EWM24137.1, cds6530 (CDS) Nannochloropsis gaditana

Overview
NameEWM24137.1
Unique Namecds6530
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:766869..766900 -
Alignment locationCM002468.1:766496..766650 -
Alignment locationCM002468.1:766128..766190 -
Alignment locationCM002468.1:765748..765901 -
Alignment locationCM002468.1:765462..765569 -

Link to JBrowse

Properties
Property NameValue
Start range765462
Start range.
Protein idEWM24137.1
Productreplication factor c subunit 5
Partialtrue
Orig transcript idgnl|cribi|Naga_100306g1.2058.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:766869..766900 -
CM002468.1supercontigCM002468.1:766496..766650 -
CM002468.1supercontigCM002468.1:766128..766190 -
CM002468.1supercontigCM002468.1:765748..765901 -
CM002468.1supercontigCM002468.1:765462..765569 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase
IPR003593AAA+_ATPase
Homology
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|585105496|gb|EWM24137.1| (replication factor c subunit 5, partial [Nannochloropsis gaditana])

HSP 1 Score: 357.836 bits (917), Expect = 4.145e-125
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query:    1 MTSMDMDASSSTETEKIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRSV 171
            MTSMDMDASSSTETEKIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRSV
Sbjct:    1 MTSMDMDASSSTETEKIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTRSV 171          
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|299116532|emb|CBN74720.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 226.483 bits (576), Expect = 2.542e-70
Identity = 105/137 (76.64%), Postives = 122/137 (89.05%), Query Frame = 0
Query:   33 DQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
            + A  ++PWVEKYRP+SL++LVAHE+I+ IL +LI  N+LPHLLFYGPPGTGKTSTILACAK++YGA  +  M LELNASD+RGIDVVR QIKEFA TKRLFS+GVKLVILDEAD +TNDAQFALRRVIEKYTK+TR
Sbjct:   57 ETARQTLPWVEKYRPSSLEELVAHEDIVGILQKLIASNKLPHLLFYGPPGTGKTSTILACAKKLYGAD-FKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKYTKHTR 192          
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|301114403|ref|XP_002998971.1| (replication factor C subunit 5 [Phytophthora infestans T30-4] >gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4])

HSP 1 Score: 220.705 bits (561), Expect = 1.762e-68
Identity = 102/154 (66.23%), Postives = 127/154 (82.47%), Query Frame = 0
Query:   16 KIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
            ++ +A D    +  ++ +++  S PWVEKYRP+SL DL+AH+EIIS L RLI+  +LPHLLFYGPPGTGKTS I+A A+++YG + YG+M LELNASD+RGIDVVR QIKEFA TK+LFS GVKL+ILDEAD +TNDAQF+LRRVIEKYTKN R
Sbjct:    5 EMKSAEDAPSFEGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYGKN-YGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNAR 157          
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|675205019|ref|XP_008911394.1| (hypothetical protein PPTG_16313 [Phytophthora parasitica INRA-310] >gi|566014942|gb|ETI37853.1| hypothetical protein F443_16282 [Phytophthora parasitica P1569] >gi|567952417|gb|ETK78094.1| hypothetical protein L915_15830 [Phytophthora parasitica] >gi|567981078|gb|ETL31524.1| hypothetical protein L916_15726 [Phytophthora parasitica] >gi|568010579|gb|ETL84765.1| hypothetical protein L917_15531 [Phytophthora parasitica] >gi|568040464|gb|ETM37921.1| hypothetical protein L914_15672 [Phytophthora parasitica] >gi|568088418|gb|ETN03278.1| hypothetical protein PPTG_16313 [Phytophthora parasitica INRA-310] >gi|570318676|gb|ETO66624.1| hypothetical protein F444_16276 [Phytophthora parasitica P1976] >gi|570942517|gb|ETP07774.1| hypothetical protein F441_16105 [Phytophthora parasitica CJ01A1] >gi|570973061|gb|ETP35805.1| hypothetical protein F442_16135 [Phytophthora parasitica P10297] >gi|970639818|gb|KUF82648.1| Replication factor C subunit 5 [Phytophthora nicotianae] >gi|970653052|gb|KUF91599.1| hypothetical protein AM588_10003190 [Phytophthora nicotianae])

