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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100532g4.2618.mrna |
| Orig protein id | gnl|cribi|Naga_100532g4.2618 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:721937..723731 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6525 ID=rna6525|Name=rna6525|organism=Nannochloropsis gaditana|type=mRNA|length=1064bp
AAGGCAATCAATTGCTTACCACGAGCAAAAAAATGGTGGTTTGGGTTGAG
CTGGCTGTGAACAAGAAGTGTGACGTTCATCCGGTGGGGTGGTACAGATT
GACACTTTTCAAAATTTCAAATGGTCAGATATCTGTCCTGGTTTTCTTCT
CGACGCAGAGGCTGCTAGCGTTCTTTCTCCCGATTGTGATGGAAACTGCA
CAGCGAGTATCCTTCCATGCTGAAGTGAGTCGAACTTTGGTAACTCATGC
TGGGGCTGTCTTCTTACTATTTGTGTTAAAATTCGGATCGTTTCAATCAA
AGGCTTGCACGTGAAGATTGCTCAAGTCACGCGGCAGTCGTCGTGTATAG
CTTGCTTCCCTGCAACACCTCAACTTACCTCTTTCGAACACAACATACAG
TCCCATCAAGCACTATTTTACGTACGATAACCATGCGGGTCCTCTTCTTC
ACATGTACCCTTCTCCTTTCCCTTCAATCAATTTTGGGGTTCCTGATTCC
CCCCGCACCCTCTCCTCGCCCCCGCATATCCTCCTCCTTCCCGCTTCGTT
CCTCGATGGCCCCCGGCGACGAAGCTGCAGAGCGAAGCGCAGCCGTAGAA
AAAATCAAGTCTTTAGTGGGCAATAATAAAGTCATGCTTTTTATGAAGGG
CTCGAAACTTTTTCCGCAATGCGGATTCTCCAACACAGCAGTCTCTATTC
TTCGCGCTTGCGACGCCGAATTTGAAACATTTGATGTCTTAAGCGACTAT
TTGGTACGGGAGGAGATCAAGAATTACAGTTCGTGGCCTACCATTCCTCA
GTGCTACGTCAACGGTGAATTCGTGGGGGGCAGTGACATCCTTTTGGAGA
TGTTCGAAAGCGGGGAGCTGGAGAAGACCCTAGCGGAATTAAAAAAATGA
AAGTACTAGGAAAATTTAACCAGTTGAGCTTGAACCCATTCCCTTTCGCT
TCCGGGATGGTGGTGCAAAAGGTGGTCGTTCGAGGGTGACGGAGGAAAAT
TCCGGAGACAAAAGGAAAAGTTTACCCTGATACGAAGCGATGCACGGCCA
TGGGTGGCTTTATT back to topprotein sequence of rna6525 >rna6525-protein ID=rna6525-protein|Name=rna6525|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MTRQLSMVCAMVFAYLCLSSGQHVKQSSSQVPVSSAVEGIEGAGGVSWKT
VTGKIDDKGTTTIEVEVTNKNNMAMEALTAPANGKYDEEVMYTATDKVGA
AAGLVNRPNRGTGDRAVEVEEGDKVGAAAGLVNRPNRGTGNRAVEVEEGD
KVGAAAGLVNRPNRGTGGRAVEVEEKAAEQETGGARRLRGA back to topmRNA from alignment at CM002468.1:721937..723731+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6525 ID=rna6525|Name=rna6525|organism=Nannochloropsis gaditana|type=mRNA|length=1795bp|location=Sequence derived from alignment at CM002468.1:721937..723731+ (Nannochloropsis gaditana)
GAAGCCTAACGCATACACTCACATAAGCTTTGTGCTCTGCTTGTACGTTG
TAAAAAAAGCCGTGGAAAGACGCAGGAGCTGTAAGGGACGTATCTATTCC
TGAACCTTCCTGACCTTTCCGAATTTGTTCGAATATTTACTAATCTGGGC
CCCAATAATCTTGCATCACAGCACTCTATCAACTCAAATGACGCGTCAAC
TTTCCATGGTATGCGCCATGGTGTTCGCCTACCTTTGCCTTTCTTCAGGT
CAACATGTCAAGGTGAGCAACAAAATATTTTTTATGCCAGAAGACGTCAA
ACTCTCTTCAGATGATTATACGGACGTCCGCAGGAGTCATCACTTCTCTA
TGGATGCAAAGCAAAAACAACAATAAAAAGCATCTCACGCTGCTCTCACG
CCCTCGGCGGGGACTCTTCGCATAACAGCAGAGCTCCTCCCAAGTTCCTG
TCAGTAGTGCTGTTGAAGGGATtgaaggggccgggggcgtcTCTTGGAAA
ACTGTCACAGGGAAAATCGATGATAAGGGCACCACTACAATCGAAGTGGA
GGTCACGAACAAGAATAACATGGCGATGGAAGCACTCACGGCCCCCGCAA
ACGGAAAGTatgacgaggaggtgatgTACACTGCAACCGACAAGGTGGGG
GCTGCGGCAGGGCTTGTGAACCGTCCCAACCGCGGCACGGGCGATAGGGc
tgtcgaggtggaggagggagacaaggtggGGGCTGCGGCAGGGCTTGTGA
ACCGTCCCAACCGCGGCACGGGCAACAGGGctgtcgaggtggaggaggga
gacaaggtggGGGCTGCGGCAGGGCTTGTGAACCGTCCCAACCGCGGCAC
GGGCGGTAGGGCTGTcgaggtggaagagaaggcggcaGAGCAAGAGACTG
GGGGGGCTCGTCGATTGCGTGGGGCTTAGGATGCGTTGTGTTCCGTAACG
GACGGCTTCGCATTTCATTATGATGCAAATGGACAAAGTCGCAAAGCTTC
AAGTCAACACGAATTGGGGATGTGAGCGACAAATACATGTAAAATATGCA
GTGTAAACAATAAAATTTTCATCTTTGTGCGATGTACCTATACATACTCA
AACAACGGTGACGCACGCATGCAATAAAGCAATGGAGAAAATCGTGGCTC
AATACGCAGGCCTGTCTGATTCTTAGGATACTTTTTAGATCAAGATATGG
CACCAATCGAATAAGGACAAGTTGTGAGGAATGAAAAGGAGAATCGAAGT
TAGCAGTGGCGAGACCAGAACAATTATGGGCGCAGAAAATTCACGAGAAA
ATACCGCGCACGTTGTTGTTTTCCATCGCTTGTTTTCCGGTGGATCTGAA
GGGGGGGACTTTAAGATGGATTGTCATGTACACAGAAGCAGCCAGGGAGT
CAAGCGGATCTCCAAAAACCACGATTTCTACCTCCAATCCACGATTACGT
CCTCGATGCAGGATAATATTTATTTCATTCAAGAATCTTTTTACAAGAAT
GTGGACAAAATAAGACTCGAAAACAAAAGGGGACTCTCGATCAAAAGTTT
CCAAAGCGCCGGATGAATTCCCAGTaggcgaggagggattgTATCATCAG
CGTCAACACCGTGCCCGCCTTCTGCTTGTTGGTCCGGCAACACGTTTCCG
GTATTGAGCTGCTTGCTTTACACACATTTCAACTTCTGTCACCATCATGC
CCCGGGAATATGTTTCAAGGAAGGCTCTCACCGCCAAGAAACCATGAGGA
ACTTCAAAGATAACGAAGAAAAGAATGTTGATGTACGTTTCAGCA back to topCoding sequence (CDS) from alignment at CM002468.1:721937..723731+ >rna6525 ID=rna6525|Name=rna6525|organism=Nannochloropsis gaditana|type=CDS|length=1152bp|location=Sequence derived from alignment at CM002468.1:721937..723731+ (Nannochloropsis gaditana)
ATGACGCGTCAACTTTCCATGGTATGCGCCATGGTGTTCGCCTACCTTTG
CCTTTCTTCAGGTCAACATGTCAAGCAGAGCTCCTCCCAAGTTCCTGTCA
GTAGTGCTGTTGAAGGGATtgaaggggccgggggcgtcTCTTGGAAAACT
GTCACAGGGAAAATCGATGATAAGGGCACCACTACAATCGAAGTGGAGGT
CACGAACAAGAATAACATGGCGATGGAAGCACTCACGGCCCCCGCAAACG
GAAAGTatgacgaggaggtgatgTACACTGCAACCGACAAGGTGGGGGCT
GCGGCAGGGCTTGTGAACCGTCCCAACCGCGGCACGGGCGATAGGGctgt
cgaggtggaggagggagacaaggtggGGGCTGCGGCAGGGCTTGTGAACC
GTCCCAACCGCGGCACGGGCAACAGGGctgtcgaggtggaggagggagac
aaggtggGGGCTGCGGCAGGGCTTGTGAACCGTCCCAACCGCGGCACGGG
CGGTAGGGCTGTcgaggtggaagagaaggcggcaGAGCAAGAGACTGGGG
GGGCTCGTCGATTGCGTGGGGCTTAGATGACGCGTCAACTTTCCATGGTA
TGCGCCATGGTGTTCGCCTACCTTTGCCTTTCTTCAGGTCAACATGTCAA
GCAGAGCTCCTCCCAAGTTCCTGTCAGTAGTGCTGTTGAAGGGATtgaag
gggccgggggcgtcTCTTGGAAAACTGTCACAGGGAAAATCGATGATAAG
GGCACCACTACAATCGAAGTGGAGGTCACGAACAAGAATAACATGGCGAT
GGAAGCACTCACGGCCCCCGCAAACGGAAAGTatgacgaggaggtgatgT
ACACTGCAACCGACAAGGTGGGGGCTGCGGCAGGGCTTGTGAACCGTCCC
AACCGCGGCACGGGCGATAGGGctgtcgaggtggaggagggagacaaggt
ggGGGCTGCGGCAGGGCTTGTGAACCGTCCCAACCGCGGCACGGGCAACA
GGGctgtcgaggtggaggagggagacaaggtggGGGCTGCGGCAGGGCTT
GTGAACCGTCCCAACCGCGGCACGGGCGGTAGGGCTGTcgaggtggaaga
gaaggcggcaGAGCAAGAGACTGGGGGGGCTCGTCGATTGCGTGGGGCTT
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