rna6546, rna6546 (mRNA) Nannochloropsis gaditana

Overview
Namerna6546
Unique Namerna6546
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length833
Alignment locationCM002468.1:765462..766992 -

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Properties
Property NameValue
Productreplication factor c subunit 5
Orig transcript idgnl|cribi|Naga_100306g1.2058.mrna
Orig protein idgnl|cribi|Naga_100306g1.2058
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:765462..766992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100306g1gene6324Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6546rna6546-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24137.1cds6530Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6546 ID=rna6546|Name=rna6546|organism=Nannochloropsis gaditana|type=mRNA|length=833bp
CGCAGGCACAACCAAGTGGCCCGCCAGTGTACGTGCATTGCTTGTGCCTG
GCTTCCGTCGCGTCGTCGAGCCGAGCATCGATTTGGTGTTCCTGGGTTTT
CTTTTTCCTGTGTTGCACCGCCTTGCCATGTTCCCTTTCGGTCGATCCCG
TCGACCTGACAGAGACTTGGATGCCCTCAAACGTCAACAAATAGAGGCAC
TCAAGCAAGCTGTGCCGACAGCTAGGGCAGTCAATTCGGTACGTTTACAA
ATATCGCAAGGGTTTATTCATCTACCTTTTTCGGACATGGTCTATGGTTC
CTGAGTGTTGAAATTTAAGTCTTCCGCAATGCATTTCTTGCCTCGGAAGA
CTGTGAGTGAGCGAAGTGTCACTCACAAAGCATTTCGTTGGAGCTCTATC
TCTTTCTCTAGATTAGCTCATATTACAAACCACCCATCAGCTTTTCCGAC
CGGTCCATCTCCTCCCTTCCTCTTTCCCTCCCTCCCTGTCTTCCCTCCCT
TCCTCCCTCCCTCCATCCCCCCCAATCCCAGGACTCCTCTCTGTTCGACC
TCCCGATCCCCTCCGCCTCTGCCACAGCCGTCCTTCGCGTCTCCCTCCCC
CACAACTTCCCGGACGAGCCCCCGTCCCTCCGCCTCCTGGGCCTGGGGGT
CCGGCATGCCTGGATTGACGCCACTGGCGCCGTTGTCCGGCACCCGAAGC
TGAGTCCCTGGCAATCCACCCACTCCCTCGCAGAGGTGTGCACGAGCGTC
ATGCAAGAGATCACGAAAACGGTGGGGGGTTCCCCGACGGTGGGCGTGGG
CGTGGCCGTTCAATGGGGTGGGGGAGGAGGAGG
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protein sequence of rna6546

>rna6546-protein ID=rna6546-protein|Name=rna6546|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
MTSMDMDASSSTETEKIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSL
QDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGAS
KYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLT
NDAQFALRRVIEKYTKNTRSV
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mRNA from alignment at CM002468.1:765462..766992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6546 ID=rna6546|Name=rna6546|organism=Nannochloropsis gaditana|type=mRNA|length=1531bp|location=Sequence derived from alignment at CM002468.1:765462..766992- (Nannochloropsis gaditana)
TAATAAAACAGACGCCTCCCGACTCACGCTTCTCCGGCGCACACTTTCGT
GTCAGGCATCACGCTGCGGTAGTGGTCAGGATAAAGAGCAGCATGACATC
CATGGACATGGATGCTTCCAGCAGGTACGTTGCGTCCCCTGTTTCCTTGC
CCTCCTCCTGAGGATGTTCCCTCAGCCCCTCAACATAGCAGTCTTTGGGC
CACAAAAGTGCTTTATTTTTTGTTTCTTTCAGTGTTCGGGTTGAGACTCA
ACTCTTCTTAGACCGAGCATGCGCGTACCATTGTCAGTAAAATCCCCGTC
ATCTGCCCACGCTCTCCTCCTTTCCCATCCACATCAATACAGCACCGAGA
CAGAGAAAATAGACGCCGCACCAGACGTTCGTCAAGTCCAACCTGCAGCC
GCGCCCGATCAAGCCTTCAATAGCATGCCCTGGGTCGAAAAATACCGGCC
CACGTCCCTACAAGACCTGGTGGCCCATGAAGAGATTATCTCCATCCGTA
AGTCGGCACCAGGACGGAGGCTCCGTCTTGGCGTCAGTGCCCGAGGACCT
GTACGATCTCGCGCCTCCCTCCCCATCAAATTGATCTCGAACGTGTCGCT
TTCTCCACCTGGCTTCACACGTCCCTTGTGGAGGCACAGAGGCGTGCATG
CGCTGTCGTTTTGCATGTTTGGATGGATCCCTCCCACCGCCCCCCGTCCC
CCCTCCCTTTCCGCTTCCTTCCTCCCGCTCATCCCTTCCATTTCATTCCC
CCTTCCCCCCCCCTCTCTTCTCTCCACCTCCTCTGTGGCATGCCCGTACC
AGTGACGCGTCTCATTGAAAAAAACCAGCTGCCCCACCTCCTCTTCTATG
GCCCGCCTGGAACAGGTACGTGCTCTCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCTTCCTTCCCTCCCCTCCCCTTTTTTATCCTTGGCTCCCTTTCTTT
TCTCCGATCCGTCTGTAGTGTGTAGCTTCCATCACTATCACCGGGTTTCC
TCACCAGGCATGGCAACTCTCATCGTTGCCCTTCCTCCCCCCCTCCCTCC
CTCCCTCCCTCCCTCCCGCCCTCCCTCCCCACTGCCCCCAGGCAAAACCT
CCACCATCCTCGCCTGCGCCAAGCAGATGTACGGCGCGAGCAAATACGGG
GCCATGACCTTGGAGCTGAACGCCTCGGACGAGAGAGGCATTGACGTGGT
GCGTCAACAGATCAAAGAGTTCGCGGCTACCAAGCGTTTGTTCAGGTGCC
CACCTCCCCGCCCTCCTTCCCTCCCTCCCTCCGCCCCTGCCTCCCTTCCT
TCCTTTACACCCTCCCTCTCCCACCTTTCGTCTCTCTTACTCTGACTCTG
TGCCATCAACTCATGTTCCTTCAACCTCTCGGTCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTGGCAGCAATGGCGTCAAGCTCGTGATCCTCGA
CGAAGCCGACCATCTGACCAACGACGCTCAATTTGCTCTTCGCCGAGTTA
TCGAGAAATACACCAAGAACACTCGGTCCGT
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Coding sequence (CDS) from alignment at CM002468.1:765462..766992-

>rna6546 ID=rna6546|Name=rna6546|organism=Nannochloropsis gaditana|type=CDS|length=2560bp|location=Sequence derived from alignment at CM002468.1:765462..766992- (Nannochloropsis gaditana)
CAATGGCGTCAAGCTCGTGATCCTCGACGAAGCCGACCATCTGACCAACG
ACGCTCAATTTGCTCTTCGCCGAGTTATCGAGAAATACACCAAGAACACT
CGGTCCGTGCAAAACCTCCACCATCCTCGCCTGCGCCAAGCAGATGTACG
GCGCGAGCAAATACGGGGCCATGACCTTGGAGCTGAACGCCTCGGACGAG
AGAGGCATTGACGTGGTGCGTCAACAGATCAAAGAGTTCGCGGCTACCAA
GCGTTTGTTCAGTGACGCGTCTCATTGAAAAAAACCAGCTGCCCCACCTC
CTCTTCTATGGCCCGCCTGGAACAGCACCGAGACAGAGAAAATAGACGCC
GCACCAGACGTTCGTCAAGTCCAACCTGCAGCCGCGCCCGATCAAGCCTT
CAATAGCATGCCCTGGGTCGAAAAATACCGGCCCACGTCCCTACAAGACC
TGGTGGCCCATGAAGAGATTATCTCCATCCATGACATCCATGGACATGGA
TGCTTCCAGCAGCAATGGCGTCAAGCTCGTGATCCTCGACGAAGCCGACC
ATCTGACCAACGACGCTCAATTTGCTCTTCGCCGAGTTATCGAGAAATAC
ACCAAGAACACTCGGTCCGTGCAAAACCTCCACCATCCTCGCCTGCGCCA
AGCAGATGTACGGCGCGAGCAAATACGGGGCCATGACCTTGGAGCTGAAC
GCCTCGGACGAGAGAGGCATTGACGTGGTGCGTCAACAGATCAAAGAGTT
CGCGGCTACCAAGCGTTTGTTCAGTGACGCGTCTCATTGAAAAAAACCAG
CTGCCCCACCTCCTCTTCTATGGCCCGCCTGGAACAGCACCGAGACAGAG
AAAATAGACGCCGCACCAGACGTTCGTCAAGTCCAACCTGCAGCCGCGCC
CGATCAAGCCTTCAATAGCATGCCCTGGGTCGAAAAATACCGGCCCACGT
CCCTACAAGACCTGGTGGCCCATGAAGAGATTATCTCCATCCATGACATC
CATGGACATGGATGCTTCCAGCAGCAATGGCGTCAAGCTCGTGATCCTCG
ACGAAGCCGACCATCTGACCAACGACGCTCAATTTGCTCTTCGCCGAGTT
ATCGAGAAATACACCAAGAACACTCGGTCCGTGCAAAACCTCCACCATCC
TCGCCTGCGCCAAGCAGATGTACGGCGCGAGCAAATACGGGGCCATGACC
TTGGAGCTGAACGCCTCGGACGAGAGAGGCATTGACGTGGTGCGTCAACA
GATCAAAGAGTTCGCGGCTACCAAGCGTTTGTTCAGTGACGCGTCTCATT
GAAAAAAACCAGCTGCCCCACCTCCTCTTCTATGGCCCGCCTGGAACAGC
ACCGAGACAGAGAAAATAGACGCCGCACCAGACGTTCGTCAAGTCCAACC
TGCAGCCGCGCCCGATCAAGCCTTCAATAGCATGCCCTGGGTCGAAAAAT
ACCGGCCCACGTCCCTACAAGACCTGGTGGCCCATGAAGAGATTATCTCC
ATCCATGACATCCATGGACATGGATGCTTCCAGCAGCAATGGCGTCAAGC
TCGTGATCCTCGACGAAGCCGACCATCTGACCAACGACGCTCAATTTGCT
CTTCGCCGAGTTATCGAGAAATACACCAAGAACACTCGGTCCGTGCAAAA
CCTCCACCATCCTCGCCTGCGCCAAGCAGATGTACGGCGCGAGCAAATAC
GGGGCCATGACCTTGGAGCTGAACGCCTCGGACGAGAGAGGCATTGACGT
GGTGCGTCAACAGATCAAAGAGTTCGCGGCTACCAAGCGTTTGTTCAGTG
ACGCGTCTCATTGAAAAAAACCAGCTGCCCCACCTCCTCTTCTATGGCCC
GCCTGGAACAGCACCGAGACAGAGAAAATAGACGCCGCACCAGACGTTCG
TCAAGTCCAACCTGCAGCCGCGCCCGATCAAGCCTTCAATAGCATGCCCT
GGGTCGAAAAATACCGGCCCACGTCCCTACAAGACCTGGTGGCCCATGAA
GAGATTATCTCCATCCATGACATCCATGGACATGGATGCTTCCAGCAGCA
ATGGCGTCAAGCTCGTGATCCTCGACGAAGCCGACCATCTGACCAACGAC
GCTCAATTTGCTCTTCGCCGAGTTATCGAGAAATACACCAAGAACACTCG
GTCCGTGCAAAACCTCCACCATCCTCGCCTGCGCCAAGCAGATGTACGGC
GCGAGCAAATACGGGGCCATGACCTTGGAGCTGAACGCCTCGGACGAGAG
AGGCATTGACGTGGTGCGTCAACAGATCAAAGAGTTCGCGGCTACCAAGC
GTTTGTTCAGTGACGCGTCTCATTGAAAAAAACCAGCTGCCCCACCTCCT
CTTCTATGGCCCGCCTGGAACAGCACCGAGACAGAGAAAATAGACGCCGC
ACCAGACGTTCGTCAAGTCCAACCTGCAGCCGCGCCCGATCAAGCCTTCA
ATAGCATGCCCTGGGTCGAAAAATACCGGCCCACGTCCCTACAAGACCTG
GTGGCCCATGAAGAGATTATCTCCATCCATGACATCCATGGACATGGATG
CTTCCAGCAG
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Synonyms
Publications