HSP 1 Score: 220.32 bits (560), Expect = 2.312e-68
Identity = 102/154 (66.23%), Postives = 127/154 (82.47%), Query Frame = 0
Query:   16 KIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
            ++ +A D    +  ++ +++  S PWVEKYRP+SL DL+AH+EIIS L RLI+  +LPHLLFYGPPGTGKTS I+A A+++YG + YG+M LELNASD+RGIDVVR QIKEFA TK+LFS GVKL+ILDEAD +TNDAQF+LRRVIEKYTKN R
Sbjct:    5 EMKSAEDAPAFEGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYGKN-YGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNAR 157          
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|1214702030|gb|OWZ14295.1| (Replication factor C subunit 5 [Phytophthora megakarya])

HSP 1 Score: 219.935 bits (559), Expect = 3.141e-68
Identity = 102/153 (66.67%), Postives = 126/153 (82.35%), Query Frame = 0
Query:   17 IDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
            + +A D    +  ++ +++  S PWVEKYRP+SL DL+AH+EIIS L RLI+  +LPHLLFYGPPGTGKTS I+A A+++YG + YG+M LELNASD+RGIDVVR QIKEFA TK+LFS GVKL+ILDEAD +TNDAQF+LRRVIEKYTKN R
Sbjct:    1 MKSAEDAPAFEGISSRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYG-NNYGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNAR 152          
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|1173959934|gb|OQS06108.1| (replication factor C subunit 5 [Thraustotheca clavata])

HSP 1 Score: 213.772 bits (543), Expect = 6.821e-66
Identity = 98/140 (70.00%), Postives = 121/140 (86.43%), Query Frame = 0
Query:   30 AAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
            ++ +++ +S PWVEKYRP+SL DL+AH EI+S L RLI+  +LPHLLFYGPPGTGKTS +LA A+++YG S Y +M LELNASD+RGI+VVR QIKEFA TK+LFS+G+KL+ILDEAD +TNDAQFALRRVIEKYTKN R
Sbjct:   10 SSKNRSTDSWPWVEKYRPSSLNDLIAHAEIVSTLNRLIDSQKLPHLLFYGPPGTGKTSMMLAAARRLYGNS-YQSMVLELNASDDRGINVVRDQIKEFAGTKKLFSDGIKLIILDEADAMTNDAQFALRRVIEKYTKNAR 148          
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|224009073|ref|XP_002293495.1| (replication factor C 36 kDa subunit [Thalassiosira pseudonana CCMP1335] >gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 211.46 bits (537), Expect = 2.882e-65
Identity = 96/132 (72.73%), Postives = 116/132 (87.88%), Query Frame = 0
Query:   39 MPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASK-YGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
            MPWVEKYRP  L+DLVAHE+I++ILTRLI+ + LPHLL YGPPGTGKTSTI+A AK+MYG++  Y +M LELNASD RGIDVVR +IKEFA T++LF +G+KL+ILDEAD +T+DAQFALRRVIEK+TKN R
Sbjct:    1 MPWVEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYGSTAAYSSMALELNASDSRGIDVVRNEIKEFAGTRQLFHSGIKLIILDEADAMTSDAQFALRRVIEKHTKNAR 132          
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|1173946713|gb|OQR95218.1| (replication factor C subunit 5 [Achlya hypogyna])

