rna6540, rna6540 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6540
Unique Name	rna6540
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	681
Alignment location	CM002468.1:750880..752396 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100426g1.9611.mrna
Orig protein id	gnl\|cribi\|Naga_100426g1.9611
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:750880..752396 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100426g1	gene6318	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6540	rna6540-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24149.1	cds6524	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:750880..752396-
coding sequence from alignment at CM002468.1:750880..752396-

mRNA sequence

>rna6540 ID=rna6540|Name=rna6540|organism=Nannochloropsis gaditana|type=mRNA|length=681bp
TCTCAACATTCAGGCACGTTCTCATGCCTTTCACAGCGGCAGGACTCGAC
GCACGCCTTCTGTGCTGTGTCCGAGGGAAAGATTTTGACCTGGATTTACC
CTGTGGCCGCCTACCTTTCAAAACTAATGTCTTCTTTGCCTGTGATTCCA
CCTCTCCCTCCTCCTTTACCTCCTCCCCCGTGTCCCACGCTTCTTCAGGC
GGCCACCACCATGTCACTAGCCTTTCTGGGGACCGCAAGACCGGTGAACG
CCTCCAGAGGAGCGGAGCCCATGGTGATGGAGAGCTTTCCTCTGGCGCCC
GCCTGCCCGACTCTCTTCCCTGGACCCAGCACGCAGGCGCGAAGTAGAGG
GGGGAATGTGTCTGGCCTCGCCTATGCCCGCACGTCCACGAGCCCCACCT
GCGAAACAACCGGGCCCCTCCTCGGGTTTTTCATCACCCTCTCCCTTTCC
GCCTTGTGTTTCTGGCGCTTGGTCGTCTTTACCTCAGTGGCCTTGCGGTA
TCGCTGGTTTCCGCTTCCCCCACCCGGGCCTTACGCCGACACAGAACGCA
CCGTCCTACTCGCCGGACAAAGGGGCAGCTCCCGCCCTCCCTCCCGCCCT
CAGCCACCCCAGACGCTGTCACGGAAGCTTGTGTTCCACTTCGCCCTGTT
TTTGGCCGTGACGGTGGACCTGCCCAGGTAG

protein sequence of rna6540

>rna6540-protein ID=rna6540-protein|Name=rna6540|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MGALLKWEQIFVPVISFLTIFLVHARYFKLWLTPTAWADPHARVDLQSVH
NLRTLFVGIRTRWVLENHGRKNMVVQTLRDMIRTCMSSATAAMAFISIFI
GLSKSNLLTLNLLGCRPEDGPECNSFDAHLRMIRFGLCIGNFVVIFFNML
LAARFALNTSFMINTKRGWEATLTNADSSRAGSSLLALRTG

mRNA from alignment at CM002468.1:750880..752396-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6540 ID=rna6540|Name=rna6540|organism=Nannochloropsis gaditana|type=mRNA|length=1517bp|location=Sequence derived from alignment at CM002468.1:750880..752396- (Nannochloropsis gaditana)
ATGGGTGCCTTGCTCAAATGGGAGCAGATTTTCGTCCCCGTGATTTCCTT
CCTCACGATATTCCTGGTGCATGCACGGTACTTCAAGGTAACGCACGGGG
ACCGCGAACCGACGTGCCTCCCTTTCTTCTCCACGCTCACCCATCTTTCC
TCCCTTGGCCACTTTCCTGCGTCCTTCCTAGCTATGGCTCACCCCCACGG
CATGGGCCGACCCGCACGCGCGGGTGGACCTTCAGAGCGTGCATAACCTG
CGCACCTTGTTTGTCGGCATTGTAAGTACTCATCAGCACCTGGTTCGTTA
GTATTTATCACACCTGGTTCGTGACTACTGTATTTACCACAAGCTTGTCG
GGGGCCAAAAACGTAGGGCCGCTGGGGGGGGAGGCGGCTTTCCACCTCGG
CTCTGGCACGCTCTGACAATCCTCATCTATATAAATTTATGCCCTTACAT
ATTTATATACTTGTGCACCAACAGAGGACTCGCTGGGTTCTGGAGAACCA
TGGGCGCAAGAATATGGTCGTGCAGACCCTCAGGGACATGATCAGGTCCT
CCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTACTTTCCTCCCTGTCTCC
CTCCCTCCCTCCCTCCCTTCCACTTGTCAGATTCCTGTCCTCACTCGCCA
GCGTCTTAGTTTCCCTTCCCTCTCCATCACGAAAAAAGGCGCCCATGCGC
ATTGCCATGCTTTACAAGCCACGCCCCACTTCCTCCTCCTCCCCTCCCTC
CTCCCCTCCCTCCTCCACTCCCTCCTCCCCTCCCTCCTCCCCTCCCTCCT
CCCCTCCATCCTTGCCGCCCTCAGAACCTGCATGTCCTCGGCGACGGCCG
CCATGGCCTTCATCTCCATATTCATCGGGCTTTCCAAGAGCAACCTCCTC
ACCCTGAACCTCCTGGGCTGCCGCCCTGAAGATGGGCCGGAATGCAATTC
GTTCGATGCGCATTTACGCATGATCCGGTACCTCCTTCCCTTCCTCCCCT
CCCTCCCTCCCTCCCCTCCTTGCTCCCCTCCCTCCCCCCCTTCCTTCTTT
TCTCTTTCCCTTCACGTTCCTGCTCGCTCTCCAGACATGGCCATGTCATA
GTGAGCACCTCCCTCCCTCCCCCTCGCCCTCCCCCCCGCCCTCTCCGTCC
CCTGCCCTCCCTCCCGCCCTCCCCCTCCAGCTTTGGCCTCTGCATCGGCA
ACTTCGTCGTCATCTTCTTCAATATGCTCCTGGCCGCGCGTTTCGCATTG
AACACTTCTTTCATGATCAATACGAAACGTAAGCCTGCCTCCCCCCTTCC
CCCCTCCCTCCTTCGCGGCCTCTCCCCTTCCTGCCCTTGCCCTCCTCCAC
CACCGAGCCCCAACCGCATGGCATACCGCCCCTCCTTCCCTTTCTTCCTC
CCTCCCTCCCTCCCTCCCTTCTTCCCTCCCTCCCTCAGAGGTGGATGGGA
AGCCACTCTCACAAATGCTGACAGTTCACGTGCTGGCTCGAGCCTCTTGG
CACTACGCACTGGGTAG

