EWM24138.1, cds6532 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24138.1 vs. NCBI_GenBank
Match: gi|585105497|gb|EWM24138.1| (Photosystem II PsbP, oxygen evolving complex [Nannochloropsis gaditana]) HSP 1 Score: 741.11 bits (1912), Expect = 0.000e+0 Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0 Query: 1 MGQKKASRPFPLLERPLCHCQFLAILALLAPARAFLLRPCSQWYLPTSHPSSIRSSLRSSAPPTPPSDNDGPAPSLENGPASSPSPVPSSPPTPPPSPPTAKEYFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRLTR 372 MGQKKASRPFPLLERPLCHCQFLAILALLAPARAFLLRPCSQWYLPTSHPSSIRSSLRSSAPPTPPSDNDGPAPSLENGPASSPSPVPSSPPTPPPSPPTAKEYFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRLTR Sbjct: 1 MGQKKASRPFPLLERPLCHCQFLAILALLAPARAFLLRPCSQWYLPTSHPSSIRSSLRSSAPPTPPSDNDGPAPSLENGPASSPSPVPSSPPTPPPSPPTAKEYFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRLTR 372
BLAST of EWM24138.1 vs. NCBI_GenBank
Match: gi|553190785|ref|XP_005855260.1| (hypothetical protein NGA_0078900 [Nannochloropsis gaditana CCMP526] >gi|422293804|gb|EKU21104.1| hypothetical protein NGA_0078900 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 738.028 bits (1904), Expect = 0.000e+0 Identity = 371/372 (99.73%), Postives = 371/372 (99.73%), Query Frame = 0 Query: 1 MGQKKASRPFPLLERPLCHCQFLAILALLAPARAFLLRPCSQWYLPTSHPSSIRSSLRSSAPPTPPSDNDGPAPSLENGPASSPSPVPSSPPTPPPSPPTAKEYFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRLTR 372 MGQKKASRPFPLLERPLCHCQFLAILALLAPARAFLLRPCSQWYLPTSHPSSIRSSLRSSAPPTPPSDNDGPAPSLENGPASSPSPVPSSPPTPPP PPTAKEYFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRLTR Sbjct: 1 MGQKKASRPFPLLERPLCHCQFLAILALLAPARAFLLRPCSQWYLPTSHPSSIRSSLRSSAPPTPPSDNDGPAPSLENGPASSPSPVPSSPPTPPPPPPTAKEYFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRLTR 372
BLAST of EWM24138.1 vs. NCBI_GenBank
Match: gi|299116765|emb|CBN74878.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 190.274 bits (482), Expect = 4.009e-52 Identity = 117/270 (43.33%), Postives = 162/270 (60.00%), Query Frame = 0 Query: 104 YFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRW---EDREKELREVASSFRL 370 YFFG E +D+ G++R+R + + + +ALG N GVTSALL + + PE D ++D+L+P+ GFKRF EDGYEF YP +W+ D + L + +SP++ + R S+ P+ AFGP GG+ EN+SV+KS +MPGFSL TLG P AAE +LST IAPPGSG+ L+ A E+ R+ GG VY FEY V +G R ++ V+A R S LFT+TVLAPE W R ++ R++A+SFRL Sbjct: 251 YFFGKENELWDDMRANGVTRERFVRYSLLGGAVALGGNLFGVTSALLGSVA-PEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLALRRQRDLEDLRASPAAVARARQRRSSSA-----PEVAFGPQGGDGIENVSVVKSELMPGFSLKRTLGDPKEAAEKILSTVIAPPGSGREWELLEAFEDNREPGG-----LVYQFEYRV--QGQRIRKPMRNVGVVAAR--GSTLFTVTVLAPEESWGGKGGRGEKFRQMANSFRL 505
BLAST of EWM24138.1 vs. NCBI_GenBank
Match: gi|873230281|emb|CEM11308.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 157.532 bits (397), Expect = 7.307e-42 Identity = 108/234 (46.15%), Postives = 138/234 (58.97%), Query Frame = 0 Query: 146 TSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPP--GGNREENLSVIKSVV-----MPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRLTR 372 TSALL +PE +LD +YP+ G KR+V+ DGYEF YP +WL+D A+ A AR + S RP + + A PD AFGPP GG+ +EN+SV+KS + FSL LGPP AAE LL AIAP GSGKVA L+ A E R+ GG +VY+FEY+V G H+LSVIA R + LFTLTV++PE +W +LR +A+SFRLTR Sbjct: 74 TSALLRL--SPEQARKLRLDQIYPIDGLKRYVNELDGYEFLYPSNWLADVALYTAKDAARRPL--AASFDEGRPVKRAAAQGEA--PDVAFGPPGGGGDSKENVSVVKSTLRLTDDRAFFSL---LGPPKQAAETLLREAIAPEGSGKVAMLIDALSEQREPGG-----EVYLFEYIV--RGVVQPFEYHNLSVIACRGDK--LFTLTVVSPEDQWAAESDKLRRMANSFRLTR 289
