rna6531, rna6531 (mRNA) Nannochloropsis gaditana

Overview
Namerna6531
Unique Namerna6531
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1587
Alignment locationCM002468.1:730763..732502 -

Link to JBrowse

Properties
Property NameValue
Productqueuine trna-ribosyltransferase
Orig transcript idgnl|cribi|Naga_100741g2.7090.mrna
Orig protein idgnl|cribi|Naga_100741g2.7090
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:730763..732502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100741g2gene6309Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24160.1cds6515Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6531rna6531-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6531 ID=rna6531|Name=rna6531|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp
CTTTTTTTGCTGATATCTGGCTGTTTTAAAAATCGAGTTGCGCCCAGTCA
CCTCTTTAATTTCTGGCTGTCAACGTCACAGGAAAACTCCTCCATGACGA
GCACTTTTCCAGGACAAAGAGGCCGTCACCTGCTGCACGGCGCTTGCCAG
GCCTTCGCCTCCCCATGTCCTCGACTTAAGCCCACGGCCTTGCATCGCCA
TGTTCTTCCTTGTCCGACGATGCGTCCCCTTCCTTCTTTTTTCGAGTCTA
AGCCCTTTGTAAATGGCTTCATCTCCAATGCCACGTTCTCCTCCTCCTCC
TCCTCCCTCGCCTCGTCTTCCCCTTCCTCCTCCCCCTCCTCCTCCCCTTC
CTCCCCCTCCCTCCCGTCCTCTTCCACGGATACTTCTCCACCGCCACCTT
CGTCGACAGCCAGTGAAGTCTCCTCCTCGACCAGCTCCATCCAACAAGAC
ACCACCCATTTCGGGTACCAACAAGTCCCTGTGGGGGACAAGGAGAAACT
GGTCAAGACCGTCTTCGACAGTGTGGCGGGGAAGTACGATGTGATGAACG
ACCTCATGTCCGGGGGCCTCCACCGTCTGTGGAAGGACGACTTTGTGAGC
AGCGCCGGATTGCCCGCCGTGCTCCGGGCCCAGGGCGGGGGGAAAGACAT
CCGCCTCCTGGACGTGGCAGGCGGCACGGGCGACATTGCCTTCCGACTCA
TGAAGACAGCCTTGGGCGTCGACGCCGGTGCCAGGCTCCCTGCCATCACT
GTCTTTGACATCAACGCGGAAATGTTGAAGGTGGGGAGGGCCCGGGCGGA
GGAAGAGGTCTTTCCCACCCAGGCGCCTGTGCGGGCCTGCATGGAGTGGG
TGGAGGGGAATGCCGAAGCTTTGCCGTTTCCCGACGACACCTTTGATTTG
TACACGATCGCTTTTGGGCTCCGAAACGTGACGCGTCGGGCCCAGGCATT
GGCGGAGGCGCGCCGGGTCTTAAAGCGCGGGGGCCGGTTTATGTGCCTAG
AATTCTCGCACGTCTCCCTCCCCCTCGTGAAGGACGCCTACGACCTGTAC
TCCTTCCAGATCATTCCTCGGATGGGCCAGGCCGTGACGGGCGATGCGGA
GGCCTACCGATACCTGGTCGAGTCCATCCGGCAATTCCCCCGGCAGGAGG
TATTGCTTCGGGAGGTGGAAGAGGCAGGCTTTGGGAGCGTGTCCTTTGTC
AATTACAGCCTGGGCAGCGTCGCCGTCCACTCAGGGTTCAAGTGGGGGTA
GGGTGGGGAAAAGGGGGACAAGCAGGAGGGGAGGAAGGGAGGGGGGAGGG
AGGCAATGTAACGGTCCTGCGATCCGGTCAACGGGCGACAACGGCCACGA
ATTCAAAATTTTGATGTTGACTTCGTTATCCTGCGAATGGCATTTTTCCC
ATTTCTCCCCTCTTTCAAATGCCCGGGTCTCTTTGCTCGAACGTCGTCCC
TGCCATACCTCTGGCTTCCTCACATCAACACAACCTCCTCCTCCTCCTCC
TCCCTCCTCGCCCCACCTGCGCCCTCTGTCTTCGGTTCTGCCGCCCGGTG
GTCTCGGGCCTTGTCCTCGTCGGTCTGTCGGAGCTCA
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protein sequence of rna6531

>rna6531-protein ID=rna6531-protein|Name=rna6531|organism=Nannochloropsis gaditana|type=polypeptide|length=459bp
MGDNDSTGAPSEPILPPLVPEGTSPSFTPASPALCFHIHARWRRARAATV
HLPHGPLATPVFMPVGTKGTIKGIPTEQLLHEDLSPQIILGNTYHLALQP
GTELLEEMGGLHEFMQWPRNLLTDSGGFQMVSLLALAEITEEGVRFQSPV
DGTQMLLTPEMSIAHQNRIGSDIMMQLDDVVSSVTVDHARFVEATARSIR
WLDRCRKAHSRPREQNLFGIIQGGLDTSPGGLRDECLTAMVARDCPGYAI
GGLAGGESKEAFWKVVAQCTAALPEGKPRYLMGVGYPLDLVVCTALGVDM
YDCVYPTRTARFGVALRDAGVLKLKNKACAGEEKQAIDPLCGCMVCRHYS
QAALHRLLKSGALGCQLVTYHNLAYMLGLMRRMRSAIMQGGQAFPHFVVG
FLTTHYAWKNREEGVECRRKGECGMVPEWVREALAVAGIDVPDQSQEGNG
HDRGGKDPV
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mRNA from alignment at CM002468.1:730763..732502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6531 ID=rna6531|Name=rna6531|organism=Nannochloropsis gaditana|type=mRNA|length=1740bp|location=Sequence derived from alignment at CM002468.1:730763..732502- (Nannochloropsis gaditana)
CTCACAAATTACACACACAGGATATCGTGCATGAGAAAATCGCGACGGTG
GTCAGCAAATTTTCTTCGCGGACGGATGCACATTTTTTCTTGCTAGAGTC
GAGCAACCTGTCATTTTTGCGACTGGTGCTTTCGCTTCATCCGCAGTATT
TTCCCGACGGAGGGGGCTGTGTGCAATGGGTGACAACGACAGCACTGGTG
CACCTTCGGAGCCAATTCTGCCTCCCCTGGTTCCTGAAGGGACGTCACCA
AGCTTTACACCTGCTTCCCCCGCCCTGTGCTTTCACATTCATGCCCGGTG
GCGGCGGGCACGCGCTGCCACAGTCCACCTGCCGCACGGCCCCCTAGCGA
CCCCAGTATTCATGCCAGTGGGTACAAAGGGGACCATCAAGGGCATCCCC
ACCGAGCAACTACTGCACGAAGACCTTTCTCCGCAAATCATTCTGGGTAA
CACGTACCATCTGGCACTGCAGCCTGGGACGGAGCTCCTGGAGGAAATGG
GGGGGTTGCATGAATTCATGCAATGGCCTCGCAATTTGCTCACAGACTCC
GGTGGCTTCCAGATGGTCTCTTTACTCGCCTTGGCAGAGATCACGGAGGA
AGGTGTGCGGTTTCAGAGCCCCGTGGACGGGACGCAGATGCTCCTGACCC
CCGAGATGTCCATCGCGCACCAAAACCGTATCGGCTCGGACATTATGATG
CAATTGGACGACGTGGTTTCCTCTGTGACCGTGGACCATGCGCGTTTCGT
GGAGGCAACAGCACGCTCCATCCGGTGGCTGGATCGCTGCAGGAAGGCCC
ACTCGCGTCCCCGGGAACAAAATTTGTTTGGTATTATCCAGGGAGGACTT
GATACCTCCCCAGGCGGCCTCCGGGACGAATGTTTGACAGCCATGGTAGC
TCGCGACTGCCCTGGCTACGCGATCGGCGGCCTAGCAGGCGGGGAAAGCA
AAGAGGCCTTCTGGAAGGTGGTGGCGCAGTGCACGGCGGCCCTTCCGGAG
GGGAAACCTCGGTATTTGATGGGCGTGGGCTATCCGTTGGATCTGGTCGT
GTGCACCGCCCTAGGCGTTGACATGTACGATTGCGTGTACCCCACGCGAA
CGGCCCGCTTTGGGGTGGCGCTTAGAGACGCGGGCGTCCTCAAACTGAAA
AACAAGGCGTGTGCCGGGGAGGAAAAGCAAGCCATCGACCCTTTGTGCGG
GTGCATGGTTTGTCGACATTATTCGCAAGCGGCCCTGCATCGCCTCCTTA
AGTCGGGTGCCTTAGGGTGTCAATTGGTCACGTACCACAATCTTGCCTAC
ATGCTGGGCTTGATGCGCCGGATGCGGAGTGCGATCATGCAAGGAGGTCA
AGCCTTCCCTCACTTTGTAGTGGGTTTTCTGACGACGCATTATGCCTGGA
AAAACAGGGAAGAGGGGGTAGAGTGCAGGAGGAAAGGAGAATGCGGGATG
GTACCGGAATGGGTAAGGGAGGCTCTAGCTGTGGCGGGCATAGACGTGCC
AGATCAGTCGCAGGAGGGGAACGGGCATGACCGGGGAGGCAAGGACCCTG
TCTAATCTCTTAAAATCAATGCAAAAGATACGAAATGGTTGTAAAGATGG
CTTGAGGCTTAATTAAGAAGTGGCTTGGAGCTTATTGCTTGCATTGGAAA
GAATGCATGCGTGTATGGGATTGAGCTGAACGGTGCAAAAGGCAGTCCGC
AGCAGGAATGCCTGTTTCATAATAATTATCTGTACCCTGC
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Coding sequence (CDS) from alignment at CM002468.1:730763..732502-

>rna6531 ID=rna6531|Name=rna6531|organism=Nannochloropsis gaditana|type=CDS|length=1380bp|location=Sequence derived from alignment at CM002468.1:730763..732502- (Nannochloropsis gaditana)
ATGGGTGACAACGACAGCACTGGTGCACCTTCGGAGCCAATTCTGCCTCC
CCTGGTTCCTGAAGGGACGTCACCAAGCTTTACACCTGCTTCCCCCGCCC
TGTGCTTTCACATTCATGCCCGGTGGCGGCGGGCACGCGCTGCCACAGTC
CACCTGCCGCACGGCCCCCTAGCGACCCCAGTATTCATGCCAGTGGGTAC
AAAGGGGACCATCAAGGGCATCCCCACCGAGCAACTACTGCACGAAGACC
TTTCTCCGCAAATCATTCTGGGTAACACGTACCATCTGGCACTGCAGCCT
GGGACGGAGCTCCTGGAGGAAATGGGGGGGTTGCATGAATTCATGCAATG
GCCTCGCAATTTGCTCACAGACTCCGGTGGCTTCCAGATGGTCTCTTTAC
TCGCCTTGGCAGAGATCACGGAGGAAGGTGTGCGGTTTCAGAGCCCCGTG
GACGGGACGCAGATGCTCCTGACCCCCGAGATGTCCATCGCGCACCAAAA
CCGTATCGGCTCGGACATTATGATGCAATTGGACGACGTGGTTTCCTCTG
TGACCGTGGACCATGCGCGTTTCGTGGAGGCAACAGCACGCTCCATCCGG
TGGCTGGATCGCTGCAGGAAGGCCCACTCGCGTCCCCGGGAACAAAATTT
GTTTGGTATTATCCAGGGAGGACTTGATACCTCCCCAGGCGGCCTCCGGG
ACGAATGTTTGACAGCCATGGTAGCTCGCGACTGCCCTGGCTACGCGATC
GGCGGCCTAGCAGGCGGGGAAAGCAAAGAGGCCTTCTGGAAGGTGGTGGC
GCAGTGCACGGCGGCCCTTCCGGAGGGGAAACCTCGGTATTTGATGGGCG
TGGGCTATCCGTTGGATCTGGTCGTGTGCACCGCCCTAGGCGTTGACATG
TACGATTGCGTGTACCCCACGCGAACGGCCCGCTTTGGGGTGGCGCTTAG
AGACGCGGGCGTCCTCAAACTGAAAAACAAGGCGTGTGCCGGGGAGGAAA
AGCAAGCCATCGACCCTTTGTGCGGGTGCATGGTTTGTCGACATTATTCG
CAAGCGGCCCTGCATCGCCTCCTTAAGTCGGGTGCCTTAGGGTGTCAATT
GGTCACGTACCACAATCTTGCCTACATGCTGGGCTTGATGCGCCGGATGC
GGAGTGCGATCATGCAAGGAGGTCAAGCCTTCCCTCACTTTGTAGTGGGT
TTTCTGACGACGCATTATGCCTGGAAAAACAGGGAAGAGGGGGTAGAGTG
CAGGAGGAAAGGAGAATGCGGGATGGTACCGGAATGGGTAAGGGAGGCTC
TAGCTGTGGCGGGCATAGACGTGCCAGATCAGTCGCAGGAGGGGAACGGG
CATGACCGGGGAGGCAAGGACCCTGTCTAA
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Synonyms
Publications