAATTTTGACTAAGCGACAGTGACGACGATTGTGTCCACCTTGTTGGG
TGCCCTTTAATTCGAAAGAACTATTTCCGTCCTGTGTCACGAAAAGATGG
CGGGCAGGATGATCCACCATGGGCAAAAAGCCGTGTCGAAAACCTTCCAC
GGGAAACATTTCAAACAAAGCATACCCTCATTTAAAGAGGGATTCTGTGC
CAATTGCTGGGATCCTTTGCTATCAAAAAGTTTATGTCACTCGCTCTTCA
CAACGGGTACCAAAACTTAACTGCGAAGGTAGACAGATGCAGGAAAGCGC
GCTTCTATTGCACATATATCATACTTTGACCGGTCGTGGGGGAACTGTAA
TGCAGAGGACATTTATGTAAAAGATAAAACATGCGCTACTTACTTCTGAT
TACATGCCAATGAACGCATCAAAAATGTTTTGCTAAGTTTTGACCTCAGA
back to top

protein sequence of rna6548

>rna6548-protein ID=rna6548-protein|Name=rna6548|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MGQKKASRPFPLLERPLCHCQFLAILALLAPARAFLLRPCSQWYLPTSHP
SSIRSSLRSSAPPTPPSDNDGPAPSLENGPASSPSPVPSSPPTPPPSPPT
AKEYFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALL
NTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLA
DTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGGNREENLSVI
KSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDG
GGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAP
ERRWEDREKELREVASSFRLTR
back to top

mRNA from alignment at CM002468.1:769866..771199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6548 ID=rna6548|Name=rna6548|organism=Nannochloropsis gaditana|type=mRNA|length=1334bp|location=Sequence derived from alignment at CM002468.1:769866..771199+ (Nannochloropsis gaditana)
ATGGGCCAGAAGaaagcctcccgcccttttccccttctcgaACGCCCCCT
GTGCCACTGCCAATTCCTTGCCATCCTAGCATTACTCGCACCGGCGCGTG
CGTTTCTACTCCGTCCCTGCTCGCAATGGTACCTGCCGACTTCCCACCCA
TCGTCAATTCGTTCTTCGCTTCGATCCTCTgcgcctcccactccacctTC
AGACAATGACGGCCCCGCACCCTCCCTCGAAAATGgacccgcttcttctc
cttcccctgttccttcctctcctcctacccctcctccttcccctcccacg
gccaaGGAATATTTCTTCGGAACGGCCGGGGAGTTCGACGAGGATTTGGC
CTACCTCGGCATTTCTCGGCAACGCCTCTTGTTGAACGCGGGCGTGGCCA
CCACGCTCGCCCTGGGTGCCAATTTCGTCGGGGTGACAAGCGCGTTGTTA
AACACCTTCTCCACCCCGGAGACGATGTCGGATTGGAAACTGGACGTGCT
CTACCCCGTGCGCGGGTTTAAACGCTTTGTCGATACCGAGGACGGTTATG
AGTTCAGGTAACGGACACAGCCAAGATACATACCAAGGGAACAAGCGAGC
GCCTGGCTAGGATGATGCGTGTCCGGATGATGCGTGTCCCAATGGTGGTC
GTGGGCCCTGGCTGCCATCCTCGGTCATTCACAGCTCGTAGGGCCTAGGC
GGGCAGGCTTCGCCTGCGTCTATCACCGTGTACCGACCTCTctttgcttc
ctccgtccctggCATTTCACAGGTACCCACAATCGTGGCTGTCCGACCAA
GCGATCCTCCTGGCAGACACCCAAGCTCGCACTGCCACCTtgtcttcgcc
ttcctctccctccgaccGCCCTCCGagggccccgccctcctcgaccagaG
CGGTCCGACCGGATGCGGCGTTTGGTCCCCCCGGAGGAAACCGGGAGGAG
AATCTCTCGGTGATTAAATCGGTCGTGATGCCGGGCTTTTCCTTGGCCGA
GACGCTGGGACCCCCGACAGCAGCGGCAGAGTTGCTCCTTTCTACAGCCA
TCGCCCCCCCTGGTTCCGGAAAGGTCGCCAATTTGGTGATGGCGCAGGAA
GAAAcgcgagatggaggggggaagacgttggaaaggaaggtgtATGTCTT
CGAGTACCTggttggaagggagggaggaagggatggcgaCCGGTCGCATA
GTTTGAGTGTGATTGCCccacgggagaaggaaagcgcgTTGTTCACCTTG
ACCGTGTTAGCACCCGAGAGACGGTGGGAGGATCGAGAAAAAGAGCTAAG
GGAAGTGGCGTCCAGTTTTCGATTGACGCGATGA
back to top

Coding sequence (CDS) from alignment at CM002468.1:769866..771199+

>rna6548 ID=rna6548|Name=rna6548|organism=Nannochloropsis gaditana|type=CDS|length=2238bp|location=Sequence derived from alignment at CM002468.1:769866..771199+ (Nannochloropsis gaditana)
ATGGGCCAGAAGaaagcctcccgcccttttccccttctcgaACGCCCCCT
GTGCCACTGCCAATTCCTTGCCATCCTAGCATTACTCGCACCGGCGCGTG
CGTTTCTACTCCGTCCCTGCTCGCAATGGTACCTGCCGACTTCCCACCCA
TCGTCAATTCGTTCTTCGCTTCGATCCTCTgcgcctcccactccacctTC
AGACAATGACGGCCCCGCACCCTCCCTCGAAAATGgacccgcttcttctc
cttcccctgttccttcctctcctcctacccctcctccttcccctcccacg
gccaaGGAATATTTCTTCGGAACGGCCGGGGAGTTCGACGAGGATTTGGC
CTACCTCGGCATTTCTCGGCAACGCCTCTTGTTGAACGCGGGCGTGGCCA
CCACGCTCGCCCTGGGTGCCAATTTCGTCGGGGTGACAAGCGCGTTGTTA
AACACCTTCTCCACCCCGGAGACGATGTCGGATTGGAAACTGGACGTGCT
CTACCCCGTGCGCGGGTTTAAACGCTTTGTCGATACCGAGGACGGTTATG
AGTTCAGGTACCCACAATCGTGGCTGTCCGACCAAGCGATCCTCCTGGCA
GACACCCAAGCTCGCACTGCCACCTtgtcttcgccttcctctccctccga
ccGCCCTCCGagggccccgccctcctcgaccagaGCGGTCCGACCGGATG
CGGCGTTTGGTCCCCCCGGAGGAAACCGGGAGGAGAATCTCTCGGTGATT
AAATCGGTCGTGATGCCGGGCTTTTCCTTGGCCGAGACGCTGGGACCCCC
GACAGCAGCGGCAGAGTTGCTCCTTTCTACAGCCATCGCCCCCCCTGGTT
CCGGAAAGGTCGCCAATTTGGTGATGGCGCAGGAAGAAAcgcgagatgga
ggggggaagacgttggaaaggaaggtgtATGTCTTCGAGTACCTggttgg
aagggagggaggaagggatggcgaCCGGTCGCATAGTTTGAGTGTGATTG
CCccacgggagaaggaaagcgcgTTGTTCACCTTGACCGTGTTAGCACCC
GAGAGACGGTGGGAGGATCGAGAAAAAGAGCTAAGGGAAGTGGCGTCCAG
TTTTCGATTGACGCGATGAATGGGCCAGAAGaaagcctcccgcccttttc
cccttctcgaACGCCCCCTGTGCCACTGCCAATTCCTTGCCATCCTAGCA
TTACTCGCACCGGCGCGTGCGTTTCTACTCCGTCCCTGCTCGCAATGGTA
CCTGCCGACTTCCCACCCATCGTCAATTCGTTCTTCGCTTCGATCCTCTg
cgcctcccactccacctTCAGACAATGACGGCCCCGCACCCTCCCTCGAA
AATGgacccgcttcttctccttcccctgttccttcctctcctcctacccc
tcctccttcccctcccacggccaaGGAATATTTCTTCGGAACGGCCGGGG
AGTTCGACGAGGATTTGGCCTACCTCGGCATTTCTCGGCAACGCCTCTTG
TTGAACGCGGGCGTGGCCACCACGCTCGCCCTGGGTGCCAATTTCGTCGG
GGTGACAAGCGCGTTGTTAAACACCTTCTCCACCCCGGAGACGATGTCGG
ATTGGAAACTGGACGTGCTCTACCCCGTGCGCGGGTTTAAACGCTTTGTC
GATACCGAGGACGGTTATGAGTTCAGGTACCCACAATCGTGGCTGTCCGA
CCAAGCGATCCTCCTGGCAGACACCCAAGCTCGCACTGCCACCTtgtctt
cgccttcctctccctccgaccGCCCTCCGagggccccgccctcctcgacc
agaGCGGTCCGACCGGATGCGGCGTTTGGTCCCCCCGGAGGAAACCGGGA
GGAGAATCTCTCGGTGATTAAATCGGTCGTGATGCCGGGCTTTTCCTTGG
CCGAGACGCTGGGACCCCCGACAGCAGCGGCAGAGTTGCTCCTTTCTACA
GCCATCGCCCCCCCTGGTTCCGGAAAGGTCGCCAATTTGGTGATGGCGCA
GGAAGAAAcgcgagatggaggggggaagacgttggaaaggaaggtgtATG
TCTTCGAGTACCTggttggaagggagggaggaagggatggcgaCCGGTCG
CATAGTTTGAGTGTGATTGCCccacgggagaaggaaagcgcgTTGTTCAC
CTTGACCGTGTTAGCACCCGAGAGACGGTGGGAGGATCGAGAAAAAGAGC
TAAGGGAAGTGGCGTCCAGTTTTCGATTGACGCGATGA
back to top
Synonyms
Publications