rna6541, rna6541 (mRNA) Nannochloropsis gaditana

Overview
Namerna6541
Unique Namerna6541
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length576
Alignment locationCM002468.1:753919..755212 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100426g2.9608.mrna
Orig protein idgnl|cribi|Naga_100426g2.9608
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:753919..755212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100426g2gene6319Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6541rna6541-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24146.1cds6525Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6541 ID=rna6541|Name=rna6541|organism=Nannochloropsis gaditana|type=mRNA|length=576bp
ATGGGTGCCTTGCTCAAATGGGAGCAGATTTTCGTCCCCGTGATTTCCTT
CCTCACGATATTCCTGGTGCATGCACGGTACTTCAAGCTATGGCTCACCC
CCACGGCATGGGCCGACCCGCACGCGCGGGTGGACCTTCAGAGCGTGCAT
AACCTGCGCACCTTGTTTGTCGGCATTAGGACTCGCTGGGTTCTGGAGAA
CCATGGGCGCAAGAATATGGTCGTGCAGACCCTCAGGGACATGATCAGAA
CCTGCATGTCCTCGGCGACGGCCGCCATGGCCTTCATCTCCATATTCATC
GGGCTTTCCAAGAGCAACCTCCTCACCCTGAACCTCCTGGGCTGCCGCCC
TGAAGATGGGCCGGAATGCAATTCGTTCGATGCGCATTTACGCATGATCC
GCTTTGGCCTCTGCATCGGCAACTTCGTCGTCATCTTCTTCAATATGCTC
CTGGCCGCGCGTTTCGCATTGAACACTTCTTTCATGATCAATACGAAACG
TGGATGGGAAGCCACTCTCACAAATGCTGACAGTTCACGTGCTGGCTCGA
GCCTCTTGGCACTACGCACTGGGTAG
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protein sequence of rna6541

>rna6541-protein ID=rna6541-protein|Name=rna6541|organism=Nannochloropsis gaditana|type=polypeptide|length=384bp
MSFRWDSLRAHTGCLKLFDLNDLAVRASRLQLRHEQRQEQLQHAASDHPR
AYHFKRVTPSMLTARRNAVQAATAAAAAPPGAPPPPVALRPSVVTESAMA
AGYDTVSMEGSRRERAWFPGQGRTLVGENGLVVFVQEDAKVSVMRDRRQK
EDLQQAFPTADLTLVDTVWAQARSNFAAACTIMTSLRNNGHHTRKEGEGK
GGGEGGESGGLRTEDPRVWPSVEEVWGEGGKEGGAEKGWEHVHLSTRGEQ
WVLLGEGEGEEEEGGGEEGEEESMTYRSVLMSNLMEMEGGEEWPAAPPRR
TFPSLSSLGTRKKVRRREEDVMGGEEGGFLEEYELQKAVGVRTRRSMGRK
RLTETGKRRMAAKLQARRAPRAAGEEGEDGVEVW
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mRNA from alignment at CM002468.1:753919..755212+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6541 ID=rna6541|Name=rna6541|organism=Nannochloropsis gaditana|type=mRNA|length=1294bp|location=Sequence derived from alignment at CM002468.1:753919..755212+ (Nannochloropsis gaditana)
ATGAGCTTCCGATGGGATTCCTTGCGGGCGCACACGGGTTGTTTGAAACT
CTTCGATTTGAACGACCTGGCCGTCCGCGCCAGTCGGCTCCAATTACGGC
ACGAGCAGAGGCAAGAGCAACTACAACATGCCGCGTCCGATCACCCACGT
GCCTATCACTTCAAACGTGTCACTCCCTCCATGCTCACCGCCCGGAGAAA
CGCGGTCcaggcggcgacggcggcggcggcagctcctcccggcgcccctc
ccccccccgtagCCCTTCGCCCGTCTGTTGTCACTGAATCTGCAATGGCC
GCCGGGTACGATACTGTAAGCATGGAAGGTTCCAGAAGGGAGCGCGCATG
GTTTCCAGGGCAAGGACGTAccctggtgggggagaaCGGTCTGGTGGTTT
TCGTAcaggaggacgcgaaggtCAGCGTGATGCGAGATcggaggcagaag
gaggattTGCAACAGGTCGGTGATGAGTATGGACGGAAGGTTAAGGTTGT
CATCCTATGCgtttgcttttcttcccctcactTTTGTTTCAAGGGCCGCC
AGAGTTTTTTCTTACCACTTACCGCCCTTCTCTCGCgccctacccctccc
tcaggccttCCCCACAGCCGACCTGACCCTGGTGGATACAGTGTGGGCAC
AAGCGCGTTCCAATTTCGCGGCGGCTTGTACGATCATGACCTCGTTGCGA
AATAACGGGCATCATACCcggaaggaaggcgaggggaagggagggggcga
gggaggggaaagtggtGGTCTGCGCACGGAGGACCCGCGCGTGTGGccgt
cggtggaggaggtgtggggggagggcgggaaggaaggaggggctgagaaa
gggtgggagcaTGTGCACTTATCGACGCGGGGAGAGCAGTGGGTGCtttt
gggggaaggggagggggaggaggaggagggggggggggaggagggggagg
aggaatcgaTGACGTATCGGTCTGTGTTGATGAGTAACttgatggaaatg
gagggaggagaggagtggCCAGCCGCCCCTCCGCGACGGACATTCCCGTC
GCTCTCGTCCCTGGGGACCAGGaagaaagtgaggaggagggaggaggacg
tgatgggaggggaggagggtggattTTTGGAAGAATACGAGCTGCAGAAA
GCGGTCGGTGTGCGGACGCGAAGGAGCATGGGACGGAAGCGATTGACAGA
GaccgggaagaggaggatggcggcgAAACTACAGGCACGGCGGGCACCTC
gagcagcaggagaagaaggggaggatggggtggaggtgtggtga
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Coding sequence (CDS) from alignment at CM002468.1:753919..755212+

