EWM24162.1, cds6509 (CDS) Nannochloropsis gaditana

Overview
NameEWM24162.1
Unique Namecds6509
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:722124..722198 +
Alignment locationCM002468.1:722365..722865 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24162.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100532g4.2618.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:722124..722198 +
CM002468.1supercontigCM002468.1:722365..722865 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24162.1 vs. NCBI_GenBank
Match: gi|585105533|gb|EWM24162.1| (hypothetical protein Naga_100532g4 [Nannochloropsis gaditana])

HSP 1 Score: 380.948 bits (977), Expect = 1.365e-133
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0 
Query:    1 MTRQLSMVCAMVFAYLCLSSGQHVKQSSSQVPVSSAVEGIEGAGGVSWKTVTGKIDDKGTTTIEVEVTNKNNMAMEALTAPANGKYDEEVMYTATDKVGAAAGLVNRPNRGTGDRAVEVEEGDKVGAAAGLVNRPNRGTGNRAVEVEEGDKVGAAAGLVNRPNRGTGGRAVEVEEKAAEQETGGARRLRGA 191
            MTRQLSMVCAMVFAYLCLSSGQHVKQSSSQVPVSSAVEGIEGAGGVSWKTVTGKIDDKGTTTIEVEVTNKNNMAMEALTAPANGKYDEEVMYTATDKVGAAAGLVNRPNRGTGDRAVEVEEGDKVGAAAGLVNRPNRGTGNRAVEVEEGDKVGAAAGLVNRPNRGTGGRAVEVEEKAAEQETGGARRLRGA
Sbjct:    1 MTRQLSMVCAMVFAYLCLSSGQHVKQSSSQVPVSSAVEGIEGAGGVSWKTVTGKIDDKGTTTIEVEVTNKNNMAMEALTAPANGKYDEEVMYTATDKVGAAAGLVNRPNRGTGDRAVEVEEGDKVGAAAGLVNRPNRGTGNRAVEVEEGDKVGAAAGLVNRPNRGTGGRAVEVEEKAAEQETGGARRLRGA 191
[Close]
BLAST of EWM24162.1 vs. NCBI_GenBank
Match: gi|585105534|gb|EWM24163.1| (hypothetical protein Naga_100532g4 [Nannochloropsis gaditana])

HSP 1 Score: 374.015 bits (959), Expect = 6.706e-131
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0 
Query:    1 MTRQLSMVCAMVFAYLCLSSGQHVKQSSSQVPVSSAVEGIEGAGGVSWKTVTGKIDDKGTTTIEVEVTNKNNMAMEALTAPANGKYDEEVMYTATDKVGAAAGLVNRPNRGTGDRAVEVEEGDKVGAAAGLVNRPNRGTGNRAVEVEEGDKVGAAAGLVNRPNRGTGGRAVEVEEKAAEQETGGARRLRGA 191
            MTRQLSMVCAMVFAYLCLSSGQHVK SSSQVPVSSAVEGIEGAGGVSWKTVTGKIDDKGTTTIEVEVTNKNNMAMEALTAPANGKYDEEVMYTATDKVGAAAGLVNRPNRGTGDRAVEVEEGDKVGAAAGLVNRPNRGTGNRAVEVEEGDKVGAAAGLVNRPNRGTGGRAVEVEEKAAEQETGGARRLRGA
Sbjct:    1 MTRQLSMVCAMVFAYLCLSSGQHVK-SSSQVPVSSAVEGIEGAGGVSWKTVTGKIDDKGTTTIEVEVTNKNNMAMEALTAPANGKYDEEVMYTATDKVGAAAGLVNRPNRGTGDRAVEVEEGDKVGAAAGLVNRPNRGTGNRAVEVEEGDKVGAAAGLVNRPNRGTGGRAVEVEEKAAEQETGGARRLRGA 190
The following BLAST results are available for this feature:
BLAST of EWM24162.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105533|gb|EWM24162.1|1.365e-133100.00hypothetical protein Naga_100532g4 [Nannochloropsi... [more]
gi|585105534|gb|EWM24163.1|6.706e-13199.48hypothetical protein Naga_100532g4 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6525rna6525Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications