rna6529, rna6529 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6529
Unique Name	rna6529
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3026
Alignment location	CM002468.1:728195..728913 +

Link to JBrowse

Properties


Property Name	Value
Product	ring fyve phd zinc finger-containing protein
Orig transcript id	gnl\|cribi\|Naga_100741g4.7087.mrna
Orig protein id	gnl\|cribi\|Naga_100741g4.7087
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:728195..728913 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100741g4	gene6307	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6529	rna6529-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24157.1	cds6513	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:728195..728913+
coding sequence from alignment at CM002468.1:728195..728913+

mRNA sequence

>rna6529 ID=rna6529|Name=rna6529|organism=Nannochloropsis gaditana|type=mRNA|length=3026bp
TGTGCCGCGTCCTTTTGTTTCTGTGTCGTAGGCTGTGGGTGTCATTTGGA
CGGATGAAAGGAAAATGATCAGGGAAGGGGGAGACTGTTCATCCCAAAAC
TCCTAGCAAAAAGGGACTTCAACAAGTCACCACATGTCCCTCAAGGAAGT
ACAGAGACGCTACGATAGGCAGTATGGTCTCTTCGGTGTGGCTGTTGGCT
CTTTTTTTGTCCTTAGCCCTGCAAAATGTCCTAGCACAGTCGAGGTGTCA
GCTAAACAAGGACTGTGCGGAGGAGCAATTTTGTCTCTTCCCGGATGGGG
CGTGTGAGGGTAGAGGCACCTGTCAGGATGTCCCGTCTTTGTAAGTAAGG
AGGGAGGGAGGGAGGGAAGGAGGGAGGGAGAGAAGGTGGGAGGGAAGAAA
GGAGGGAAAAGATGAGATGCACCATAAGCGAAAAAGTGCTGTAGCCGGAC
GGGGGGGCGTGTCGGGGCTGCCTCTTTATCTGTTGAGGCGCGCGTTGTCA
TGCATTGACGTGCAATTTACGCGGGACAGGTGTACGATGGACTACCGCCC
TGTATGCGGCTGCGACGGGACAATCTACGGCAATCGCTGCGAAGCCCTCA
GTGCCAGCATGTCGGTACGGATGGCAGGGGAATGCGGCGCCGGGGAGGAG
GATTCCTCCCTCCTTCCCCCCCAAGATGTGGACGAGGCAGGCGTGCCAGG
GCGTGTCTCAGCCAAGAGGAGGGAAGGGGCAATGGGAAGGGGAAGGACGC
GGCGAGATTTGCTCTCGGTGGAAGGCTGGACGTTGTCTAAGGAGAGCGTG
CGTTTGGACACGGACGCCGCGGCGGCAAGCGGGGACCTTGGGGAAGAAGG
GAGGGGCACTTTCTCCCTCCCAGCGGGCCGCCCTCCGACGTGGGCGGGGG
AGGAAGACGAGGAGGAAGCGGCGGAGGGAGGACAGCGGTGTGGGTCCCGA
GGCCTGCTGTCGTGTCCGGAAGGGGCATGGTGCGAGTACGTCGACGGTAC
CTGCGGAGATGGGGACCGGGGCGGGCGGTGTCGCCCCCTGCGGGTGGCCT
GTCCTCGGATCTATGCGCCCGTGTGTGGATGTGACGGGCGGACGCATGCC
AATACGTGCGTGGCGGGGGCGGCGCGGGTGAGTGTCCGGCATGCGGGTCC
CTGCGAGCGCGTCGACGCCTGGCCTCCGGGTAGGATATCGCCGGATTTGA
CCGAGGTGACGGGTCAAGAGGAGGAGAGACCGTCGGCGTTGCGGCCGGGA
GGGTTGCCAGGGCTGGGGGGAAGGCGGGACGGAGGTGCCGAAGGAGGGCA
GGATGGTGATGTGCGGGCGTGCGGTGGCCTTGAAGGGTTGGCTTGCCCCG
TCGGTCATGCCTGTATTTATCCTCCCGGAACCTGCGGAGCGGCGGACGAG
ATGGGTATCTGTCTCCCAGCACCCCTAGTCTGCGCCTTGATTTACCAGCC
CGTGTGCGGGTGCGACGGCCACACCTACGCCAATGACTGCCACGCCCACG
CTGCCTCTGTCTCCATTGTCGCCCAAGGTCCTTGCTCGCCCCCCGACCAG
GCGCCGGCGGCGGTAGCCGCAGCCACGACGCCTGCCGTGGAAGAAGCTCC
GTTCCCTCCCTCCCTCCCCAGCTCCCCGGTGACGCCTGCAACCAGCGTGG
AAGAGGGTCGCCTGGGGGAAATGGATGGAGGGGTATCATCGGAGGCTGTG
GGCAGTTGGGTAGGGGCGGTGGGGAGGGCGGTGTCTCAAAAGTGGCAAGG
AAGGTTGGGGGAAGGTGCAGTTGAGGAAGGAAGGGGAAGGAAGAGGTGAT
GCAATGAACAGACGATGCTTGAGAGCCGGTACTGTTCGTCGAAAGGAAGA
GGGGCGTGGAAGGCAGGGCGGGCGTGCGGAATTGGGGTGACGGGATGTTG
GTTGAACAAATAGGAGGGACAAAAAAGGAGGAGAGGCGCCCCTGCTGAAT
TTGAAAGGGCAGTGAACCCGCAATTGGAAGCATGAAGCGGGCATTCAAGT
GACGTTACACGCCGTGCTTCTGAGTAAGGCACGGAGCGGGGCCGGGCATG
TATAAATGTGGAGGTTTGATAGGGTTTTTATATCCTCGCGGAAGGAGAGA
GGTCTCTCGTGACCATTCTGGCAAAGGAAACCTCAGCTATCCCGACAATC
GACGCTGAAATTTGTCAAGCCCTTCGCAGGGTAATATTTTGTTCTTTTGG
AGCACGTTTCGGACCACGTTTCCATCGGTAGGGGGCGTCCTGGACACTTT
TATGTTCTTCAAACTGAATGAGAGGGAGCACTTCAACAGGGGAGACAACC
AGGCGGGGGAGGTTTTTTCTGACACAGCTTAAATATCACGGGTCCTGGCC
GTCAGCCGCTTATATTAGAGATATGCATGCGATATATATCCAATATATAG
CTAGATTTTCATCTATGCTGCCGCAGAAGGCGCCATTTTGCATCCCAAGA
CCACTGAAATGACACTTTATCCATGTTCAGCCCCCCCGGTCCCGACCTCC
CTCGACATCCTTTTCCTTTCATTCCCCCCCCCCTTCCCTGCACTAATACT
ACGCATGACTCACGGTCAAACAGAAATAAGCCATGGAGACGCCAGAAGCA
CCACGGACCCCGCCGTTGTCCGTCAGGCCCCGTCCTCGGTGGGTGCACGA
TATAGAGGCTGTTGTCTGTCAAGAATGCCGCGCGCCATTTAACCCTCTGA
CCCGTCGAAGACACCACTGCCGTGTTTGTGGACGTGTTCTATGCCTAGCA
TGCACGCGACAGCAACTCTTGATCCCGTCTTCTGAGCTGATCGCTCCTCG
AAAGATGCCAGCGGCCGCAATGCAACCCTTGAGTGTTGATCCTTACATCC
CCCAAAGAGCATGCCGGGCATGCGCAAGCCATCTAGCTCCTCTGCAGGCC
ACACTCCAGCAATCCAGCAGCAAGGCCACGCAAAGGATTCACGTGGAGCG
TCATTCCTGGGCGCGGTATTTCAACCCTCCTTTCCAATCGGCACTGGAGG
AGGAGATCCGAAAAGCCACATACTCG

protein sequence of rna6529

>rna6529-protein ID=rna6529-protein|Name=rna6529|organism=Nannochloropsis gaditana|type=polypeptide|length=180bp
ITGGGREGGKEGGRLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYG
KRSVTVRELLNGDMAPPTAAEPLYEALQEVMGMEGEGKGGEEPDLLDGGK
VRERREEEGEEEGEDEEEEEEGERRWRNMEKNAEMKTFRVSHELRQTDED
KARDHRAAEPKTEGAGGARREEEEEEVVLM

mRNA from alignment at CM002468.1:728195..728913+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6529 ID=rna6529|Name=rna6529|organism=Nannochloropsis gaditana|type=mRNA|length=719bp|location=Sequence derived from alignment at CM002468.1:728195..728913+ (Nannochloropsis gaditana)
ATtaccggggggggaagggagggagggaaggagggggggaggctggaagC
GGGATTTTGCTACGGACAGAGCAGGGGGGCGTTCGTGGGGGTGTCGGTGG
AGGGGACCCTTTTGTTTTCCCGGGACCGCGTGAACGAAAAATTTTACGGG
AAACGGTCGGTAACGGTCCGGGAACTGTTAAACGGAGACATGGCCCCGCC
AACGGCTGCCGAGCCGTTGTATGAGGCATTGCAAGAGgtgatggggatgg
aaggggaaggaaaaggaggggaagagccgGACCTcctggacggagggaag
gttagggagaggagggaggaggaaggggaggaggagggggaggacgagga
ggaggaggaggagggagagaggagatggcggaACATGGAAAAAAATGCCG
AAATGAAGACCTTCCGTGTCAGCCATGAGCTCCGACAGAccgacgaggac
aaggcccgAGACCACCGGGCGGCAGAACCGAAGACAGAGGGCGCAGgtgg
ggcgaggagggaggaggaggaggaggaggttgtgttGATGTGAGGAAGCC
AGAGGTATGGCAGGGACGACGTTCGAGCAAAGAGACCCGGGCATttgaaa
gaggggagaaatgggaaaaaTGCCATTCGCAGGATAACGAAGTCAAcatc
aaaattttgaattcgTGGCCGTTGTCGCCCGTTGACCGGATCGCAGGACC
GTTAcattgcctccctccc

Coding sequence (CDS) from alignment at CM002468.1:728195..728913+

>rna6529 ID=rna6529|Name=rna6529|organism=Nannochloropsis gaditana|type=CDS|length=543bp|location=Sequence derived from alignment at CM002468.1:728195..728913+ (Nannochloropsis gaditana)
ATtaccggggggggaagggagggagggaaggagggggggaggctggaagC
GGGATTTTGCTACGGACAGAGCAGGGGGGCGTTCGTGGGGGTGTCGGTGG
AGGGGACCCTTTTGTTTTCCCGGGACCGCGTGAACGAAAAATTTTACGGG
AAACGGTCGGTAACGGTCCGGGAACTGTTAAACGGAGACATGGCCCCGCC
AACGGCTGCCGAGCCGTTGTATGAGGCATTGCAAGAGgtgatggggatgg
aaggggaaggaaaaggaggggaagagccgGACCTcctggacggagggaag
gttagggagaggagggaggaggaaggggaggaggagggggaggacgagga
ggaggaggaggagggagagaggagatggcggaACATGGAAAAAAATGCCG
AAATGAAGACCTTCCGTGTCAGCCATGAGCTCCGACAGAccgacgaggac
aaggcccgAGACCACCGGGCGGCAGAACCGAAGACAGAGGGCGCAGgtgg
ggcgaggagggaggaggaggaggaggaggttgtgttGATGTGA

Synonyms

Publications