rna6538, rna6538 (mRNA) Nannochloropsis gaditana

Overview
Namerna6538
Unique Namerna6538
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length372
Alignment locationCM002468.1:747857..748609 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101795g1.4209.mrna
Orig protein idgnl|cribi|Naga_101795g1.4209
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:747857..748609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101795g1gene6316Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6538rna6538-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24151.1cds6522Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6538 ID=rna6538|Name=rna6538|organism=Nannochloropsis gaditana|type=mRNA|length=372bp
CTGACATCTTTTTTGGACGACACGGAGGAAGAGGAAGAGGAAGAGGAGGA
GGAGCGCAGACCTTCTGCCCCCTCCCCCCCTCCCTCCTGCCGTCCCTCCC
TCCCTCACCCCGACACCCACACAGCCCCTGACGATGGAATCGCAGCCATC
CAGGAGGGAAAAGAAGGGGGGAGGAGGGAGGGAGGGAAGGAGGGAGGGAG
GGAGGGAGGGAAGAACGGCAAGGATGTCACTGCTCCTGTGCAACCGGCGT
ACCTTGACCTGGAGACTTTCGCTTCTGCCGAGGCTCTGGAGGTAAAGGAG
GGTGGAGGGAGGGACAAGAGGGAGCTTTGTCCATGAAGCAGCAATCAAGC
TGCCATGGCGAGCGTGTTTTCG
back to top

protein sequence of rna6538

>rna6538-protein ID=rna6538-protein|Name=rna6538|organism=Nannochloropsis gaditana|type=polypeptide|length=180bp
MSQWNNPQSSQEEVTREERKRLAHGWDGGQAKEEREENKEERKEKGLDKE
GTIEDRDQEQQFLVSVPWSHKTRCITLSVPDKKGGMAAVTAAEIVEAVLG
MDNLMTEAPRIKSGTQGVDVAPMPTSAMLIECGGKCYRHHETLPLCFPSL
STSSSSSSSCSSFLMAPVLRLHSPSWGLMG
back to top

mRNA from alignment at CM002468.1:747857..748609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6538 ID=rna6538|Name=rna6538|organism=Nannochloropsis gaditana|type=mRNA|length=753bp|location=Sequence derived from alignment at CM002468.1:747857..748609- (Nannochloropsis gaditana)
TGAACCCTTTACGGGATGACAGCCTCGTTCACGCGCGAGCGCGCTTTCGA
CGATGAGCCAGTGGAATAACCCGCAGTCTTCGCAAGAGGAGGTGACAAGG
GAAGAAAGGAAGCGACTGGCGCATGGGTGGGATGGAGGGCAGGCAAAAGA
GGAGAGGGAGGAAAACAAGGAGGAAAGAAAAGAGAAAGGACTAGACAAGG
AAGGAACCATCGAGGACAGGGACCAAGAACAGCAGTTTTTGGTGTCGGTG
CCCTGGTCGCACAAGACACGTTGCATCACGCTTTCTGTGCCGGACAAGAA
AGGAGGCATGGCTGCGGTCACTGCGGCGGAGATTGTGGAGGCTGTCCTGG
GTATGGATAACCTGATGACGGAGGCTCCGCGAATAAAGAGTGGAACACAG
GGGGTCGATGTGGCGCCCATGCCGACGTCTGCCATGTTGATAGAATGCGG
TGGAAAATGGTGCGTGTCCTCCTTCCCTCCCTCCGCCCCTTCCTCCTTCC
CTCCCTCCGCCCCCTCCTCCCTTTTCCTCCTCCCCTTCCTCTCACCCCCG
CTCCCCGTGTCCTCCCGCCCAATTGCGCCCTTCTCCCTCTAACATTTGAT
TCCTGACCTCACTACCCAGCTACCGACACCACGAAACGCTTCCTCTTTGC
TTTCCATCCCTCTCGACCTCCTCCTCCTCCTCCTCCTCTTGCTCCTCCTT
CCTTATGGCTCCCGTTCTTCGCCTTCATTCACCCTCATGGGGCCTGATGG
GGG
back to top

Coding sequence (CDS) from alignment at CM002468.1:747857..748609-

>rna6538 ID=rna6538|Name=rna6538|organism=Nannochloropsis gaditana|type=CDS|length=1082bp|location=Sequence derived from alignment at CM002468.1:747857..748609- (Nannochloropsis gaditana)
CTACCGACACCACGAAACGCTTCCTCTTTGCTTTCCATCCCTCTCGACCT
CCTCCTCCTCCTCCTCCTCTTGCTCCTCCTTCCTTATGGCTCCCGTTCTT
CGCCTTCATTCACCCTCATGGGGCCTGATGGGGGATGAGCCAGTGGAATA
ACCCGCAGTCTTCGCAAGAGGAGGTGACAAGGGAAGAAAGGAAGCGACTG
GCGCATGGGTGGGATGGAGGGCAGGCAAAAGAGGAGAGGGAGGAAAACAA
GGAGGAAAGAAAAGAGAAAGGACTAGACAAGGAAGGAACCATCGAGGACA
GGGACCAAGAACAGCAGTTTTTGGTGTCGGTGCCCTGGTCGCACAAGACA
CGTTGCATCACGCTTTCTGTGCCGGACAAGAAAGGAGGCATGGCTGCGGT
CACTGCGGCGGAGATTGTGGAGGCTGTCCTGGGTATGGATAACCTGATGA
CGGAGGCTCCGCGAATAAAGAGTGGAACACAGGGGGTCGATGTGGCGCCC
ATGCCGACGTCTGCCATGTTGATAGAATGCGGTGGAAAATGCTACCGACA
CCACGAAACGCTTCCTCTTTGCTTTCCATCCCTCTCGACCTCCTCCTCCT
CCTCCTCCTCTTGCTCCTCCTTCCTTATGGCTCCCGTTCTTCGCCTTCAT
TCACCCTCATGGGGCCTGATGGGGGATGAGCCAGTGGAATAACCCGCAGT
CTTCGCAAGAGGAGGTGACAAGGGAAGAAAGGAAGCGACTGGCGCATGGG
TGGGATGGAGGGCAGGCAAAAGAGGAGAGGGAGGAAAACAAGGAGGAAAG
AAAAGAGAAAGGACTAGACAAGGAAGGAACCATCGAGGACAGGGACCAAG
AACAGCAGTTTTTGGTGTCGGTGCCCTGGTCGCACAAGACACGTTGCATC
ACGCTTTCTGTGCCGGACAAGAAAGGAGGCATGGCTGCGGTCACTGCGGC
GGAGATTGTGGAGGCTGTCCTGGGTATGGATAACCTGATGACGGAGGCTC
CGCGAATAAAGAGTGGAACACAGGGGGTCGATGTGGCGCCCATGCCGACG
TCTGCCATGTTGATAGAATGCGGTGGAAAATG
back to top
Synonyms
Publications