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Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100407g3.7970.mrna |
Orig protein id | gnl|cribi|Naga_100407g3.7970 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002468.1 | supercontig | CM002468.1:740697..744785 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6534 ID=rna6534|Name=rna6534|organism=Nannochloropsis gaditana|type=mRNA|length=1097bp GCAAACGCTACTTTGCTGGCGTGGTGCCGTTCAAGCAACGATTCACGTAA GAACTCGTACCCATTACTCATTGATCCTCTGACTCGTAAAACGCCTACAA AGGACTTTAAGCATGCTTTGTAGCGGCTCAGCACTGCGATACAACACCAC GGCTTTATTGTTGCGGCGCGGCGCGGCGCGTGCAGCTCAGCAAAACTTGA ATGGAAGAGCGCGCGCCTACACAAGTGTCAGCACGTTGCCCGAGGAATAT CGTTCCATTCGCGACATGGTCCGTTCGTTTGCTGACACAGAGCTGGTTCC TAATGCTGCTCAATGGGACAGGGAGCATGTCTTTCCCGCCGATCAGGTGA AAGCGATCGGGGAGATGGGCTTGATGGGGGTGTCAGTGCCCGAGGAGTAT GGCGGCGCTGGGATGGACTACATGGCGTACGCAATCGCCATCGAAGAGCT CAGCCGTGGCTGTGCTTCCACAGGGGTGATCGCCAGTGTGAACAATTCCC TGTACTGCGGGCCCGTCGCGCAGTTTGGGACGGATGAGCAAAAAGACACA TGGCTGACGCCATACGCCTCCGGCTCTCAAATTGGATGCTTCGGTCTGTC GGAACCCGGTAACGGCAGCGACGCCGGCGCCGCGAGCACGACCGCGGTGT TGGAGGGGGAGGAGTTCGTCTTGAACGGGAGTAAGGCCTGGATCACCAAT GCCCACGAGGCGAGTGCAGCCATCGTCTTTGCCACCACGGACAAAAGCTT GAAGCATAAAGGTAGGCTCATGCGTGTCTCGGTGATTTTTGGCTTATCTT GCCGCCTGTGAGCTCGGCTTTTGGAGTTCCCCCCCCCTTTTTTTTCTCCC GATTTTTTTCCTTGCCATGTAGTTTTTTCTTTTGCGATACCTTTCATCAT TCGTTCGCGTTGTAATACGAGGAAGAGTGAGAGGGAAGGAGGGGGGAGGG AAGGAGGGAGGGGAGGAGGGAGGGAAAGCAGGTGGAAGAGCCTGCTCATT CGAGTCCTTATCCTGACTGAGGCCGCTATCGACCAGCACGGCTTTCCCCT TTTGATCGGCATTCGCGCAATTTTTCTTTTCCCTGCTGGTGTCCTGC back to topprotein sequence of rna6534 >rna6534-protein ID=rna6534-protein|Name=rna6534|organism=Nannochloropsis gaditana|type=polypeptide|length=1362bp MKGGGPGRGWAGSQGGWVGGRGGQRVEGEHSDSLGHGTLGVGGGPEGLPV TGRLQQQPHESPPSYPQTALHKARALGRQPYSPPMETPDALWPSIPSSSD FRSGTGPGIHTLGGESPGPSLVWPSGGSERPRSRLEEGPGHDEASRASPY GGYGAGELGTPGRGVGNGLGSLGPNTSDGSTVLPESRQAPQHIHLNGGHS GGNNGFLPPALRHFSMPQEGVPPHVHATPTLGPSARPVDARHVSSSSSGA SPFLPASHVQPVVEWIAQFIQQKGGMITAANLGSALARLHPNFYALLKAS HGGLTTFLSEYSHRFRFANDPPFNHIFLQEEGGEEGGRTAAQMPRMPSAP ASSPWTLQGSMASSFSTGPKRGSGGDLGGEVAPGGRYGGEAPASVHPYPL QSLQPPASARSSHPSQGVGVGGKDGALSDETLWRSFMSSPGLSAASSSPA LPPRPGQGVMQRSLSGGAMPVFLSPNHPSFLPQPLTLHEQPQQAHHSAGM LGGIAGLGPGKVVSSPSLHLLHQQQPPPSGLTYLASTQQQHHQSAALPPP AGEPRFSGATLLPAHGSQARAMSKLGREGGCPPDQVLETDVVRATGEILR NAANYALKAVELANTLRARLGTKVLAKVRERYGGLLFLLERHPSFFRVDR IPKNDCVTLLQGGLMMASAAAPQQQHQVLEGAMPARPLGGGTPLMGGRAM GGNDGARGGTMSASAYTQTIQQLQQQVALAREKEAFAAAKMRALSQQQHQ QQHHQQQQQQRQQQPPHQQLQQQQHQQPPHQQQQQQQQQQQPPHHHQQQQ QQQQQQQQQQQQQQQQQQQQPPHHHHQQQQQQPPPPQQQQHQQQHEQQQQ PLDQQQYHRQHNQQHIQQQQQQQHQQQSQPQSFQQHQQQYQQQQHQQQWQ QHAQQLPSNSLSSPFLPSSMENIQLMPEDRQVHEGREGGAEGGRGPTGDA SLQRRHSWNSLMGMRQDENGDGRGALVVDGVGGGPPTGRPCLGPASASSA SPPLLPPSLPLATACGAGNGEGGREGGTVGRNVFLPSAAHGAVTLAPFPA EPGVGDKQSGASPGDGIVVAQHAWRPQEVFLREGDGTALQGEKSGGVEES VGNGSGAVSPSSSVGATASRGPSRNNSDVNIWAMNNASCGALGSGGGRGE EGKEDGAMRTLAAHPSDDSFLLFGRGTGGLDVGGQIWVGDGTRSKEEKAH MPSGWGGGTGLEATGLARVGPTSSFSPSSSSSFLRAHPLQAASHSSSSDS LSSHCSGSGGGGGRTLRAATLLGPYPLPRSLPHRLPSDGALRIRRDGHGG AIPWRGRKVRGPANLDQQPFCPHPSLAVGTVAGCRLRDRGGGRTPGRGWH HHRQQTPGPFET back to topmRNA from alignment at CM002468.1:740697..744785+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6534 ID=rna6534|Name=rna6534|organism=Nannochloropsis gaditana|type=mRNA|length=4089bp|location=Sequence derived from alignment at CM002468.1:740697..744785+ (Nannochloropsis gaditana) ATGAAGGGCGGAGGTCCGGGGCGGGGATGGGCTGGTAGTCAGGGAGGATG
ggtaggaggaaggggcggccagcgagtggaaggggagcacAGCGACAGCC
TTGGCCATGGCACCCTAGgtgtcgggggagggcctgaaggATTGCCTGTT
ACCGGtaggctgcagcagcagccgcacgAGTCGCCACCGTCTTACCCACA
GACTGCACTCCACAAGGCGCGTGCCCTCGGGCGGCAGCCATATTCACCGC
CTATGGAGACCCCAGACGCCCTGTGGCCTTCGATTCCATCCAGCAGCGAT
TTCCGTTCGGGCACCGGCCCTGGCATTCACACCCTGGGAGGGGAATCGCC
CGGCCCTAGTCTCGTGTGGCCGTCGGGAGGATCGGAACGGCCGCGCTCCC
gactggaggaagggccaggACACGACGAAGCGAGCAGGGCCTCCCCCTAT
GGAGGCTACGGAGCAGGCGAATTGGGGACGCCGGGTCGGGGCGTGGGTAA
TGGCTTGGGCAGCCTGGGCCCCAACACCAGCGACGGCTCAACCGTCCTGC
CCGAGTCTCGTCAGGCCCCGCAGCACATCCATTTAAATGGGGGCCATAGC
GGGGGAAATAATGGGTTCCTGCCGCCTGCCTTGCGCCATTTCTCCATGCC
CCAAGAAGGAGTGCCCCCCCATGTCCACGCCACGCCCACGCTCGGGCCGT
CGGCCCGCCCTGTTGACGCTCGGcatgtctcctcttcctcctccggtgct
tcccctttcctacccgcctcccacgtccaGCCGGTGGTAGAGTGGATCGC
GCAATTTATTCAACAGAAAGGCGGGATGATCACGGCGGCGAATTTGGGTT
CGGCACTGGCCCGCCTGCACCCGAATTTCTACGCACTGTTGAAAGCCTCG
CATGGGGGACTGACGACCTTTTTGTCGGAGTACTCGCATCGTTTCAGGTT
TGCGAATGACCCGCCTTTCAACCACATCTTTttgcaagaagagggagggg
aggaggggggtcggACGGCCGCGCAGATGCCCCGTATGCCCTCGGCGCCT
GCCTCGAGCCCCTGGACCCTCCAAGGATCGATGGCCTCCTCGTTTTCGAC
GGGTCCCAAGAGAGGATCTGGAGGggacctgggaggggaggtggcccCCG
GAGGACGAtacgggggggaggcgcctgCCTCCGTCCATCCCTATCCGCTA
CAGTCGCTGCAACCGCCAGCATCGGCACGGTCGTCCCATCCATCTCAGGG
CGTCGGAgtcggagggaaggatggagcgcTCAGTGATGAGACGCTCTGGC
GCTCTTTcatgtcctcccccgggctctccgccgcttcctcgtcccctgcT
CTGCCCCCCCGACCAGGGCAAGGGGTAATGCAGCGCTCTCTTTCCGGGGG
TGCcatgcccgtcttcctctcgcccaaccacccgtccttcctcccccagc
ccctcaCCCTGCACGAGCAACCACAGCAAGCTCACCACTCGGCGGGCATG
CTGGGTGGGATCGCGGGTTTGGGTCCGGGGAAAGtagtttcctccccctc
cctccacctcctccaccagcagcagccaccaCCCTCTGGACTGACCTACC
TTGCCTCgacacagcagcagcaccaccagTCTGCcgcgctcccgccgccg
gcgGGCGAGCCACGTTTCTCGGGCGCCACATTGCTCCCTGCCCATGGAAG
CCAGGCTCGTGCCATGTCcaagctggggagggagggagggtgtccCCCGG
ACCAAGTCTTGGAAACCGACGTGGTACGGGCCACTGGCGAAATCCTTCGG
AACGCGGCCAATTATGCCTTGAAAGCGGTGGAGCTGGCGAATACTTTGCG
AGCCCGTTTGGGAACGAAAGTGCTGGCGAAGGTCCGGGAACGGTATGGAG
GCTTGCTGTTCCTCTTGGAACGGCAcccttcttttttccgtGTCGACCGG
ATTCCTAAAAATGACTGCGTGACCTTACTCCAAGGTGGGTTGATGATGGC
GTCGGCGGCCgcgccgcagcagcagcaccaggtGCTGGAAGGGGCCATGC
CAGCCAGAcccttgggggggggcacgcccctgatggggggaagagcaatg
ggggggaatgacggggcacgggggggaaCCATGTCGGCATCCGCCTATAC
CCAAACGAtccagcagctccagcaGCAGGTGGCTCTGgccagggagaagg
aggcgtttGCAGCAGCGAAGATGCGTGCGCTCTCtcaacaacaacaccaa
caacaacatcatcaacaacaacagcaacagcggcaacaacaaccacctcA
TCAACAActacagcagcaacagcatcaACAACCACCTcatcagcaacaac
aacaacaacaacagcaacaacaaccacctcatcatcatcaacaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaca
acaacaacaaccacctcatcatcatcatcaacagcaacaacaacaaccac
caccaccacaacagcaacaacaccaacaacaacacgagcaacagcagcaa
ccaCTAGACCAACAACAATATCATCGGCAACATAATCAGCAACATattca
gcagcaacaacaacaacaacatcaacaacAATCACAACCACAATCCTTTC
AacagcatcagcagcaatatcaacagcaacagcaccagcaacagTGGCAG
CAACATGCTCAGCAATTGCCATCGAAtagtctctcctcccccttcctgcc
atCTTCCATGGAGAATATTCAATTGATGCCAGAGGACCGGCAAGTccatg
aagggagggagggaggggccgagggagggaggggtccgaCCGGGGATGCC
TCCCTGCAACGGCGACACTCATGGAACAGTCTGATGGGCATGCGACAGGA
CGAAAATGGCGACGGGAGAGGGGCTTTGGTAGTCGACGGGGTCGGTGGAG
GGCCGCCAACAGGGCGTCCTTGCCTGGGgcccgcctctgcctcgtccgCG
TCTCCGCCCttgttgcctccctccctgcccctggcGACCGCCTGTGGGGC
TGgaaatggggagggagggagggagggtggaacgGTCGGCAGGAACGTGT
TCCTGCCTTCTGCGGCGCACGGGGCGGTGACACTCGCCCCATTCCCAGCG
GAACCGGGCGTTGGGGACAAGCAAAGCGGGGCTAGCCCGGGTGATGGGAT
TGTGGTGGCACAGCATGCCTGGCGTCCGCAAGAAGTGTTCTTACGGGAAG
GTGACGGCACGGCACTCCAAGGAGAAAAGTCcggtggggtggaggaaagc
gtcgGTAACGGCTCTGGAGCCGtttcaccctcttcttcggtTGGGGCGAC
CGCCAGTCGCGGTCCTTCGAGGAACAATAGTGACGTGAATATTTGGGCCA
TGAACAATGCGAGTTGTGGTGCGTTAGGctccgggggagggcggggcgag
gaagggaaagaggacggggcgaTGCGAACGCTGGCTGCGCACCCGTCGGA
tgactccttcctcctcttcggccgAGGAACCGGGGGGTTGGACGTAGGGG
GGCAGATCTGGGTGGGTGACGGCACGCgctcgaaggaggaaaaggcccAC
ATGCCGTccggatgggggggaggaacaggGTTGGAGGCCACGGGGCTTGC
ACGCGTGGGACCGACGTCgagcttctccccctcctcctcctcctccttcc
tccgtgcccatcccctccaagccgccagccacagcagcagcagcgacagc
ctGAGCAGCCATTGCagtgggagcgggggggggggcgggaggacttTGCG
GGCAGCAACCCTCCTTGGGCCttaccctctcccccgcagcctcccccatc
gcctcccctccgacgGCGCTCTCCGCATTAGGCGCGACGGGCACGGCGGG
GCTATcccatggagggggaggaaggtgcgcGGTCCTGCAAATCTTGACCA
ACAACCATTTTGTCCCCACCCAAGCCTGGCCGTTGGAACCGTTGCGGGAT
GCCGGCTACGTGACCGTGGTGGCGGAAGAACTCCGGGCCGTGGGTGGCAC
CACCACCGTCAGCAAACTCCGGGGCCTTTTGAAACATAA back to topCoding sequence (CDS) from alignment at CM002468.1:740697..744785+ >rna6534 ID=rna6534|Name=rna6534|organism=Nannochloropsis gaditana|type=CDS|length=4089bp|location=Sequence derived from alignment at CM002468.1:740697..744785+ (Nannochloropsis gaditana) ATGAAGGGCGGAGGTCCGGGGCGGGGATGGGCTGGTAGTCAGGGAGGATG ggtaggaggaaggggcggccagcgagtggaaggggagcacAGCGACAGCC TTGGCCATGGCACCCTAGgtgtcgggggagggcctgaaggATTGCCTGTT ACCGGtaggctgcagcagcagccgcacgAGTCGCCACCGTCTTACCCACA GACTGCACTCCACAAGGCGCGTGCCCTCGGGCGGCAGCCATATTCACCGC CTATGGAGACCCCAGACGCCCTGTGGCCTTCGATTCCATCCAGCAGCGAT TTCCGTTCGGGCACCGGCCCTGGCATTCACACCCTGGGAGGGGAATCGCC CGGCCCTAGTCTCGTGTGGCCGTCGGGAGGATCGGAACGGCCGCGCTCCC gactggaggaagggccaggACACGACGAAGCGAGCAGGGCCTCCCCCTAT GGAGGCTACGGAGCAGGCGAATTGGGGACGCCGGGTCGGGGCGTGGGTAA TGGCTTGGGCAGCCTGGGCCCCAACACCAGCGACGGCTCAACCGTCCTGC CCGAGTCTCGTCAGGCCCCGCAGCACATCCATTTAAATGGGGGCCATAGC GGGGGAAATAATGGGTTCCTGCCGCCTGCCTTGCGCCATTTCTCCATGCC CCAAGAAGGAGTGCCCCCCCATGTCCACGCCACGCCCACGCTCGGGCCGT CGGCCCGCCCTGTTGACGCTCGGcatgtctcctcttcctcctccggtgct tcccctttcctacccgcctcccacgtccaGCCGGTGGTAGAGTGGATCGC GCAATTTATTCAACAGAAAGGCGGGATGATCACGGCGGCGAATTTGGGTT CGGCACTGGCCCGCCTGCACCCGAATTTCTACGCACTGTTGAAAGCCTCG CATGGGGGACTGACGACCTTTTTGTCGGAGTACTCGCATCGTTTCAGGTT TGCGAATGACCCGCCTTTCAACCACATCTTTttgcaagaagagggagggg aggaggggggtcggACGGCCGCGCAGATGCCCCGTATGCCCTCGGCGCCT GCCTCGAGCCCCTGGACCCTCCAAGGATCGATGGCCTCCTCGTTTTCGAC GGGTCCCAAGAGAGGATCTGGAGGggacctgggaggggaggtggcccCCG GAGGACGAtacgggggggaggcgcctgCCTCCGTCCATCCCTATCCGCTA CAGTCGCTGCAACCGCCAGCATCGGCACGGTCGTCCCATCCATCTCAGGG CGTCGGAgtcggagggaaggatggagcgcTCAGTGATGAGACGCTCTGGC GCTCTTTcatgtcctcccccgggctctccgccgcttcctcgtcccctgcT CTGCCCCCCCGACCAGGGCAAGGGGTAATGCAGCGCTCTCTTTCCGGGGG TGCcatgcccgtcttcctctcgcccaaccacccgtccttcctcccccagc ccctcaCCCTGCACGAGCAACCACAGCAAGCTCACCACTCGGCGGGCATG CTGGGTGGGATCGCGGGTTTGGGTCCGGGGAAAGtagtttcctccccctc cctccacctcctccaccagcagcagccaccaCCCTCTGGACTGACCTACC TTGCCTCgacacagcagcagcaccaccagTCTGCcgcgctcccgccgccg gcgGGCGAGCCACGTTTCTCGGGCGCCACATTGCTCCCTGCCCATGGAAG CCAGGCTCGTGCCATGTCcaagctggggagggagggagggtgtccCCCGG ACCAAGTCTTGGAAACCGACGTGGTACGGGCCACTGGCGAAATCCTTCGG AACGCGGCCAATTATGCCTTGAAAGCGGTGGAGCTGGCGAATACTTTGCG AGCCCGTTTGGGAACGAAAGTGCTGGCGAAGGTCCGGGAACGGTATGGAG GCTTGCTGTTCCTCTTGGAACGGCAcccttcttttttccgtGTCGACCGG ATTCCTAAAAATGACTGCGTGACCTTACTCCAAGGTGGGTTGATGATGGC GTCGGCGGCCgcgccgcagcagcagcaccaggtGCTGGAAGGGGCCATGC CAGCCAGAcccttgggggggggcacgcccctgatggggggaagagcaatg ggggggaatgacggggcacgggggggaaCCATGTCGGCATCCGCCTATAC CCAAACGAtccagcagctccagcaGCAGGTGGCTCTGgccagggagaagg aggcgtttGCAGCAGCGAAGATGCGTGCGCTCTCtcaacaacaacaccaa caacaacatcatcaacaacaacagcaacagcggcaacaacaaccacctcA TCAACAActacagcagcaacagcatcaACAACCACCTcatcagcaacaac aacaacaacaacagcaacaacaaccacctcatcatcatcaacaacaacaa caacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaca acaacaacaaccacctcatcatcatcatcaacagcaacaacaacaaccac caccaccacaacagcaacaacaccaacaacaacacgagcaacagcagcaa ccaCTAGACCAACAACAATATCATCGGCAACATAATCAGCAACATattca gcagcaacaacaacaacaacatcaacaacAATCACAACCACAATCCTTTC AacagcatcagcagcaatatcaacagcaacagcaccagcaacagTGGCAG CAACATGCTCAGCAATTGCCATCGAAtagtctctcctcccccttcctgcc atCTTCCATGGAGAATATTCAATTGATGCCAGAGGACCGGCAAGTccatg aagggagggagggaggggccgagggagggaggggtccgaCCGGGGATGCC TCCCTGCAACGGCGACACTCATGGAACAGTCTGATGGGCATGCGACAGGA CGAAAATGGCGACGGGAGAGGGGCTTTGGTAGTCGACGGGGTCGGTGGAG GGCCGCCAACAGGGCGTCCTTGCCTGGGgcccgcctctgcctcgtccgCG TCTCCGCCCttgttgcctccctccctgcccctggcGACCGCCTGTGGGGC TGgaaatggggagggagggagggagggtggaacgGTCGGCAGGAACGTGT TCCTGCCTTCTGCGGCGCACGGGGCGGTGACACTCGCCCCATTCCCAGCG GAACCGGGCGTTGGGGACAAGCAAAGCGGGGCTAGCCCGGGTGATGGGAT TGTGGTGGCACAGCATGCCTGGCGTCCGCAAGAAGTGTTCTTACGGGAAG GTGACGGCACGGCACTCCAAGGAGAAAAGTCcggtggggtggaggaaagc gtcgGTAACGGCTCTGGAGCCGtttcaccctcttcttcggtTGGGGCGAC CGCCAGTCGCGGTCCTTCGAGGAACAATAGTGACGTGAATATTTGGGCCA TGAACAATGCGAGTTGTGGTGCGTTAGGctccgggggagggcggggcgag gaagggaaagaggacggggcgaTGCGAACGCTGGCTGCGCACCCGTCGGA tgactccttcctcctcttcggccgAGGAACCGGGGGGTTGGACGTAGGGG GGCAGATCTGGGTGGGTGACGGCACGCgctcgaaggaggaaaaggcccAC ATGCCGTccggatgggggggaggaacaggGTTGGAGGCCACGGGGCTTGC ACGCGTGGGACCGACGTCgagcttctccccctcctcctcctcctccttcc tccgtgcccatcccctccaagccgccagccacagcagcagcagcgacagc ctGAGCAGCCATTGCagtgggagcgggggggggggcgggaggacttTGCG GGCAGCAACCCTCCTTGGGCCttaccctctcccccgcagcctcccccatc gcctcccctccgacgGCGCTCTCCGCATTAGGCGCGACGGGCACGGCGGG GCTATcccatggagggggaggaaggtgcgcGGTCCTGCAAATCTTGACCA ACAACCATTTTGTCCCCACCCAAGCCTGGCCGTTGGAACCGTTGCGGGAT GCCGGCTACGTGACCGTGGTGGCGGAAGAACTCCGGGCCGTGGGTGGCAC CACCACCGTCAGCAAACTCCGGGGCCTTTTGAAACATAA back to top
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