EWM24137.1, cds6530 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|585105496|gb|EWM24137.1| (replication factor c subunit 5, partial [Nannochloropsis gaditana]) HSP 1 Score: 357.836 bits (917), Expect = 4.145e-125 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query: 1 MTSMDMDASSSTETEKIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRSV 171
MTSMDMDASSSTETEKIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRSV
Sbjct: 1 MTSMDMDASSSTETEKIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRSV 171
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|299116532|emb|CBN74720.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 226.483 bits (576), Expect = 2.542e-70 Identity = 105/137 (76.64%), Postives = 122/137 (89.05%), Query Frame = 0
Query: 33 DQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
+ A ++PWVEKYRP+SL++LVAHE+I+ IL +LI N+LPHLLFYGPPGTGKTSTILACAK++YGA + M LELNASD+RGIDVVR QIKEFA TKRLFS+GVKLVILDEAD +TNDAQFALRRVIEKYTK+TR
Sbjct: 57 ETARQTLPWVEKYRPSSLEELVAHEDIVGILQKLIASNKLPHLLFYGPPGTGKTSTILACAKKLYGAD-FKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKYTKHTR 192
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|301114403|ref|XP_002998971.1| (replication factor C subunit 5 [Phytophthora infestans T30-4] >gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]) HSP 1 Score: 220.705 bits (561), Expect = 1.762e-68 Identity = 102/154 (66.23%), Postives = 127/154 (82.47%), Query Frame = 0
Query: 16 KIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
++ +A D + ++ +++ S PWVEKYRP+SL DL+AH+EIIS L RLI+ +LPHLLFYGPPGTGKTS I+A A+++YG + YG+M LELNASD+RGIDVVR QIKEFA TK+LFS GVKL+ILDEAD +TNDAQF+LRRVIEKYTKN R
Sbjct: 5 EMKSAEDAPSFEGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYGKN-YGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNAR 157
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|675205019|ref|XP_008911394.1| (hypothetical protein PPTG_16313 [Phytophthora parasitica INRA-310] >gi|566014942|gb|ETI37853.1| hypothetical protein F443_16282 [Phytophthora parasitica P1569] >gi|567952417|gb|ETK78094.1| hypothetical protein L915_15830 [Phytophthora parasitica] >gi|567981078|gb|ETL31524.1| hypothetical protein L916_15726 [Phytophthora parasitica] >gi|568010579|gb|ETL84765.1| hypothetical protein L917_15531 [Phytophthora parasitica] >gi|568040464|gb|ETM37921.1| hypothetical protein L914_15672 [Phytophthora parasitica] >gi|568088418|gb|ETN03278.1| hypothetical protein PPTG_16313 [Phytophthora parasitica INRA-310] >gi|570318676|gb|ETO66624.1| hypothetical protein F444_16276 [Phytophthora parasitica P1976] >gi|570942517|gb|ETP07774.1| hypothetical protein F441_16105 [Phytophthora parasitica CJ01A1] >gi|570973061|gb|ETP35805.1| hypothetical protein F442_16135 [Phytophthora parasitica P10297] >gi|970639818|gb|KUF82648.1| Replication factor C subunit 5 [Phytophthora nicotianae] >gi|970653052|gb|KUF91599.1| hypothetical protein AM588_10003190 [Phytophthora nicotianae]) HSP 1 Score: 220.32 bits (560), Expect = 2.312e-68 Identity = 102/154 (66.23%), Postives = 127/154 (82.47%), Query Frame = 0
Query: 16 KIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
++ +A D + ++ +++ S PWVEKYRP+SL DL+AH+EIIS L RLI+ +LPHLLFYGPPGTGKTS I+A A+++YG + YG+M LELNASD+RGIDVVR QIKEFA TK+LFS GVKL+ILDEAD +TNDAQF+LRRVIEKYTKN R
Sbjct: 5 EMKSAEDAPAFEGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYGKN-YGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNAR 157
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|1214702030|gb|OWZ14295.1| (Replication factor C subunit 5 [Phytophthora megakarya]) HSP 1 Score: 219.935 bits (559), Expect = 3.141e-68 Identity = 102/153 (66.67%), Postives = 126/153 (82.35%), Query Frame = 0
Query: 17 IDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
+ +A D + ++ +++ S PWVEKYRP+SL DL+AH+EIIS L RLI+ +LPHLLFYGPPGTGKTS I+A A+++YG + YG+M LELNASD+RGIDVVR QIKEFA TK+LFS GVKL+ILDEAD +TNDAQF+LRRVIEKYTKN R
Sbjct: 1 MKSAEDAPAFEGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYG-NNYGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNAR 152
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|1173959934|gb|OQS06108.1| (replication factor C subunit 5 [Thraustotheca clavata]) HSP 1 Score: 213.772 bits (543), Expect = 6.821e-66 Identity = 98/140 (70.00%), Postives = 121/140 (86.43%), Query Frame = 0
Query: 30 AAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
++ +++ +S PWVEKYRP+SL DL+AH EI+S L RLI+ +LPHLLFYGPPGTGKTS +LA A+++YG S Y +M LELNASD+RGI+VVR QIKEFA TK+LFS+G+KL+ILDEAD +TNDAQFALRRVIEKYTKN R
Sbjct: 10 SSKNRSTDSWPWVEKYRPSSLNDLIAHAEIVSTLNRLIDSQKLPHLLFYGPPGTGKTSMMLAAARRLYGNS-YQSMVLELNASDDRGINVVRDQIKEFAGTKKLFSDGIKLIILDEADAMTNDAQFALRRVIEKYTKNAR 148
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|224009073|ref|XP_002293495.1| (replication factor C 36 kDa subunit [Thalassiosira pseudonana CCMP1335] >gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 211.46 bits (537), Expect = 2.882e-65 Identity = 96/132 (72.73%), Postives = 116/132 (87.88%), Query Frame = 0
Query: 39 MPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASK-YGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
MPWVEKYRP L+DLVAHE+I++ILTRLI+ + LPHLL YGPPGTGKTSTI+A AK+MYG++ Y +M LELNASD RGIDVVR +IKEFA T++LF +G+KL+ILDEAD +T+DAQFALRRVIEK+TKN R
Sbjct: 1 MPWVEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYGSTAAYSSMALELNASDSRGIDVVRNEIKEFAGTRQLFHSGIKLIILDEADAMTSDAQFALRRVIEKHTKNAR 132
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|1173946713|gb|OQR95218.1| (replication factor C subunit 5 [Achlya hypogyna]) HSP 1 Score: 212.231 bits (539), Expect = 3.085e-65 Identity = 97/154 (62.99%), Postives = 125/154 (81.17%), Query Frame = 0
Query: 16 KIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
K+ D+ Q ++ +++ S PWVEKYRP+SL DL+AH +I++ L RLI+ ++PHLLFYGPPGTGKTS +LA A+++YG + Y +M LELNASD+RGI+VVR QIKEFA TK+LFS+G+KL+ILDEAD +TNDAQFALRRVIEKYTKN R
Sbjct: 2 KMTITEDLCSFQGISSKNRSTESWPWVEKYRPSSLNDLIAHTDIVATLNRLIDSQKMPHLLFYGPPGTGKTSMMLAAARRLYG-NNYQSMVLELNASDDRGINVVRDQIKEFAGTKKLFSDGIKLIILDEADAMTNDAQFALRRVIEKYTKNAR 154
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|673024034|ref|XP_008865978.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574477545|gb|ETW04541.1| hypothetical protein, variant [Aphanomyces invadans]) HSP 1 Score: 211.846 bits (538), Expect = 3.401e-65 Identity = 97/140 (69.29%), Postives = 120/140 (85.71%), Query Frame = 0
Query: 30 AAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
++ ++ ++ PWVEKYRP+SL DL+AH +IIS L RLI+ +LPHLLFYGPPGTGKTS ILA A+++YG + Y +M LELNASD+RGI+VVR QIKEFA TK+LFS+G+KL+ILDEAD +TNDAQFALRRVIEKYTKN R
Sbjct: 14 SSKNRTTDNWPWVEKYRPSSLDDLIAHADIISTLNRLIDAQKLPHLLFYGPPGTGKTSMILAAARRLYG-NNYASMVLELNASDDRGINVVRDQIKEFAGTKKLFSSGIKLIILDEADAMTNDAQFALRRVIEKYTKNAR 152
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|698808454|ref|XP_009837256.1| (hypothetical protein H257_11880 [Aphanomyces astaci] >gi|574107871|gb|ETV73381.1| hypothetical protein H257_11880 [Aphanomyces astaci]) HSP 1 Score: 211.846 bits (538), Expect = 3.637e-65 Identity = 98/140 (70.00%), Postives = 119/140 (85.00%), Query Frame = 0
Query: 30 AAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
++ ++A + PWVEKYRP+SL DL+AH +IIS L RLI+ +LPHLLFYGPPGTGKTS ILA A+++YG + Y +M LELNASD+RGI VVR QIKEFA TK+LFS+G+KL+ILDEAD +TNDAQFALRRVIEKYTKN R
Sbjct: 14 SSKNRATENWPWVEKYRPSSLDDLIAHADIISTLNRLIDAQKLPHLLFYGPPGTGKTSMILAAARRLYG-NNYASMVLELNASDDRGISVVRDQIKEFAGTKKLFSSGIKLIILDEADAMTNDAQFALRRVIEKYTKNAR 152 The following BLAST results are available for this feature:
BLAST of EWM24137.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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