rna6534, rna6534 (mRNA) Nannochloropsis gaditana

Overview
Namerna6534
Unique Namerna6534
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1097
Alignment locationCM002468.1:740697..744785 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100407g3.7970.mrna
Orig protein idgnl|cribi|Naga_100407g3.7970
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:740697..744785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100407g3gene6312Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6534rna6534-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24156.1cds6518Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6534 ID=rna6534|Name=rna6534|organism=Nannochloropsis gaditana|type=mRNA|length=1097bp
GCAAACGCTACTTTGCTGGCGTGGTGCCGTTCAAGCAACGATTCACGTAA
GAACTCGTACCCATTACTCATTGATCCTCTGACTCGTAAAACGCCTACAA
AGGACTTTAAGCATGCTTTGTAGCGGCTCAGCACTGCGATACAACACCAC
GGCTTTATTGTTGCGGCGCGGCGCGGCGCGTGCAGCTCAGCAAAACTTGA
ATGGAAGAGCGCGCGCCTACACAAGTGTCAGCACGTTGCCCGAGGAATAT
CGTTCCATTCGCGACATGGTCCGTTCGTTTGCTGACACAGAGCTGGTTCC
TAATGCTGCTCAATGGGACAGGGAGCATGTCTTTCCCGCCGATCAGGTGA
AAGCGATCGGGGAGATGGGCTTGATGGGGGTGTCAGTGCCCGAGGAGTAT
GGCGGCGCTGGGATGGACTACATGGCGTACGCAATCGCCATCGAAGAGCT
CAGCCGTGGCTGTGCTTCCACAGGGGTGATCGCCAGTGTGAACAATTCCC
TGTACTGCGGGCCCGTCGCGCAGTTTGGGACGGATGAGCAAAAAGACACA
TGGCTGACGCCATACGCCTCCGGCTCTCAAATTGGATGCTTCGGTCTGTC
GGAACCCGGTAACGGCAGCGACGCCGGCGCCGCGAGCACGACCGCGGTGT
TGGAGGGGGAGGAGTTCGTCTTGAACGGGAGTAAGGCCTGGATCACCAAT
GCCCACGAGGCGAGTGCAGCCATCGTCTTTGCCACCACGGACAAAAGCTT
GAAGCATAAAGGTAGGCTCATGCGTGTCTCGGTGATTTTTGGCTTATCTT
GCCGCCTGTGAGCTCGGCTTTTGGAGTTCCCCCCCCCTTTTTTTTCTCCC
GATTTTTTTCCTTGCCATGTAGTTTTTTCTTTTGCGATACCTTTCATCAT
TCGTTCGCGTTGTAATACGAGGAAGAGTGAGAGGGAAGGAGGGGGGAGGG
AAGGAGGGAGGGGAGGAGGGAGGGAAAGCAGGTGGAAGAGCCTGCTCATT
CGAGTCCTTATCCTGACTGAGGCCGCTATCGACCAGCACGGCTTTCCCCT
TTTGATCGGCATTCGCGCAATTTTTCTTTTCCCTGCTGGTGTCCTGC
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protein sequence of rna6534

>rna6534-protein ID=rna6534-protein|Name=rna6534|organism=Nannochloropsis gaditana|type=polypeptide|length=1362bp
MKGGGPGRGWAGSQGGWVGGRGGQRVEGEHSDSLGHGTLGVGGGPEGLPV
TGRLQQQPHESPPSYPQTALHKARALGRQPYSPPMETPDALWPSIPSSSD
FRSGTGPGIHTLGGESPGPSLVWPSGGSERPRSRLEEGPGHDEASRASPY
GGYGAGELGTPGRGVGNGLGSLGPNTSDGSTVLPESRQAPQHIHLNGGHS
GGNNGFLPPALRHFSMPQEGVPPHVHATPTLGPSARPVDARHVSSSSSGA
SPFLPASHVQPVVEWIAQFIQQKGGMITAANLGSALARLHPNFYALLKAS
HGGLTTFLSEYSHRFRFANDPPFNHIFLQEEGGEEGGRTAAQMPRMPSAP
ASSPWTLQGSMASSFSTGPKRGSGGDLGGEVAPGGRYGGEAPASVHPYPL
QSLQPPASARSSHPSQGVGVGGKDGALSDETLWRSFMSSPGLSAASSSPA
LPPRPGQGVMQRSLSGGAMPVFLSPNHPSFLPQPLTLHEQPQQAHHSAGM
LGGIAGLGPGKVVSSPSLHLLHQQQPPPSGLTYLASTQQQHHQSAALPPP
AGEPRFSGATLLPAHGSQARAMSKLGREGGCPPDQVLETDVVRATGEILR
NAANYALKAVELANTLRARLGTKVLAKVRERYGGLLFLLERHPSFFRVDR
IPKNDCVTLLQGGLMMASAAAPQQQHQVLEGAMPARPLGGGTPLMGGRAM
GGNDGARGGTMSASAYTQTIQQLQQQVALAREKEAFAAAKMRALSQQQHQ
QQHHQQQQQQRQQQPPHQQLQQQQHQQPPHQQQQQQQQQQQPPHHHQQQQ
QQQQQQQQQQQQQQQQQQQQPPHHHHQQQQQQPPPPQQQQHQQQHEQQQQ
PLDQQQYHRQHNQQHIQQQQQQQHQQQSQPQSFQQHQQQYQQQQHQQQWQ
QHAQQLPSNSLSSPFLPSSMENIQLMPEDRQVHEGREGGAEGGRGPTGDA
SLQRRHSWNSLMGMRQDENGDGRGALVVDGVGGGPPTGRPCLGPASASSA
SPPLLPPSLPLATACGAGNGEGGREGGTVGRNVFLPSAAHGAVTLAPFPA
EPGVGDKQSGASPGDGIVVAQHAWRPQEVFLREGDGTALQGEKSGGVEES
VGNGSGAVSPSSSVGATASRGPSRNNSDVNIWAMNNASCGALGSGGGRGE
EGKEDGAMRTLAAHPSDDSFLLFGRGTGGLDVGGQIWVGDGTRSKEEKAH
MPSGWGGGTGLEATGLARVGPTSSFSPSSSSSFLRAHPLQAASHSSSSDS
LSSHCSGSGGGGGRTLRAATLLGPYPLPRSLPHRLPSDGALRIRRDGHGG
AIPWRGRKVRGPANLDQQPFCPHPSLAVGTVAGCRLRDRGGGRTPGRGWH
HHRQQTPGPFET
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mRNA from alignment at CM002468.1:740697..744785+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6534 ID=rna6534|Name=rna6534|organism=Nannochloropsis gaditana|type=mRNA|length=4089bp|location=Sequence derived from alignment at CM002468.1:740697..744785+ (Nannochloropsis gaditana)
ATGAAGGGCGGAGGTCCGGGGCGGGGATGGGCTGGTAGTCAGGGAGGATG ggtaggaggaaggggcggccagcgagtggaaggggagcacAGCGACAGCC TTGGCCATGGCACCCTAGgtgtcgggggagggcctgaaggATTGCCTGTT ACCGGtaggctgcagcagcagccgcacgAGTCGCCACCGTCTTACCCACA GACTGCACTCCACAAGGCGCGTGCCCTCGGGCGGCAGCCATATTCACCGC CTATGGAGACCCCAGACGCCCTGTGGCCTTCGATTCCATCCAGCAGCGAT TTCCGTTCGGGCACCGGCCCTGGCATTCACACCCTGGGAGGGGAATCGCC CGGCCCTAGTCTCGTGTGGCCGTCGGGAGGATCGGAACGGCCGCGCTCCC gactggaggaagggccaggACACGACGAAGCGAGCAGGGCCTCCCCCTAT GGAGGCTACGGAGCAGGCGAATTGGGGACGCCGGGTCGGGGCGTGGGTAA TGGCTTGGGCAGCCTGGGCCCCAACACCAGCGACGGCTCAACCGTCCTGC CCGAGTCTCGTCAGGCCCCGCAGCACATCCATTTAAATGGGGGCCATAGC GGGGGAAATAATGGGTTCCTGCCGCCTGCCTTGCGCCATTTCTCCATGCC CCAAGAAGGAGTGCCCCCCCATGTCCACGCCACGCCCACGCTCGGGCCGT CGGCCCGCCCTGTTGACGCTCGGcatgtctcctcttcctcctccggtgct tcccctttcctacccgcctcccacgtccaGCCGGTGGTAGAGTGGATCGC GCAATTTATTCAACAGAAAGGCGGGATGATCACGGCGGCGAATTTGGGTT CGGCACTGGCCCGCCTGCACCCGAATTTCTACGCACTGTTGAAAGCCTCG CATGGGGGACTGACGACCTTTTTGTCGGAGTACTCGCATCGTTTCAGGTT TGCGAATGACCCGCCTTTCAACCACATCTTTttgcaagaagagggagggg aggaggggggtcggACGGCCGCGCAGATGCCCCGTATGCCCTCGGCGCCT GCCTCGAGCCCCTGGACCCTCCAAGGATCGATGGCCTCCTCGTTTTCGAC GGGTCCCAAGAGAGGATCTGGAGGggacctgggaggggaggtggcccCCG GAGGACGAtacgggggggaggcgcctgCCTCCGTCCATCCCTATCCGCTA CAGTCGCTGCAACCGCCAGCATCGGCACGGTCGTCCCATCCATCTCAGGG CGTCGGAgtcggagggaaggatggagcgcTCAGTGATGAGACGCTCTGGC GCTCTTTcatgtcctcccccgggctctccgccgcttcctcgtcccctgcT CTGCCCCCCCGACCAGGGCAAGGGGTAATGCAGCGCTCTCTTTCCGGGGG TGCcatgcccgtcttcctctcgcccaaccacccgtccttcctcccccagc ccctcaCCCTGCACGAGCAACCACAGCAAGCTCACCACTCGGCGGGCATG CTGGGTGGGATCGCGGGTTTGGGTCCGGGGAAAGtagtttcctccccctc cctccacctcctccaccagcagcagccaccaCCCTCTGGACTGACCTACC TTGCCTCgacacagcagcagcaccaccagTCTGCcgcgctcccgccgccg gcgGGCGAGCCACGTTTCTCGGGCGCCACATTGCTCCCTGCCCATGGAAG CCAGGCTCGTGCCATGTCcaagctggggagggagggagggtgtccCCCGG ACCAAGTCTTGGAAACCGACGTGGTACGGGCCACTGGCGAAATCCTTCGG AACGCGGCCAATTATGCCTTGAAAGCGGTGGAGCTGGCGAATACTTTGCG AGCCCGTTTGGGAACGAAAGTGCTGGCGAAGGTCCGGGAACGGTATGGAG GCTTGCTGTTCCTCTTGGAACGGCAcccttcttttttccgtGTCGACCGG ATTCCTAAAAATGACTGCGTGACCTTACTCCAAGGTGGGTTGATGATGGC GTCGGCGGCCgcgccgcagcagcagcaccaggtGCTGGAAGGGGCCATGC CAGCCAGAcccttgggggggggcacgcccctgatggggggaagagcaatg ggggggaatgacggggcacgggggggaaCCATGTCGGCATCCGCCTATAC CCAAACGAtccagcagctccagcaGCAGGTGGCTCTGgccagggagaagg aggcgtttGCAGCAGCGAAGATGCGTGCGCTCTCtcaacaacaacaccaa caacaacatcatcaacaacaacagcaacagcggcaacaacaaccacctcA TCAACAActacagcagcaacagcatcaACAACCACCTcatcagcaacaac aacaacaacaacagcaacaacaaccacctcatcatcatcaacaacaacaa caacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaca acaacaacaaccacctcatcatcatcatcaacagcaacaacaacaaccac caccaccacaacagcaacaacaccaacaacaacacgagcaacagcagcaa ccaCTAGACCAACAACAATATCATCGGCAACATAATCAGCAACATattca gcagcaacaacaacaacaacatcaacaacAATCACAACCACAATCCTTTC AacagcatcagcagcaatatcaacagcaacagcaccagcaacagTGGCAG CAACATGCTCAGCAATTGCCATCGAAtagtctctcctcccccttcctgcc atCTTCCATGGAGAATATTCAATTGATGCCAGAGGACCGGCAAGTccatg aagggagggagggaggggccgagggagggaggggtccgaCCGGGGATGCC TCCCTGCAACGGCGACACTCATGGAACAGTCTGATGGGCATGCGACAGGA CGAAAATGGCGACGGGAGAGGGGCTTTGGTAGTCGACGGGGTCGGTGGAG GGCCGCCAACAGGGCGTCCTTGCCTGGGgcccgcctctgcctcgtccgCG TCTCCGCCCttgttgcctccctccctgcccctggcGACCGCCTGTGGGGC TGgaaatggggagggagggagggagggtggaacgGTCGGCAGGAACGTGT TCCTGCCTTCTGCGGCGCACGGGGCGGTGACACTCGCCCCATTCCCAGCG GAACCGGGCGTTGGGGACAAGCAAAGCGGGGCTAGCCCGGGTGATGGGAT TGTGGTGGCACAGCATGCCTGGCGTCCGCAAGAAGTGTTCTTACGGGAAG GTGACGGCACGGCACTCCAAGGAGAAAAGTCcggtggggtggaggaaagc gtcgGTAACGGCTCTGGAGCCGtttcaccctcttcttcggtTGGGGCGAC CGCCAGTCGCGGTCCTTCGAGGAACAATAGTGACGTGAATATTTGGGCCA TGAACAATGCGAGTTGTGGTGCGTTAGGctccgggggagggcggggcgag gaagggaaagaggacggggcgaTGCGAACGCTGGCTGCGCACCCGTCGGA tgactccttcctcctcttcggccgAGGAACCGGGGGGTTGGACGTAGGGG GGCAGATCTGGGTGGGTGACGGCACGCgctcgaaggaggaaaaggcccAC ATGCCGTccggatgggggggaggaacaggGTTGGAGGCCACGGGGCTTGC ACGCGTGGGACCGACGTCgagcttctccccctcctcctcctcctccttcc tccgtgcccatcccctccaagccgccagccacagcagcagcagcgacagc ctGAGCAGCCATTGCagtgggagcgggggggggggcgggaggacttTGCG GGCAGCAACCCTCCTTGGGCCttaccctctcccccgcagcctcccccatc gcctcccctccgacgGCGCTCTCCGCATTAGGCGCGACGGGCACGGCGGG GCTATcccatggagggggaggaaggtgcgcGGTCCTGCAAATCTTGACCA ACAACCATTTTGTCCCCACCCAAGCCTGGCCGTTGGAACCGTTGCGGGAT GCCGGCTACGTGACCGTGGTGGCGGAAGAACTCCGGGCCGTGGGTGGCAC CACCACCGTCAGCAAACTCCGGGGCCTTTTGAAACATAA
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Coding sequence (CDS) from alignment at CM002468.1:740697..744785+

>rna6534 ID=rna6534|Name=rna6534|organism=Nannochloropsis gaditana|type=CDS|length=4089bp|location=Sequence derived from alignment at CM002468.1:740697..744785+ (Nannochloropsis gaditana)
ATGAAGGGCGGAGGTCCGGGGCGGGGATGGGCTGGTAGTCAGGGAGGATG
ggtaggaggaaggggcggccagcgagtggaaggggagcacAGCGACAGCC
TTGGCCATGGCACCCTAGgtgtcgggggagggcctgaaggATTGCCTGTT
ACCGGtaggctgcagcagcagccgcacgAGTCGCCACCGTCTTACCCACA
GACTGCACTCCACAAGGCGCGTGCCCTCGGGCGGCAGCCATATTCACCGC
CTATGGAGACCCCAGACGCCCTGTGGCCTTCGATTCCATCCAGCAGCGAT
TTCCGTTCGGGCACCGGCCCTGGCATTCACACCCTGGGAGGGGAATCGCC
CGGCCCTAGTCTCGTGTGGCCGTCGGGAGGATCGGAACGGCCGCGCTCCC
gactggaggaagggccaggACACGACGAAGCGAGCAGGGCCTCCCCCTAT
GGAGGCTACGGAGCAGGCGAATTGGGGACGCCGGGTCGGGGCGTGGGTAA
TGGCTTGGGCAGCCTGGGCCCCAACACCAGCGACGGCTCAACCGTCCTGC
CCGAGTCTCGTCAGGCCCCGCAGCACATCCATTTAAATGGGGGCCATAGC
GGGGGAAATAATGGGTTCCTGCCGCCTGCCTTGCGCCATTTCTCCATGCC
CCAAGAAGGAGTGCCCCCCCATGTCCACGCCACGCCCACGCTCGGGCCGT
CGGCCCGCCCTGTTGACGCTCGGcatgtctcctcttcctcctccggtgct
tcccctttcctacccgcctcccacgtccaGCCGGTGGTAGAGTGGATCGC
GCAATTTATTCAACAGAAAGGCGGGATGATCACGGCGGCGAATTTGGGTT
CGGCACTGGCCCGCCTGCACCCGAATTTCTACGCACTGTTGAAAGCCTCG
CATGGGGGACTGACGACCTTTTTGTCGGAGTACTCGCATCGTTTCAGGTT
TGCGAATGACCCGCCTTTCAACCACATCTTTttgcaagaagagggagggg
aggaggggggtcggACGGCCGCGCAGATGCCCCGTATGCCCTCGGCGCCT
GCCTCGAGCCCCTGGACCCTCCAAGGATCGATGGCCTCCTCGTTTTCGAC
GGGTCCCAAGAGAGGATCTGGAGGggacctgggaggggaggtggcccCCG
GAGGACGAtacgggggggaggcgcctgCCTCCGTCCATCCCTATCCGCTA
CAGTCGCTGCAACCGCCAGCATCGGCACGGTCGTCCCATCCATCTCAGGG
CGTCGGAgtcggagggaaggatggagcgcTCAGTGATGAGACGCTCTGGC
GCTCTTTcatgtcctcccccgggctctccgccgcttcctcgtcccctgcT
CTGCCCCCCCGACCAGGGCAAGGGGTAATGCAGCGCTCTCTTTCCGGGGG
TGCcatgcccgtcttcctctcgcccaaccacccgtccttcctcccccagc
ccctcaCCCTGCACGAGCAACCACAGCAAGCTCACCACTCGGCGGGCATG
CTGGGTGGGATCGCGGGTTTGGGTCCGGGGAAAGtagtttcctccccctc
cctccacctcctccaccagcagcagccaccaCCCTCTGGACTGACCTACC
TTGCCTCgacacagcagcagcaccaccagTCTGCcgcgctcccgccgccg
gcgGGCGAGCCACGTTTCTCGGGCGCCACATTGCTCCCTGCCCATGGAAG
CCAGGCTCGTGCCATGTCcaagctggggagggagggagggtgtccCCCGG
ACCAAGTCTTGGAAACCGACGTGGTACGGGCCACTGGCGAAATCCTTCGG
AACGCGGCCAATTATGCCTTGAAAGCGGTGGAGCTGGCGAATACTTTGCG
AGCCCGTTTGGGAACGAAAGTGCTGGCGAAGGTCCGGGAACGGTATGGAG
GCTTGCTGTTCCTCTTGGAACGGCAcccttcttttttccgtGTCGACCGG
ATTCCTAAAAATGACTGCGTGACCTTACTCCAAGGTGGGTTGATGATGGC
GTCGGCGGCCgcgccgcagcagcagcaccaggtGCTGGAAGGGGCCATGC
CAGCCAGAcccttgggggggggcacgcccctgatggggggaagagcaatg
ggggggaatgacggggcacgggggggaaCCATGTCGGCATCCGCCTATAC
CCAAACGAtccagcagctccagcaGCAGGTGGCTCTGgccagggagaagg
aggcgtttGCAGCAGCGAAGATGCGTGCGCTCTCtcaacaacaacaccaa
caacaacatcatcaacaacaacagcaacagcggcaacaacaaccacctcA
TCAACAActacagcagcaacagcatcaACAACCACCTcatcagcaacaac
aacaacaacaacagcaacaacaaccacctcatcatcatcaacaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaca
acaacaacaaccacctcatcatcatcatcaacagcaacaacaacaaccac
caccaccacaacagcaacaacaccaacaacaacacgagcaacagcagcaa
ccaCTAGACCAACAACAATATCATCGGCAACATAATCAGCAACATattca
gcagcaacaacaacaacaacatcaacaacAATCACAACCACAATCCTTTC
AacagcatcagcagcaatatcaacagcaacagcaccagcaacagTGGCAG
CAACATGCTCAGCAATTGCCATCGAAtagtctctcctcccccttcctgcc
atCTTCCATGGAGAATATTCAATTGATGCCAGAGGACCGGCAAGTccatg
aagggagggagggaggggccgagggagggaggggtccgaCCGGGGATGCC
TCCCTGCAACGGCGACACTCATGGAACAGTCTGATGGGCATGCGACAGGA
CGAAAATGGCGACGGGAGAGGGGCTTTGGTAGTCGACGGGGTCGGTGGAG
GGCCGCCAACAGGGCGTCCTTGCCTGGGgcccgcctctgcctcgtccgCG
TCTCCGCCCttgttgcctccctccctgcccctggcGACCGCCTGTGGGGC
TGgaaatggggagggagggagggagggtggaacgGTCGGCAGGAACGTGT
TCCTGCCTTCTGCGGCGCACGGGGCGGTGACACTCGCCCCATTCCCAGCG
GAACCGGGCGTTGGGGACAAGCAAAGCGGGGCTAGCCCGGGTGATGGGAT
TGTGGTGGCACAGCATGCCTGGCGTCCGCAAGAAGTGTTCTTACGGGAAG
GTGACGGCACGGCACTCCAAGGAGAAAAGTCcggtggggtggaggaaagc
gtcgGTAACGGCTCTGGAGCCGtttcaccctcttcttcggtTGGGGCGAC
CGCCAGTCGCGGTCCTTCGAGGAACAATAGTGACGTGAATATTTGGGCCA
TGAACAATGCGAGTTGTGGTGCGTTAGGctccgggggagggcggggcgag
gaagggaaagaggacggggcgaTGCGAACGCTGGCTGCGCACCCGTCGGA
tgactccttcctcctcttcggccgAGGAACCGGGGGGTTGGACGTAGGGG
GGCAGATCTGGGTGGGTGACGGCACGCgctcgaaggaggaaaaggcccAC
ATGCCGTccggatgggggggaggaacaggGTTGGAGGCCACGGGGCTTGC
ACGCGTGGGACCGACGTCgagcttctccccctcctcctcctcctccttcc
tccgtgcccatcccctccaagccgccagccacagcagcagcagcgacagc
ctGAGCAGCCATTGCagtgggagcgggggggggggcgggaggacttTGCG
GGCAGCAACCCTCCTTGGGCCttaccctctcccccgcagcctcccccatc
gcctcccctccgacgGCGCTCTCCGCATTAGGCGCGACGGGCACGGCGGG
GCTATcccatggagggggaggaaggtgcgcGGTCCTGCAAATCTTGACCA
ACAACCATTTTGTCCCCACCCAAGCCTGGCCGTTGGAACCGTTGCGGGAT
GCCGGCTACGTGACCGTGGTGGCGGAAGAACTCCGGGCCGTGGGTGGCAC
CACCACCGTCAGCAAACTCCGGGGCCTTTTGAAACATAA
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Synonyms
Publications