Coding sequence (CDS) from alignment at CM002468.1:750880..752396-

>rna6540 ID=rna6540|Name=rna6540|organism=Nannochloropsis gaditana|type=CDS|length=3456bp|location=Sequence derived from alignment at CM002468.1:750880..752396- (Nannochloropsis gaditana)
GTGGATGGGAAGCCACTCTCACAAATGCTGACAGTTCACGTGCTGGCTCG
AGCCTCTTGGCACTACGCACTGGGTAGCTTTGGCCTCTGCATCGGCAACT
TCGTCGTCATCTTCTTCAATATGCTCCTGGCCGCGCGTTTCGCATTGAAC
ACTTCTTTCATGATCAATACGAAACAACCTGCATGTCCTCGGCGACGGCC
GCCATGGCCTTCATCTCCATATTCATCGGGCTTTCCAAGAGCAACCTCCT
CACCCTGAACCTCCTGGGCTGCCGCCCTGAAGATGGGCCGGAATGCAATT
CGTTCGATGCGCATTTACGCATGATCCGAGGACTCGCTGGGTTCTGGAGA
ACCATGGGCGCAAGAATATGGTCGTGCAGACCCTCAGGGACATGATCAGC
TATGGCTCACCCCCACGGCATGGGCCGACCCGCACGCGCGGGTGGACCTT
CAGAGCGTGCATAACCTGCGCACCTTGTTTGTCGGCATTATGGGTGCCTT
GCTCAAATGGGAGCAGATTTTCGTCCCCGTGATTTCCTTCCTCACGATAT
TCCTGGTGCATGCACGGTACTTCAAGGTGGATGGGAAGCCACTCTCACAA
ATGCTGACAGTTCACGTGCTGGCTCGAGCCTCTTGGCACTACGCACTGGG
TAGCTTTGGCCTCTGCATCGGCAACTTCGTCGTCATCTTCTTCAATATGC
TCCTGGCCGCGCGTTTCGCATTGAACACTTCTTTCATGATCAATACGAAA
CAACCTGCATGTCCTCGGCGACGGCCGCCATGGCCTTCATCTCCATATTC
ATCGGGCTTTCCAAGAGCAACCTCCTCACCCTGAACCTCCTGGGCTGCCG
CCCTGAAGATGGGCCGGAATGCAATTCGTTCGATGCGCATTTACGCATGA
TCCGAGGACTCGCTGGGTTCTGGAGAACCATGGGCGCAAGAATATGGTCG
TGCAGACCCTCAGGGACATGATCAGCTATGGCTCACCCCCACGGCATGGG
CCGACCCGCACGCGCGGGTGGACCTTCAGAGCGTGCATAACCTGCGCACC
TTGTTTGTCGGCATTATGGGTGCCTTGCTCAAATGGGAGCAGATTTTCGT
CCCCGTGATTTCCTTCCTCACGATATTCCTGGTGCATGCACGGTACTTCA
AGGTGGATGGGAAGCCACTCTCACAAATGCTGACAGTTCACGTGCTGGCT
CGAGCCTCTTGGCACTACGCACTGGGTAGCTTTGGCCTCTGCATCGGCAA
CTTCGTCGTCATCTTCTTCAATATGCTCCTGGCCGCGCGTTTCGCATTGA
ACACTTCTTTCATGATCAATACGAAACAACCTGCATGTCCTCGGCGACGG
CCGCCATGGCCTTCATCTCCATATTCATCGGGCTTTCCAAGAGCAACCTC
CTCACCCTGAACCTCCTGGGCTGCCGCCCTGAAGATGGGCCGGAATGCAA
TTCGTTCGATGCGCATTTACGCATGATCCGAGGACTCGCTGGGTTCTGGA
GAACCATGGGCGCAAGAATATGGTCGTGCAGACCCTCAGGGACATGATCA
GCTATGGCTCACCCCCACGGCATGGGCCGACCCGCACGCGCGGGTGGACC
TTCAGAGCGTGCATAACCTGCGCACCTTGTTTGTCGGCATTATGGGTGCC
TTGCTCAAATGGGAGCAGATTTTCGTCCCCGTGATTTCCTTCCTCACGAT
ATTCCTGGTGCATGCACGGTACTTCAAGGTGGATGGGAAGCCACTCTCAC
AAATGCTGACAGTTCACGTGCTGGCTCGAGCCTCTTGGCACTACGCACTG
GGTAGCTTTGGCCTCTGCATCGGCAACTTCGTCGTCATCTTCTTCAATAT
GCTCCTGGCCGCGCGTTTCGCATTGAACACTTCTTTCATGATCAATACGA
AACAACCTGCATGTCCTCGGCGACGGCCGCCATGGCCTTCATCTCCATAT
TCATCGGGCTTTCCAAGAGCAACCTCCTCACCCTGAACCTCCTGGGCTGC
CGCCCTGAAGATGGGCCGGAATGCAATTCGTTCGATGCGCATTTACGCAT
GATCCGAGGACTCGCTGGGTTCTGGAGAACCATGGGCGCAAGAATATGGT
CGTGCAGACCCTCAGGGACATGATCAGCTATGGCTCACCCCCACGGCATG
GGCCGACCCGCACGCGCGGGTGGACCTTCAGAGCGTGCATAACCTGCGCA
CCTTGTTTGTCGGCATTATGGGTGCCTTGCTCAAATGGGAGCAGATTTTC
GTCCCCGTGATTTCCTTCCTCACGATATTCCTGGTGCATGCACGGTACTT
CAAGGTGGATGGGAAGCCACTCTCACAAATGCTGACAGTTCACGTGCTGG
CTCGAGCCTCTTGGCACTACGCACTGGGTAGCTTTGGCCTCTGCATCGGC
AACTTCGTCGTCATCTTCTTCAATATGCTCCTGGCCGCGCGTTTCGCATT
GAACACTTCTTTCATGATCAATACGAAACAACCTGCATGTCCTCGGCGAC
GGCCGCCATGGCCTTCATCTCCATATTCATCGGGCTTTCCAAGAGCAACC
TCCTCACCCTGAACCTCCTGGGCTGCCGCCCTGAAGATGGGCCGGAATGC
AATTCGTTCGATGCGCATTTACGCATGATCCGAGGACTCGCTGGGTTCTG
GAGAACCATGGGCGCAAGAATATGGTCGTGCAGACCCTCAGGGACATGAT
CAGCTATGGCTCACCCCCACGGCATGGGCCGACCCGCACGCGCGGGTGGA
CCTTCAGAGCGTGCATAACCTGCGCACCTTGTTTGTCGGCATTATGGGTG
CCTTGCTCAAATGGGAGCAGATTTTCGTCCCCGTGATTTCCTTCCTCACG
ATATTCCTGGTGCATGCACGGTACTTCAAGGTGGATGGGAAGCCACTCTC
ACAAATGCTGACAGTTCACGTGCTGGCTCGAGCCTCTTGGCACTACGCAC
TGGGTAGCTTTGGCCTCTGCATCGGCAACTTCGTCGTCATCTTCTTCAAT
ATGCTCCTGGCCGCGCGTTTCGCATTGAACACTTCTTTCATGATCAATAC
GAAACAACCTGCATGTCCTCGGCGACGGCCGCCATGGCCTTCATCTCCAT
ATTCATCGGGCTTTCCAAGAGCAACCTCCTCACCCTGAACCTCCTGGGCT
GCCGCCCTGAAGATGGGCCGGAATGCAATTCGTTCGATGCGCATTTACGC
ATGATCCGAGGACTCGCTGGGTTCTGGAGAACCATGGGCGCAAGAATATG
GTCGTGCAGACCCTCAGGGACATGATCAGCTATGGCTCACCCCCACGGCA
TGGGCCGACCCGCACGCGCGGGTGGACCTTCAGAGCGTGCATAACCTGCG
CACCTTGTTTGTCGGCATTATGGGTGCCTTGCTCAAATGGGAGCAGATTT
TCGTCCCCGTGATTTCCTTCCTCACGATATTCCTGGTGCATGCACGGTAC
TTCAAG

Synonyms

Publications