BLAST of EWM24138.1 vs. NCBI_GenBank
Match: gi|873220784|emb|CEM34869.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 154.451 bits (389), Expect = 2.332e-40 Identity = 114/258 (44.19%), Postives = 150/258 (58.14%), Query Frame = 0 Query: 123 RQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRY-PQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGG--NREENLSVIKSVVM-----PGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRLTR 372 R+R L+ G A +ALGAN G+TSALL +PE +LDV+YP+ GFKR+V+ DGY +R P + +A A AR + S RP + + + A PD AFGPPGG + +EN+SV+KS + FSL LGPP AAE LL AIAP GSGKVA L+ A E R+ GG +VY+FEY+V G ++LSVIA R + LF+LTV++PE W +LR +A+SFRLTR Sbjct: 93 RRRFLVLLG-AAVVALGANLFGITSALLRL--SPEQARKLRLDVIYPIDGFKRYVNEVDGYSYRLGPAHRYTREA---AHDAARRPL--AASFDEGRPVKRAAAQSEA--PDVAFGPPGGGGDAKENVSVVKSTLRLTDDRAFFSL---LGPPKQAAETLLREAIAPEGSGKVAMLIDALSEQREPGG-----EVYLFEYIV--RGVVQPFEYNNLSVIACRGDK--LFSLTVVSPEDEWAAESDKLRRMANSFRLTR 328
BLAST of EWM24138.1 vs. NCBI_GenBank
Match: gi|971515918|dbj|GAQ82276.1| (psbP family protein [Klebsormidium nitens]) HSP 1 Score: 146.362 bits (368), Expect = 4.188e-38 Identity = 93/251 (37.05%), Postives = 132/251 (52.59%), Query Frame = 0 Query: 122 SRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPPRAPPSSTRAVRPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRLTR 372 SR+RL + + LG N GVTS LL PE KLD L+PV+GFKR +++ G+EF YP WL DQ +L R + S D PP P AFGP G+ E N+SV+ + + PGF L ++LG P A + +L IA GSGK A+L+ A + T +G TLE V E+ H++SV A + + L+++ V+ PE WE R+++LR A+SFR+T+ Sbjct: 8 SRRRLFYSGVTGLAVTLGGNLGGVTSGLLGL--NPEASRQLKLDTLFPVKGFKRCIESGQGFEFIYPAEWLGDQRLLY-----RAVERAEQSRSLDLPPIRRNGGRNRTEPIVAFGPAAGSGELNVSVVVAPIAPGFRL-QSLGSPVEAGQKILDNVIAREGSGKTADLLKA-DATPEGKYYTLEYTVRTSEWY-----------RHNVSVYATQNDQ--LYSINVMCPEAEWERRKEQLRTTAASFRVTK 236
BLAST of EWM24138.1 vs. NCBI_GenBank
Match: gi|255075061|ref|XP_002501205.1| (predicted protein [Micromonas commoda] >gi|226516469|gb|ACO62463.1| predicted protein [Micromonas commoda]) HSP 1 Score: 140.198 bits (352), Expect = 1.204e-35 Identity = 95/253 (37.55%), Postives = 126/253 (49.80%), Query Frame = 0 Query: 124 QRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRP-----PRAPPSSTRAVR-PDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRL 370 +R+ L LALG NF+G+T LLN P+ +LD++YPV GFKR + E GYEF YP +L D ++ AR A +P D P P+ P + V+ P +AFGP GG EEN+SVI S PG + G AE LL+ +APPGSGK + L A T GG +K + FEY + D H+++V EK L+TL PE W R E R VA S ++ Sbjct: 14 RRVFLGTLATAGLALGGNFLGITGKLLN--GVPDVAESLRLDLIYPVGGFKRAYNPEKGYEFVYPADYLGDATMV-----ARAANQREAMNPLDPPALGDVPKPPKIFGQTVQEPQSAFGPMGGTGEENVSVIVSRSPPGGFKLDRFGDAQNQAEWLLANILAPPGSGKTSELFDAYTRTSGGG-----QKYFTFEYTI----KTDAWYRHNVAVFT--EKGGRLYTLVAQVPEVDWGRRRDEFRRVADSLKV 248
BLAST of EWM24138.1 vs. NCBI_GenBank