>rna6541 ID=rna6541|Name=rna6541|organism=Nannochloropsis gaditana|type=CDS|length=2310bp|location=Sequence derived from alignment at CM002468.1:753919..755212+ (Nannochloropsis gaditana)
ATGAGCTTCCGATGGGATTCCTTGCGGGCGCACACGGGTTGTTTGAAACT
CTTCGATTTGAACGACCTGGCCGTCCGCGCCAGTCGGCTCCAATTACGGC
ACGAGCAGAGGCAAGAGCAACTACAACATGCCGCGTCCGATCACCCACGT
GCCTATCACTTCAAACGTGTCACTCCCTCCATGCTCACCGCCCGGAGAAA
CGCGGTCcaggcggcgacggcggcggcggcagctcctcccggcgcccctc
ccccccccgtagCCCTTCGCCCGTCTGTTGTCACTGAATCTGCAATGGCC
GCCGGGTACGATACTGTAAGCATGGAAGGTTCCAGAAGGGAGCGCGCATG
GTTTCCAGGGCAAGGACGTAccctggtgggggagaaCGGTCTGGTGGTTT
TCGTAcaggaggacgcgaaggtCAGCGTGATGCGAGATcggaggcagaag
gaggattTGCAACAGgccttCCCCACAGCCGACCTGACCCTGGTGGATAC
AGTGTGGGCACAAGCGCGTTCCAATTTCGCGGCGGCTTGTACGATCATGA
CCTCGTTGCGAAATAACGGGCATCATACCcggaaggaaggcgaggggaag
ggagggggcgagggaggggaaagtggtGGTCTGCGCACGGAGGACCCGCG
CGTGTGGccgtcggtggaggaggtgtggggggagggcgggaaggaaggag
gggctgagaaagggtgggagcaTGTGCACTTATCGACGCGGGGAGAGCAG
TGGGTGCttttgggggaaggggagggggaggaggaggaggggggggggga
ggagggggaggaggaatcgaTGACGTATCGGTCTGTGTTGATGAGTAACt
tgatggaaatggagggaggagaggagtggCCAGCCGCCCCTCCGCGACGG
ACATTCCCGTCGCTCTCGTCCCTGGGGACCAGGaagaaagtgaggaggag
ggaggaggacgtgatgggaggggaggagggtggattTTTGGAAGAATACG
AGCTGCAGAAAGCGGTCGGTGTGCGGACGCGAAGGAGCATGGGACGGAAG
CGATTGACAGAGaccgggaagaggaggatggcggcgAAACTACAGGCACG
GCGGGCACCTCgagcagcaggagaagaaggggaggatggggtggaggtgt
ggtgaATGAGCTTCCGATGGGATTCCTTGCGGGCGCACACGGGTTGTTTG
AAACTCTTCGATTTGAACGACCTGGCCGTCCGCGCCAGTCGGCTCCAATT
ACGGCACGAGCAGAGGCAAGAGCAACTACAACATGCCGCGTCCGATCACC
CACGTGCCTATCACTTCAAACGTGTCACTCCCTCCATGCTCACCGCCCGG
AGAAACGCGGTCcaggcggcgacggcggcggcggcagctcctcccggcgc
ccctcccccccccgtagCCCTTCGCCCGTCTGTTGTCACTGAATCTGCAA
TGGCCGCCGGGTACGATACTGTAAGCATGGAAGGTTCCAGAAGGGAGCGC
GCATGGTTTCCAGGGCAAGGACGTAccctggtgggggagaaCGGTCTGGT
GGTTTTCGTAcaggaggacgcgaaggtCAGCGTGATGCGAGATcggaggc
agaaggaggattTGCAACAGgccttCCCCACAGCCGACCTGACCCTGGTG
GATACAGTGTGGGCACAAGCGCGTTCCAATTTCGCGGCGGCTTGTACGAT
CATGACCTCGTTGCGAAATAACGGGCATCATACCcggaaggaaggcgagg
ggaagggagggggcgagggaggggaaagtggtGGTCTGCGCACGGAGGAC
CCGCGCGTGTGGccgtcggtggaggaggtgtggggggagggcgggaagga
aggaggggctgagaaagggtgggagcaTGTGCACTTATCGACGCGGGGAG
AGCAGTGGGTGCttttgggggaaggggagggggaggaggaggaggggggg
ggggaggagggggaggaggaatcgaTGACGTATCGGTCTGTGTTGATGAG
TAACttgatggaaatggagggaggagaggagtggCCAGCCGCCCCTCCGC
GACGGACATTCCCGTCGCTCTCGTCCCTGGGGACCAGGaagaaagtgagg
aggagggaggaggacgtgatgggaggggaggagggtggattTTTGGAAGA
ATACGAGCTGCAGAAAGCGGTCGGTGTGCGGACGCGAAGGAGCATGGGAC
GGAAGCGATTGACAGAGaccgggaagaggaggatggcggcgAAACTACAG
GCACGGCGGGCACCTCgagcagcaggagaagaaggggaggatggggtgga
ggtgtggtga
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Synonyms
Publications