rna6528, rna6528 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6528
Unique Name	rna6528
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3133
Alignment location	CM002468.1:724174..727667 +

Link to JBrowse

Properties


Property Name	Value
Product	kazal-type serine protease inhibitor domain protein
Orig transcript id	gnl\|cribi\|Naga_100532g5.2621.mrna
Orig protein id	gnl\|cribi\|Naga_100532g5.2621
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:724174..727667 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100532g5	gene6306	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6528	rna6528-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24165.1	cds6512	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:724174..727667+
coding sequence from alignment at CM002468.1:724174..727667+

mRNA sequence

>rna6528 ID=rna6528|Name=rna6528|organism=Nannochloropsis gaditana|type=mRNA|length=3133bp
TGGGGGGGAAAAAGAGTCAAAGTAATGGCCGGTCACGTGCCCATTTTCTC
CAACAAATGCACGTGTCTTTGACACTGTGCCGCGTCCTTTTGTTTCTGTG
TCGTAGGCTGTGGGTGTCATTTGGACGGATGAAAGGAAAATGATCAGGGA
AGGGGGAGACTGTTCATCCCAAAACTCCTAGCAAAAAGGGACTTCAACAA
GTCACCACATGTCCCTCAAGTACGACCCTGCAACCATCGTCTCGCGCTGC
CGCCATACTATTTGTCCTATCTTAAAGCCCATTCAATTCATAATGCGGCT
GCCATTGGTCAGCGCGGGCTTTTTTTCCCTACCTGTGCACGCTTGTGCGT
CCTTCCCCCTTTGTGAGGGCTGCCGCAACACGAGGTTTTCGCTCTTACGC
GCACTCTCTTTTCAAACTTTCTTAATCGGCACGAGACTAGGGAAGTACAG
AGACGCTACGATAGGCAGTATGGTCTCTTCGGTGTGGCTGTTGGCTCTTT
TTTTGTCCTTAGCCCTGCAAAATGTCCTAGCACAGTCGAGGTGTCAGCTA
AACAAGGACTGTGCGGAGGAGCAATTTTGTCTCTTCCCGGATGGGGCGTG
TGAGGGTAGAGGCACCTGTCAGGATGTCCCGTCTTTGTGTACGATGGACT
ACCGCCCTGTATGCGGCTGCGACGGGACAATCTACGGCAATCGCTGCGAA
GCCCTCAGTGCCAGCATGTCGGTACGGATGGCAGGGGAATGCGGCGCCGG
GGAGGAGGATTCCTCCCTCCTTCCCCCCCAAGATGTGGACGAGGCAGGCG
TGCCAGGGCGTGTCTCAGCCAAGAGGAGGGAAGGGGCAATGGGAAGGGGA
AGGACGCGGCGAGATTTGCTCTCGGTGGAAGGCTGGACGTTGTCTAAGGA
GAGCGTGCGTTTGGACACGGACGCCGCGGCGGCAAGCGGGGACCTTGGGG
AAGAAGGGAGGGGCACTTTCTCCCTCCCAGCGGGCCGCCCTCCGACGTGG
GCGGGGGAGGAAGACGAGGAGGAAGCGGCGGAGGGAGGACAGCGGTGTGG
GTCCCGAGGCCTGCTGTCGTGTCCGGAAGGGGCATGGTGCGAGTACGTCG
ACGGTACCTGCGGAGATGGGGACCGGGGCGGGCGGTGTCGCCCCCTGCGG
GTGGCCTGTCCTCGGATCTATGCGCCCGTGTGTGGATGTGACGGGCGGAC
GCATGCCAATACGTGCGTGGCGGGGGCGGCGCGGGTGAGTGTCCGGCATG
CGGGTCCCTGCGAGCGCGTCGACGCCTGGCCTCCGGGTAGGATATCGCCG
GATTTGACCGAGGTGACGGGTCAAGAGGAGGAGAGACCGTCGGCGTTGCG
GCCGGGAGGGTTGCCAGGGCTGGGGGGAAGGCGGGACGGAGGTGCCGAAG
GAGGGCAGGATGGTGATGTGCGGGCGTGCGGTGGCCTTGAAGGGTTGGCT
TGCCCCGTCGGTCATGCCTGTATTTATCCTCCCGGAACCTGCGGAGCGGC
GGACGAGATGGGTATCTGTCTCCCAGCACCCCTAGTCTGCGCCTTGATTT
ACCAGCCCGTGTGCGGGTGCGACGGCCACACCTACGCCAATGACTGCCAC
GCCCACGCTGCCTCTGTCTCCATTGTCGCCCAAGGTCCTTGCTCGCCCCC
CGACCAGGCGCCGGCGGCGGTAGCCGCAGCCACGACGCCTGCCGTGGAAG
AAGCTCCGTTCCCTCCCTCCCTCCCCAGCTCCCCGGTGACGCCTGCAACC
AGCGTGGAAGAGGGTCGCCTGGGGGAAATGGATGGAGGGGTATCATCGGA
GGCTGTGGGCAGTTGGGTAGGGGCGGTGGGGAGGGCGGTGTCTCAAAAGT
GGCAAGGAAGGTTGGGGGAAGGTGCAGTTGAGGAAGGAAGGGGAAGGAAG
AGGTGATGCAATGAACAGACGATGCTTGAGAGCCGGTACTGTTCGTCGAA
AGGAAGAGGGGCGTGGAAGGCAGGGCGGGCGTGCGGAATTGGGGTGACGG
GATGTTGGTTGAACAAATAGGAGGGACAAAAAAGGAGGAGAGGCGCCCCT
GCTGAATTTGAAAGGGCAGTGAACCCGCAATTGGAAGCATGAAGCGGGCA
TTCAAGTGACGTTACACGCCGTGCTTCTGAGTAAGGCACGGAGCGGGGCC
GGGCATGTATAAATGTGGAGGTTTGATAGGGTTTTTATATCCTCGCGGAA
GGAGAGAGGTCTCTCGTGACCATTCTGGCAAAGGAAACCTCAGCTATCCC
GACAATCGACGCTGAAATTTGTCAAGCCCTTCGCAGGGTAATATTTTGTT
CTTTTGGAGCACGTTTCGGACCACGTTTCCATCGGTAGGGGGCGTCCTGG
ACACTTTTATGTTCTTCAAACTGAATGAGAGGGAGCACTTCAACAGGGGA
GACAACCAGGCGGGGGAGGTTTTTTCTGACACAGCTTAAATATCACGGGT
CCTGGCCGTCAGCCGCTTATATTAGAGATATGCATGCGATATATATCCAA
TATATAGCTAGATTTTCATCTATGCTGCCGCAGAAGGCGCCATTTTGCAT
CCCAAGACCACTGAAATGACACTTTATCCATGTTCAGCCCCCCCGGTCCC
GACCTCCCTCGACATCCTTTTCCTTTCATTCCCCCCCCCCTTCCCTGCAC
TAATACTACGCATGACTCACGGTCAAACAGAAATAAGCCATGGAGACGCC
AGAAGCACCACGGACCCCGCCGTTGTCCGTCAGGCCCCGTCCTCGGTGGG
TGCACGATATAGAGGCTGTTGTCTGTCAAGAATGCCGCGCGCCATTTAAC
CCTCTGACCCGTCGAAGACACCACTGCCGTGTTTGTGGACGTGTTCTATG
CCTAGCATGCACGCGACAGCAACTCTTGATCCCGTCTTCTGAGCTGATCG
CTCCTCGAAAGATGCCAGCGGCCGCAATGCAACCCTTGAGTGTTGATCCT
TACATCCCCCAAAGAGCATGCCGGGCATGCGCAAGCCATCTAGCTCCTCT
GCAGGCCACACTCCAGCAATCCAGCAGCAAGGCCACGCAAAGGATTCACG
TGGAGCGTCATTCCTGGGCGCGGTATTTCAACCCTCCTTTCCAATCGGCA
CTGGAGGAGGAGATCCGAAAAGCCACATACTCG

protein sequence of rna6528

>rna6528-protein ID=rna6528-protein|Name=rna6528|organism=Nannochloropsis gaditana|type=polypeptide|length=460bp
MHHKRKSAVAGRGGVSGLPLYLLRRALSCIDVQFTRDRCTMDYRPVCGCD
GTIYGNRCEALSASMSVRMAGECGAGEEDSSLLPPQDVDEAGVPGRVSAK
RREGAMGRGRTRRDLLSVEGWTLSKESVRLDTDAAAASGDLGEEGRGTFS
LPAGRPPTWAGEEDEEEAAEGGQRCGSRGLLSCPEGAWCEYVDGTCGDGD
RGGRCRPLRVACPRIYAPVCGCDGRTHANTCVAGAARVSVRHAGPCERVD
AWPPGRISPDLTEVTGQEEERPSALRPGGLPGLGGRRDGGAEGGQDGDVR
ACGGLEGLACPVGHACIYPPGTCGAADEMGICLPAPLVCALIYQPVCGCD
GHTYANDCHAHAASVSIVAQGPCSPPDQAPAAVAAATTPAVEEAPFPPSL
PSSPVTPATSVEEGRLGEMDGGVSSEAVGSWVGAVGRAVSQKWQGRLGEG
AVEEGRGRKR

mRNA from alignment at CM002468.1:724174..727667+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6528 ID=rna6528|Name=rna6528|organism=Nannochloropsis gaditana|type=mRNA|length=3494bp|location=Sequence derived from alignment at CM002468.1:724174..727667+ (Nannochloropsis gaditana)
TGTGCCGCGTCCTTTTGTTTCTGTGTCGTAGGCTGTGGGTGTCATTTGGA
CGGATGAAAGGAAAATGatcagggaagggggagactGTTCATCCCAAAAC
TCCTAGCAAAAAGGGACTTCAACAAGTCACCACATGTCCCTCAAGTACGA
CCCTGCAACCATCGTCTCGCGCTGCCGCCATACTATTTGTCCTATCTTAA
AGCCCATTCAATTCATAATGCGGCTGCCATTGGTCAGCGCgggctttttt
tccctaccTGTGCACGCTTgtgcgtccttccccctttgtGAGGGCTGCCG
CAACACGAGGTTTTCGCTCTTACGCGCACTCTCTTTTCAAACTTTCTTAA
TCGGCACGAGACTAGGGAAGTACAGAGACGCTACGATAGGCAGTATGGTC
TCTTCGGTGTGGCTGTTGGCTCTTTTTTTGTCCTTAGCCCTGCAAAATGT
CCTAGCACAGTCGAGGTAAGTGAGACGAAGGGATTATGTCTAGTACGGGC
AGTTCCCCCTCCAGACATGAAGAGATAGAGGCTCAAGTCATACTTCTGTC
TTACCGTTAAATGTGCTTGGTAGCCTATTCCATGGAAGTGAGCCCAcgga
ctcctccctcttcccgtcgcGCGCCTGGAGGGCACAAGTTTGTTCGCTCG
CTCAAGAAGTGACTCGCACTCCCCCCCAATCCTTTGTCCATCCTTGCCTG
TGGCTCTTCCAGGTGTCAGCTAAACAAGGACTGTGCGGAGGAGCAATTTT
GTCTCTTCCCGGATGGGGCGTGTGAGGGTAGAGGCACCTGTCAGGATGTC
CCGTCTTTGTaagtaaggagggagggagggagggaaggagggagggagag
aaggtgggagggaagaaaggagggaaaagatgagaTGCACCATAAGCGAA
AAAGTGCTGTAgccggacgggggggcgTGTCGGGGCTGCCTCTTTATCTG
TTGAGGCGCGCGTTGTCATGCATTGACGTGCAATTTACGCGGGACAGGTG
TACGATGGACTACCGCCCTGTATGCGGCTGCGACGGGACAATCTACGGCA
ATCGCTGCGAAGCCCTCAGTGCCAGCATGTCGGTACGGATGGCAGGGGAA
TGCggcgccggggaggaggattcctccctccttcccccccaagaTGTGGA
CGAGGCAGGCGTGCCAGGGCGTGTCTCagccaagaggagggaaggggcaa
tgggaaggggaaggacgcggcGAGATTTGCTCTCGGTGGAAGGCTGGACG
TTGTCTAAGGAGAGCGTGCGTTTGGACACGGACGCCGCGGCGGCAAGCGG
GGACcttggggaagaagggaggggcactttctccctcccagcggGCCGCC
CTCCgacgtgggcgggggaggaagacgaggaggaagcggcggagggagga
cagcggTGTGGGTCCCGAGGCCTGCTGTCGTGTCCGGAAGGGGCATGGTG
CGAGTACGTCGACGGTACCTGCGGAGATGGGGACCGGGGCGGGCGGTGTC
GCCCCCTGCGGGTGGCCTGTCCTCGGATCTATGCGCCCGTGTGTGGATGT
GACGGGCGGACGCATGCCAATACGTGcgtggcgggggcggcgcgggTGAG
TGTCCGGCATGCGGGTCCCTGCGAGCGCGTCGACGCCTGGCCTCCGGGTA
GGATATCGCCGGATTTGACCGAGGTGAcgggtcaagaggaggagagaccg
TCGGCGTTGCGGCCGGGAGGGTTGCCAGGgctggggggaaggcgggacgg
aggtgccgaaggagggcaggatggTGATGTGCGGGCGTGCGGTGGCCTTG
AAGGGTTGGCTTGCCCCGTCGGTCATGCCTGTATTTATCCTCCCGGAACC
TGCGGAGCGGCGGACGAGATGGGTATCTGTCTCCCAGCACCCCTAGTCTG
CGCCTTGATTTACCAGCCCGTGTGCGGGTGCGACGGCCACACCTACGCCA
ATGACTGCCACGCCCACGCTGCCTCTGTCTCCATTGTCGCCCAAGGTCCT
TGCTCGCCCCCCGACCAGGCGCCGGCGGCGGTAGCCGCAGCCACGACGCC
TGCCGTGGAAGAAgctccgttccctccctccctccccagctccCCGGTGA
CGCCTGCAACCAGCGTGGAAGAGGGTCGCCTGGGGGAaatggatggaggg
gtaTCATCGGAGGCTGTGGGCAGTTGGGtaggggcggtggggagggcggt
gtcTCAAAAGTGGCAAGGAAGGTTGGGGGAAGGTGCAgttgaggaaggaa
ggggaaggaagaggtgatGCAATGAACAGACGATGCTTGAGAGCCGGTAC
TGTTCgtcgaaaggaagaggggcgtggaaggcagggcgggcgtgCGGAAT
TGGGGTGACGGGATGTTGGTTGAACAAATAGGAGGgacaaaaaaggagga
gaggcgccCCTGCTGAATTTGAAAGGGCAGTGAACCCGCAATTGGAAGCA
TGAAGCGGGCATTCAAGTGACGTTACACGCCGTGCTTCTGAGTAAGGCAC
GGAGCGGGGCCGGGCATGTATAAATGTGGAGGTTTGATAGGGTTTTTATA
TCCTcgcggaaggagagaggtctCTCGTGACCATTCTGGCAAAGGAAACC
TCAGCTATCCCGACAATCGACGCTGAAATTTGTCAAGCCCTTCGCAGGGT
AATATTTTGTTCTTTTGGAGCACGTTTCGGACCACGTTTCCATCGGTAGG
GGGCGTCCTGGACACTTTTATGTTCTTCAAACTGAATGAGAGGGAGCACT
TCAACAGGGGAGACAaccaggcgggggaggtttTTTCTGACACAGCTTAA
ATATCACGGGTCCTGGCCGTCAGCCGCTTATATTAGAGATATGCATGCGA
TATATATCCAATATATAGCTAGATTTTCATCTATGCTGCCGCAGAAGGCG
CCATTTTGCATCCCAAGACCACTGAAATGACACTTTATCCATGTTCAGCC
CCCCCGgtcccgacctccctcgacatccttttcctttcattccccccccc
cttccctgcacTAATACTACGCATGACTCACGGTCAAACAGAAATAAGCC
ATGGAGACGCCAGAAGCACCACGGACCCCGCCGTTGTCCGTCAGGCCCCG
TCCTCGGTGGGTGCACGATATAGAGGCTGTTGTCTGTCAAGAATGCCGCG
CGCCATTTAACCCTCTGACCCGTCGAAGACACCACTGCCGTGTTTGTGGA
CGTGTTCTATGCCTAGCATGCACGCGACAGCAACTCTTGATCCCGTCTTC
TGAGCTGATCGCTCCTCGAAAGATGCCAGCGGCCGCAATGCAACCCTTGA
GTGTTGATCCTTACATCCCCCAAAGAGCATGCCGGGCATGCGCAAGCCAT
CTAGCTCCTCTGCAGGCCACACTCCAGCAATCCAGCAGCAAGGCCACGCA
AAGGATTCACGTGGAGCGTCATTCCTGGGCGCGGTATTTcaaccctcctt
tccaatcggcactggaggaggagatccgaAAAGCCACATACTCG

Coding sequence (CDS) from alignment at CM002468.1:724174..727667+

>rna6528 ID=rna6528|Name=rna6528|organism=Nannochloropsis gaditana|type=CDS|length=1383bp|location=Sequence derived from alignment at CM002468.1:724174..727667+ (Nannochloropsis gaditana)
aTGCACCATAAGCGAAAAAGTGCTGTAgccggacgggggggcgTGTCGGG
GCTGCCTCTTTATCTGTTGAGGCGCGCGTTGTCATGCATTGACGTGCAAT
TTACGCGGGACAGGTGTACGATGGACTACCGCCCTGTATGCGGCTGCGAC
GGGACAATCTACGGCAATCGCTGCGAAGCCCTCAGTGCCAGCATGTCGGT
ACGGATGGCAGGGGAATGCggcgccggggaggaggattcctccctccttc
ccccccaagaTGTGGACGAGGCAGGCGTGCCAGGGCGTGTCTCagccaag
aggagggaaggggcaatgggaaggggaaggacgcggcGAGATTTGCTCTC
GGTGGAAGGCTGGACGTTGTCTAAGGAGAGCGTGCGTTTGGACACGGACG
CCGCGGCGGCAAGCGGGGACcttggggaagaagggaggggcactttctcc
ctcccagcggGCCGCCCTCCgacgtgggcgggggaggaagacgaggagga
agcggcggagggaggacagcggTGTGGGTCCCGAGGCCTGCTGTCGTGTC
CGGAAGGGGCATGGTGCGAGTACGTCGACGGTACCTGCGGAGATGGGGAC
CGGGGCGGGCGGTGTCGCCCCCTGCGGGTGGCCTGTCCTCGGATCTATGC
GCCCGTGTGTGGATGTGACGGGCGGACGCATGCCAATACGTGcgtggcgg
gggcggcgcgggTGAGTGTCCGGCATGCGGGTCCCTGCGAGCGCGTCGAC
GCCTGGCCTCCGGGTAGGATATCGCCGGATTTGACCGAGGTGAcgggtca
agaggaggagagaccgTCGGCGTTGCGGCCGGGAGGGTTGCCAGGgctgg
ggggaaggcgggacggaggtgccgaaggagggcaggatggTGATGTGCGG
GCGTGCGGTGGCCTTGAAGGGTTGGCTTGCCCCGTCGGTCATGCCTGTAT
TTATCCTCCCGGAACCTGCGGAGCGGCGGACGAGATGGGTATCTGTCTCC
CAGCACCCCTAGTCTGCGCCTTGATTTACCAGCCCGTGTGCGGGTGCGAC
GGCCACACCTACGCCAATGACTGCCACGCCCACGCTGCCTCTGTCTCCAT
TGTCGCCCAAGGTCCTTGCTCGCCCCCCGACCAGGCGCCGGCGGCGGTAG
CCGCAGCCACGACGCCTGCCGTGGAAGAAgctccgttccctccctccctc
cccagctccCCGGTGACGCCTGCAACCAGCGTGGAAGAGGGTCGCCTGGG
GGAaatggatggaggggtaTCATCGGAGGCTGTGGGCAGTTGGGtagggg
cggtggggagggcggtgtcTCAAAAGTGGCAAGGAAGGTTGGGGGAAGGT
GCAgttgaggaaggaaggggaaggaagaggtga

Synonyms

Publications