Match: gi|545369249|ref|XP_005649374.1| (Mog1p/PsbP-like protein [Coccomyxa subellipsoidea C-169] >gi|384251352|gb|EIE24830.1| Mog1p/PsbP-like protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 139.813 bits (351), Expect = 2.941e-35 Identity = 99/237 (41.77%), Postives = 128/237 (54.01%), Query Frame = 0 Query: 138 LGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAIL--LADTQARTATLSSPSSPSDRPPRAPPSSTRAV-RPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKVYVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRLT 371 L +NF G TSALL + KLD LYPV G KR +DT++GYEF YP WLSDQ + A+ R A+L D PP A +++R+V P AA+GPPG EENLSV+ + + GF + E LG P AAE LST +AP GSG+ A+L+ A E RD G+ Y EY V H+LSV A R L+TL RW + ++R A SFR++ Sbjct: 48 LVSNFGGSTSALL-SVDGGRLAGRLKLDALYPVAGHKRCLDTQNGYEFLYPSRWLSDQRLYRRYAERVERQASL-------DPPPAARSANSRSVAEPTAAYGPPGSTGEENLSVVVAPIAGGFKI-ENLGGPRQAAERFLSTTVAPEGSGRTADLIDAYER-RDESGELY----YTLEYTVQSP----NFFRHNLSVYAAR--NGLLYTLNGQCQNSRWPQLQADMRVAAESFRVS 264
BLAST of EWM24138.1 vs. NCBI_GenBank
Match: gi|302787070|ref|XP_002975305.1| (hypothetical protein SELMODRAFT_15379, partial [Selaginella moellendorffii] >gi|300156879|gb|EFJ23506.1| hypothetical protein SELMODRAFT_15379, partial [Selaginella moellendorffii]) HSP 1 Score: 137.887 bits (346), Expect = 4.338e-35 Identity = 97/252 (38.49%), Postives = 130/252 (51.59%), Query Frame = 0 Query: 124 QRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRPP----RAPPSSTRAVRPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKV-YVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRL 370 +R + A L +GANF+G TS +L PE +LDVLYPVRGF R +DT+ G+EF YPQ W DQ IL R+ + P D P R+P V P AFGPPG + E N+SVI + ++P FSL E LG AA+L+L IAPPGS K A LV A RD E+ V Y EY V + +V + LF+L V P+ +W + +E ++A+SF++ Sbjct: 7 RRFTIGILSAAGLGIGANFLGTTSFVLGL--NPEVARSLRLDVLYPVRGFFRCLDTDKGFEFIYPQDWFGDQKILY-----RSIEKAEKERPLDLPALKEQRSPAKVL--VEPVTAFGPPGTDGEVNVSVIVAPILPSFSL-EQLGDAKEAAKLILDKFIAPPGSKKTATLVDALTR-RD------EKAVYYTLEYCV------EAPTFFRHNVAVYTSLKGKLFSLNVQTPQAQWSHQREEFIQIANSFKV 235
BLAST of EWM24138.1 vs. NCBI_GenBank
Match: gi|302822867|ref|XP_002993089.1| (hypothetical protein SELMODRAFT_4187, partial [Selaginella moellendorffii] >gi|300139089|gb|EFJ05837.1| hypothetical protein SELMODRAFT_4187, partial [Selaginella moellendorffii]) HSP 1 Score: 136.732 bits (343), Expect = 1.191e-34 Identity = 94/252 (37.30%), Postives = 128/252 (50.79%), Query Frame = 0 Query: 124 QRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILLADTQARTATLSSPSSPSDRP----PRAPPSSTRAVRPDAAFGPPGGNREENLSVIKSVVMPGFSLAETLGPPTAAAELLLSTAIAPPGSGKVANLVMAQEETRDGGGKTLERKV-YVFEYLVGREGGRDGDRSHSLSVIAPREKESALFTLTVLAPERRWEDREKELREVASSFRL 370 +R + A L +GANF+G TS +L PE +LDVLYPVRGF R DT+ G+EF YPQ W DQ IL R+ + P D P R+P V P AFGPPG + E N+SVI + ++P FSL E LG AA+L+L IAPPGS K A LV D + E+ V Y +Y V + +V + LF+L V P+ +W + +E ++A+SF++ Sbjct: 7 RRFTIGILSAAGLGIGANFLGTTSFVLGL--NPEVARSLRLDVLYPVRGFFRCFDTDKGFEFIYPQDWFGDQKILY-----RSIEKAEKERPLDLPALKEQRSPAKVL--VEPVTAFGPPGTDGEVNVSVIVAPILPSFSL-EQLGDAREAAKLILDKFIAPPGSKKTATLV-------DASTRRDEKAVYYTLDYCV------EAPTFFRHNVAVYTSLKGKLFSLNVQTPQAQWSHQREEFIQIANSFKV 235 The following BLAST results are available for this feature:
BLAST of EWM24138.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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