rna6522, rna6522 (mRNA) Nannochloropsis gaditana

Overview
Namerna6522
Unique Namerna6522
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2353
Alignment locationCM002468.1:717763..718708 +

Link to JBrowse

Properties
Property NameValue
ProductHly-III-related protein
Orig transcript idgnl|cribi|Naga_101108g2.4692.mrna
Orig protein idgnl|cribi|Naga_101108g2.4692
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:717763..718708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101108g2gene6302Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6522rna6522-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24168.1cds6506Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6522 ID=rna6522|Name=rna6522|organism=Nannochloropsis gaditana|type=mRNA|length=2353bp
ACGGCGCTAGAATGACCAGGTGCAGGCTTCATATCTGTAACAGTATGCTT
GAAAATTAAGACAACCACCTTTTCCCCTCCTACAGTGGATCTGCCGCGCT
TATTCAAGAGACAATTCAAGCGGATAATTCTTGTTGACCGCATCAATGCT
CTAACCCATGCATAAAAATGAATTTTCGAAGACTAATGGGGTGCAAGAAG
AGGAAGAGGATGGCACGAACGCGGAGATTGTGTCCATTTTGTTGTCGGCC
GGATTGACCTCCCCACCCCCGTCGCCACAACCCATCTCTCCCCCGCCATT
GCAAGTACGTCGCACATTTAGCCCCTACGCTGGCCCAAGTCGCGGAAATC
AGATGCCTAGTAGCACATTCGGAGGGAACATGGACCGTCCCTGCGCAAGT
GTTCCCTCGCTCAAGGAGTTGCCAGATTATTGCCGCCCCAACAGCACTGA
TCCTGCATCAGTCCGTCCCCCACCTGCCTACCGGCACACACCGACCCCTC
CCACTTTTCTTCAAAAATCCCCATCCCTGCCCAAAATTGGAATGCATGGC
TCCATTGCTTCCTCCATGGTGTTGGCAGGCGCCACCCTGGGGCGGGGGGC
TTCGCACGACAGCCTTTGCCAGCTCGCAACCGTGCTGCGGGAGGCCAACG
ATGCCATCATTGGGGGAGATGTGTCGGGACAAGGAATAAAGAGGCATCCC
ACGCAAACATCGGAGCAGGAACGGGACGACAAGGAGGAGGGGTTGGGCAA
GGAGGAACGGCAGCCCAGCCCTGGTGAGGACGGCGCACACCAGCCTCTGT
CGCCGTCTCCGACCCTCCCAACTCATCACGGACCCCCCACAGACCCCACA
GCCTCTTGCCCGACCGATAGCATCAGTCCCTGTCACCACCCACCCACGCT
CCTCCCTCCCTCCCTCCCTGCTCGTCTCCGTCCATTGCCCCTGGGCCTCG
GCCAGCTCCGTCTTCTTTGCTTTGGTGGCTACGCTTTCCTCCTCCTTGCC
ATGTACGGCATCTCCCCTTTCTTCCAGGAGGACGCACAGAGCCGCCTCGG
TCTTCCCTCCTCCCTGGTCGGCCTCACCTTCTCCCTCTCGGCCCTCACCT
CCATGCTCATCACGCCCCTAGCCGCCCATCTCTGTCAAGCCTTTGGCCGT
TACCGGACCCTATTCCTCGGCTATGTCCTCGCCCTCCTCGCTAACGTTGG
CTTCGCCCTCTCCCGCACCTCCCCTTCCCTTCTCTCCTTTCGATCTGCCC
AGGGTCTGGCCATGGGCCTGGTGGCGGTGGCCTCCATGACCCTTCTGATT
GCCGGCGCCCCCGACATCGTCAAGGAGATGGGGTTGCAAGAGTTGGTCAT
CTCCGTCACCTTAATCATCGCGCCCATCCTGGGCGGTGGCTTCTATGAAG
TGATGTCCGTGGAGAGGACGTATCTGGCCTTGAGTGCACCGCTCTTGGGG
ATGGTGGTGGTGTTGGGAGGGATGTTGTGGTCAGTGAGGAGAATGGAGGG
GAGGAAAGAGGAAGGGAGGAAGCGTTGTGCAGACGGGGGGGGGTTGAAGA
TGGTTGTGATGGATCGGGAGGAAGGAAACGGAGGCGTCCGAATGTGGGTG
CTGGACCAAGGAGGGGAGGAAGGGAAGGAGGAAGGGTGGCAGGGGGGAAA
ACAAACGGCGCCCGTTTCCTTCGCCTCTATCCCATCCCTGGTGGAGAGGG
AGGAGGAAGGGAGGGAGGAGCAGGGGGAGGAGGAGATGGGAGTGGAGTGG
GGGGAAGGAGAAGGGAGGGGAGGGTGGATTGGAAAGAGGGAGGAAGGGAG
GGAGAGGGAGTCTTGGGGCTTAGACGGAGGCGACGGGTTGCGAAAGAGGT
GGGAGGTAGCGCACGGCGGAGGTGATGGGAAGGGAGGAACATCGGTGAGA
GACGCAGAAAGGCCAGGAAGGAACAACACGCAGGTCTGGCGCCACCCCCG
CGTCCTGCTCATCGCCGTTGCCATCACCTTAACCTTCGCGAGCCAAGGAT
TCCTCGCCCTCTCCTTCGGAGTGCACTCCCGGAACCTCCTGGGCCTGGCC
TCCGGGGCCGTCGGCCTTTTTTACTCGGCCTTTTCCCTCCCCTACGCCCT
CATGGGCGTGGTCATCGGGCCATTGGCCCGACGTGTCGCGTCTTCCACCC
TCATCACGTACGGAACCCTCCTCGAAGCCCTGGGACTCCTCCTCCTTGGT
CCTCCCCCGGCCCTCCTCCCCCTCTCCTCGCCCCCTTCCTCCCCCCCTTC
TCCCCCCCTTCCTCCCTCGTGTGGTCCTTCACCCTCCTGGGGGATGCTCT
GCCTCGGGGGTCGGGATGGGCCTCATCACAATGCCCGCCATCGACGCCAT
GCG
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protein sequence of rna6522

>rna6522-protein ID=rna6522-protein|Name=rna6522|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MAPNTENMPTSSSADTRPGPARVNNEGMGKNTIDPARTRTDRKEGFYVEA
PSRASLVTATLRRGCCGCPPVRHVRNAPSFQHIPHITIGYRVGFSLRHCL
ASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILT
FLLSAVACLSFSTCYHTFGCMSVGPRPPPQALL
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mRNA from alignment at CM002468.1:717763..718708+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6522 ID=rna6522|Name=rna6522|organism=Nannochloropsis gaditana|type=mRNA|length=946bp|location=Sequence derived from alignment at CM002468.1:717763..718708+ (Nannochloropsis gaditana)
TTTTAGGTGGCCGGGGCTGTCAAGGCTTAAATATTCAGATCGGCAGACTG
GTCGGGTTGGCGCGTACGTAGGCCATGGCCCCCAACACTGAAAATATGCC
TACAAGCAGCAGTGCCGACACCCGTCCCGGCCCCGCCAGAGTGAATAACG
AGGGTATGGGCAAGAATACAATTGATCCTGCACGCACGCGCACtgacagg
aaagaaggcttCTATGTCGAAGCTCCGTCCCGTGCTTCCCTTGTAACCGC
GACTCTGAGGCGGGGATGCTGCGGCTGTCCACCCGTTCGACATGTGCGCA
ACGCACCTTCCTTCCAACACATCCCGCACATCACCATCGGATACCGCGTC
GGCTTTTCTCTCCGACATTGCCTGGCGGtacgcaggaggagaagaaggga
aaaagggggaccAGGTCTATAGGTGGGGAGATGAACTGCGAGTGGCAACT
TGCTTGGAATGTAGGCGCGCAACGATGACTTTGTGATCTGCACAAGGAAT
AAAGCTTATTTCTCGTCCATGATACCCTCAAcgttcctctttccttctcc
ctccccagtcTCTCTTCACATTCCACAACGAGTCCATCAATATTTGGTCG
CATCTTCTGGGAACAATGTACGTCTTCTCGGTCCTCGTTTcgttcctccg
cctcgagcGTCTCCACCCCAACGTGGACCCCATCGAATACAAAgccatcc
tcaccttcctcctgagcGCCGTGGCTTGCCTCAGTTTTAGCACGTGCTAC
CATACCTTTGGGTGCATGTCGGtaggtcctcgtcctcccccacaggCCCT
TCTTTAGTTGAGTACGACAGATCTCTATGCTTGCACTGCAGTCTATGAAG
TCGTATCGATGTATATCTGTGGCAAATGGaactctttccccccctctgaG
TCCGCAGGGCGCGTTCTCGCCCCCTATCTAGacctatcctccctcc
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Coding sequence (CDS) from alignment at CM002468.1:717763..718708+

>rna6522 ID=rna6522|Name=rna6522|organism=Nannochloropsis gaditana|type=CDS|length=1104bp|location=Sequence derived from alignment at CM002468.1:717763..718708+ (Nannochloropsis gaditana)
ATGGCCCCCAACACTGAAAATATGCCTACAAGCAGCAGTGCCGACACCCG
TCCCGGCCCCGCCAGAGTGAATAACGAGGGTATGGGCAAGAATACAATTG
ATCCTGCACGCACGCGCACtgacaggaaagaaggcttCTATGTCGAAGCT
CCGTCCCGTGCTTCCCTTGTAACCGCGACTCTGAGGCGGGGATGCTGCGG
CTGTCCACCCGTTCGACATGTGCGCAACGCACCTTCCTTCCAACACATCC
CGCACATCACCATCGGATACCGCGTCGGCTTTTCTCTCCGACATTGCCTG
GCGtcTCTCTTCACATTCCACAACGAGTCCATCAATATTTGGTCGCATCT
TCTGGGAACAATGTACGTCTTCTCGGTCCTCGTTTcgttcctccgcctcg
agcGTCTCCACCCCAACGTGGACCCCATCGAATACAAAgccatcctcacc
ttcctcctgagcGCCGTGGCTTGCCTCAGTTTTAGCACGTGCTACCATAC
CTTTGGGTGCATGTCGGtaggtcctcgtcctcccccacaggCCCTTCTTT
AGATGGCCCCCAACACTGAAAATATGCCTACAAGCAGCAGTGCCGACACC
CGTCCCGGCCCCGCCAGAGTGAATAACGAGGGTATGGGCAAGAATACAAT
TGATCCTGCACGCACGCGCACtgacaggaaagaaggcttCTATGTCGAAG
CTCCGTCCCGTGCTTCCCTTGTAACCGCGACTCTGAGGCGGGGATGCTGC
GGCTGTCCACCCGTTCGACATGTGCGCAACGCACCTTCCTTCCAACACAT
CCCGCACATCACCATCGGATACCGCGTCGGCTTTTCTCTCCGACATTGCC
TGGCGtcTCTCTTCACATTCCACAACGAGTCCATCAATATTTGGTCGCAT
CTTCTGGGAACAATGTACGTCTTCTCGGTCCTCGTTTcgttcctccgcct
cgagcGTCTCCACCCCAACGTGGACCCCATCGAATACAAAgccatcctca
ccttcctcctgagcGCCGTGGCTTGCCTCAGTTTTAGCACGTGCTACCAT
ACCTTTGGGTGCATGTCGGtaggtcctcgtcctcccccacaggCCCTTCT
TTAG
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Synonyms
Publications