HSP 1 Score: 212.231 bits (539), Expect = 3.085e-65
Identity = 97/154 (62.99%), Postives = 125/154 (81.17%), Query Frame = 0
Query:   16 KIDAAPDVRQVQPAAAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
            K+    D+   Q  ++ +++  S PWVEKYRP+SL DL+AH +I++ L RLI+  ++PHLLFYGPPGTGKTS +LA A+++YG + Y +M LELNASD+RGI+VVR QIKEFA TK+LFS+G+KL+ILDEAD +TNDAQFALRRVIEKYTKN R
Sbjct:    2 KMTITEDLCSFQGISSKNRSTESWPWVEKYRPSSLNDLIAHTDIVATLNRLIDSQKMPHLLFYGPPGTGKTSMMLAAARRLYG-NNYQSMVLELNASDDRGINVVRDQIKEFAGTKKLFSDGIKLIILDEADAMTNDAQFALRRVIEKYTKNAR 154          
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|673024034|ref|XP_008865978.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574477545|gb|ETW04541.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 211.846 bits (538), Expect = 3.401e-65
Identity = 97/140 (69.29%), Postives = 120/140 (85.71%), Query Frame = 0
Query:   30 AAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
            ++ ++  ++ PWVEKYRP+SL DL+AH +IIS L RLI+  +LPHLLFYGPPGTGKTS ILA A+++YG + Y +M LELNASD+RGI+VVR QIKEFA TK+LFS+G+KL+ILDEAD +TNDAQFALRRVIEKYTKN R
Sbjct:   14 SSKNRTTDNWPWVEKYRPSSLDDLIAHADIISTLNRLIDAQKLPHLLFYGPPGTGKTSMILAAARRLYG-NNYASMVLELNASDDRGINVVRDQIKEFAGTKKLFSSGIKLIILDEADAMTNDAQFALRRVIEKYTKNAR 152          
BLAST of EWM24137.1 vs. NCBI_GenBank
Match: gi|698808454|ref|XP_009837256.1| (hypothetical protein H257_11880 [Aphanomyces astaci] >gi|574107871|gb|ETV73381.1| hypothetical protein H257_11880 [Aphanomyces astaci])

HSP 1 Score: 211.846 bits (538), Expect = 3.637e-65
Identity = 98/140 (70.00%), Postives = 119/140 (85.00%), Query Frame = 0
Query:   30 AAPDQAFNSMPWVEKYRPTSLQDLVAHEEIISILTRLIEKNQLPHLLFYGPPGTGKTSTILACAKQMYGASKYGAMTLELNASDERGIDVVRQQIKEFAATKRLFSNGVKLVILDEADHLTNDAQFALRRVIEKYTKNTR 169
            ++ ++A  + PWVEKYRP+SL DL+AH +IIS L RLI+  +LPHLLFYGPPGTGKTS ILA A+++YG + Y +M LELNASD+RGI VVR QIKEFA TK+LFS+G+KL+ILDEAD +TNDAQFALRRVIEKYTKN R
Sbjct:   14 SSKNRATENWPWVEKYRPSSLDDLIAHADIISTLNRLIDAQKLPHLLFYGPPGTGKTSMILAAARRLYG-NNYASMVLELNASDDRGISVVRDQIKEFAGTKKLFSSGIKLIILDEADAMTNDAQFALRRVIEKYTKNAR 152          
The following BLAST results are available for this feature:
BLAST of EWM24137.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105496|gb|EWM24137.1|4.145e-125100.00replication factor c subunit 5, partial [Nannochlo... [more]
gi|299116532|emb|CBN74720.1|2.542e-7076.64conserved unknown protein [Ectocarpus siliculosus][more]
gi|301114403|ref|XP_002998971.1|1.762e-6866.23replication factor C subunit 5 [Phytophthora infes... [more]
gi|675205019|ref|XP_008911394.1|2.312e-6866.23hypothetical protein PPTG_16313 [Phytophthora para... [more]
gi|1214702030|gb|OWZ14295.1|3.141e-6866.67Replication factor C subunit 5 [Phytophthora megak... [more]
gi|1173959934|gb|OQS06108.1|6.821e-6670.00replication factor C subunit 5 [Thraustotheca clav... [more]
gi|224009073|ref|XP_002293495.1|2.882e-6572.73replication factor C 36 kDa subunit [Thalassiosira... [more]
gi|1173946713|gb|OQR95218.1|3.085e-6562.99replication factor C subunit 5 [Achlya hypogyna][more]
gi|673024034|ref|XP_008865978.1|3.401e-6569.29hypothetical protein, variant [Aphanomyces invadan... [more]
gi|698808454|ref|XP_009837256.1|3.637e-6570.00hypothetical protein H257_11880 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6546rna6546Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications