EWM24157.1, cds6513 (CDS) Nannochloropsis gaditana

Overview
NameEWM24157.1
Unique Namecds6513
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:728195..728737 +

Link to JBrowse

Properties
Property NameValue
Start range728195
Start range.
Protein idEWM24157.1
Productring fyve phd zinc finger-containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100741g4.7087.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:728195..728737 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007461Ysc84_actin-binding
Homology
BLAST of EWM24157.1 vs. NCBI_GenBank
Match: gi|585105526|gb|EWM24157.1| (ring fyve phd zinc finger-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 347.051 bits (889), Expect = 1.300e-120
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 ITGGGREGGKEGGRLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQEVMGMEGEGKGGEEPDLLDGGKVRERREEEGEEEGEDEEEEEEGERRWRNMEKNAEMKTFRVSHELRQTDEDKARDHRAAEPKTEGAGGARREEEEEEVVLM 180
            ITGGGREGGKEGGRLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQEVMGMEGEGKGGEEPDLLDGGKVRERREEEGEEEGEDEEEEEEGERRWRNMEKNAEMKTFRVSHELRQTDEDKARDHRAAEPKTEGAGGARREEEEEEVVLM
Sbjct:    1 ITGGGREGGKEGGRLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQEVMGMEGEGKGGEEPDLLDGGKVRERREEEGEEEGEDEEEEEEGERRWRNMEKNAEMKTFRVSHELRQTDEDKARDHRAAEPKTEGAGGARREEEEEEVVLM 180          
BLAST of EWM24157.1 vs. NCBI_GenBank
Match: gi|299115365|emb|CBN74194.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.8702 bits (185), Expect = 8.193e-13
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 0
Query:   19 FCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQEVMGMEGEGKGGEEPDLLDGG 99
            + Y  SRG F G+S+EG ++ SR  VN KFYG R V+VR+LL+G +APP AA PLYEAL      +  G G ++  LL  G
Sbjct:  471 YSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYG-RQVSVRDLLSGSVAPPPAARPLYEAL------DNRGPGADQQRLLSQG 544          
BLAST of EWM24157.1 vs. NCBI_GenBank
Match: gi|1069963680|ref|XP_018285868.1| (hypothetical protein PHYBLDRAFT_136624 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026583140|gb|OAD67828.1| hypothetical protein PHYBLDRAFT_136624 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 73.559 bits (179), Expect = 4.296e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0
Query:   14 RLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQ 78
             + A + Y +++G F GVSVEG+++ +R+  NEKFYG R VT +ELLNG + PP AA+ LY AL 
Sbjct:  155 HVSAIYSYSKTKGLFAGVSVEGSVILTRNDTNEKFYG-RKVTAKELLNGSVPPPPAADALYRALN 218          
BLAST of EWM24157.1 vs. NCBI_GenBank
Match: gi|813186331|ref|XP_012207337.1| (hypothetical protein SPRG_21204 [Saprolegnia parasitica CBS 223.65] >gi|641527705|gb|KDO21977.1| hypothetical protein SPRG_21204 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 69.3218 bits (168), Expect = 6.319e-12
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0
Query:    1 ITGGGREGGKEGGRLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQEVMGMEGEGKG 89
            +  G  E G  G  +   + Y  S+G F+G+SVEG+++ +R  VN +FYGK  VT  +LL+G   PP AA+PLY+AL   M +E    G
Sbjct:   15 VAAGAMEAGPGG--IAPCYSYSHSKGLFIGISVEGSVVLARPDVNLEFYGKE-VTAADLLSGRERPPVAAQPLYDALT--MAVESPANG 98          
BLAST of EWM24157.1 vs. NCBI_GenBank
Match: gi|671693081|emb|CDS07812.1| (hypothetical protein LRAMOSA01761 [Lichtheimia ramosa])

HSP 1 Score: 72.0182 bits (175), Expect = 8.324e-12
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 0
Query:    7 EGGKEGGRLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQ 78
             G      + A + Y +SRG F G+SVEG+++  R   N K YG+R VT  ELLNG + PP  A+PLY+ALQ
Sbjct:  142 SGTASINSVAAVYSYSKSRGLFAGISVEGSVILERSDANAKMYGRR-VTTFELLNGTIPPPPQADPLYKALQ 212          
BLAST of EWM24157.1 vs. NCBI_GenBank
Match: gi|511000475|gb|EPB82012.1| (hypothetical protein HMPREF1544_11254 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 72.7886 bits (177), Expect = 8.490e-12
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 0
Query:   14 RLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQ 78
             + A + Y ++RG F GVS+EG+++F+R+  NEK YG+R VT +ELLNG +APP  A+ LY AL 
Sbjct:  155 HISAIYSYSKTRGLFAGVSLEGSVIFTRNDANEKLYGER-VTAKELLNGSVAPPREADSLYRALN 218          
BLAST of EWM24157.1 vs. NCBI_GenBank
Match: gi|299115198|emb|CBN74029.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.7886 bits (177), Expect = 9.204e-12
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 0
Query:   13 GRLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQEV 80
            G + A F Y  S+G F+GVS+E   + +R   N  FYG + V+ +ELL GD  PP AAEPLY+AL+EV
Sbjct:  259 GGVAAAFSYAHSKGVFIGVSLEAATMVTRKDTNRDFYGTK-VSAQELLLGDFPPPKAAEPLYKALEEV 325          
BLAST of EWM24157.1 vs. NCBI_GenBank
Match: gi|1026269902|gb|OAD02973.1| (hypothetical protein MUCCIDRAFT_141954 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 72.4034 bits (176), Expect = 9.628e-12
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 0
Query:   14 RLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQ 78
             + A + Y ++RG F GVS+EG+++F+R+  NEK YG+R VT +ELLNG +APP  A+ LY AL 
Sbjct:  149 HISAIYSYSKTRGLFAGVSLEGSVIFTRNDANEKLYGER-VTAKELLNGSVAPPREADSLYRALN 212          
BLAST of EWM24157.1 vs. NCBI_GenBank
Match: gi|758354128|dbj|GAN03787.1| (DUF500 and SH3 domain protein [Mucor ambiguus])

HSP 1 Score: 72.4034 bits (176), Expect = 1.198e-11
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 0
Query:   14 RLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQ 78
             + A + Y ++RG F GVS+EG+++F+R+  NEK YG+R VT +ELLNG +APP  A+ LY AL 
Sbjct:  149 HISAIYSYSKTRGLFAGVSLEGSVIFTRNDANEKLYGER-VTAKELLNGSVAPPREADSLYRALN 212          
BLAST of EWM24157.1 vs. NCBI_GenBank
Match: gi|1183479833|gb|ORZ03672.1| (hypothetical protein BCR43DRAFT_483763 [Syncephalastrum racemosum])

HSP 1 Score: 71.633 bits (174), Expect = 1.831e-11
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 0
Query:   14 RLEAGFCYGQSRGAFVGVSVEGTLLFSRDRVNEKFYGKRSVTVRELLNGDMAPPTAAEPLYEALQEVMGMEGEGKGGEEPDLLDGGKVRER-REEEGEEEGE 114
             + A + Y ++RG F GVS+EG+++ +R+  NEK YGKR VT +ELLNG +APP  A+ LY AL           G +   L + G +  R R E+GEE   
Sbjct:  156 HVAAIYSYSKTRGLFAGVSLEGSVIITRNDANEKLYGKR-VTAKELLNGTVAPPPEADALYRAL-----------GAKFHSLGNTGAMYTRNRSEDGEENSS 245          
The following BLAST results are available for this feature:
BLAST of EWM24157.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105526|gb|EWM24157.1|1.300e-120100.00ring fyve phd zinc finger-containing protein, part... [more]
gi|299115365|emb|CBN74194.1|8.193e-1349.38conserved unknown protein [Ectocarpus siliculosus][more]
gi|1069963680|ref|XP_018285868.1|4.296e-1250.77hypothetical protein PHYBLDRAFT_136624 [Phycomyces... [more]
gi|813186331|ref|XP_012207337.1|6.319e-1241.57hypothetical protein SPRG_21204 [Saprolegnia paras... [more]
gi|671693081|emb|CDS07812.1|8.324e-1247.22hypothetical protein LRAMOSA01761 [Lichtheimia ram... [more]
gi|511000475|gb|EPB82012.1|8.490e-1250.77hypothetical protein HMPREF1544_11254 [Mucor circi... [more]
gi|299115198|emb|CBN74029.1|9.204e-1250.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|1026269902|gb|OAD02973.1|9.628e-1250.77hypothetical protein MUCCIDRAFT_141954 [Mucor circ... [more]
gi|758354128|dbj|GAN03787.1|1.198e-1150.77DUF500 and SH3 domain protein [Mucor ambiguus][more]
gi|1183479833|gb|ORZ03672.1|1.831e-1141.18hypothetical protein BCR43DRAFT_483763 [Syncephala... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6529rna6529Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications