EWM24168.1, cds6506 (CDS) Nannochloropsis gaditana

Overview
NameEWM24168.1
Unique Namecds6506
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:717837..718139 +
Alignment locationCM002468.1:718321..718569 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24168.1
ProductHly-III-related protein
Orig transcript idgnl|cribi|Naga_101108g2.4692.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:717837..718139 +
CM002468.1supercontigCM002468.1:718321..718569 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004254AdipoR/HlyIII-related
Homology
BLAST of EWM24168.1 vs. NCBI_GenBank
Match: gi|585105540|gb|EWM24168.1| (Hly-III-related protein [Nannochloropsis gaditana])

HSP 1 Score: 378.637 bits (971), Expect = 5.051e-133
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    1 MAPNTENMPTSSSADTRPGPARVNNEGMGKNTIDPARTRTDRKEGFYVEAPSRASLVTATLRRGCCGCPPVRHVRNAPSFQHIPHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILTFLLSAVACLSFSTCYHTFGCMSVGPRPPPQALL 183
            MAPNTENMPTSSSADTRPGPARVNNEGMGKNTIDPARTRTDRKEGFYVEAPSRASLVTATLRRGCCGCPPVRHVRNAPSFQHIPHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILTFLLSAVACLSFSTCYHTFGCMSVGPRPPPQALL
Sbjct:    1 MAPNTENMPTSSSADTRPGPARVNNEGMGKNTIDPARTRTDRKEGFYVEAPSRASLVTATLRRGCCGCPPVRHVRNAPSFQHIPHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILTFLLSAVACLSFSTCYHTFGCMSVGPRPPPQALL 183          
BLAST of EWM24168.1 vs. NCBI_GenBank
Match: gi|213405054|ref|XP_002173299.1| (hemolysin-III family protein [Schizosaccharomyces japonicus yFS275] >gi|212001346|gb|EEB07006.1| hemolysin-III family protein [Schizosaccharomyces japonicus yFS275])

HSP 1 Score: 75.8702 bits (185), Expect = 7.878e-13
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:   79 SFQHIPHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVD-----PIEYKAI-LTFLLSAVACLSFSTCYHTFGCMS 172
             +Q+ P+I  GYR   S R C+ S+ ++HNE++NIWSH+LG M+VF+ +  F     LHPN       P+  + I L FLL+AV CL+ ST +HTF  ++
Sbjct:  182 DWQNNPYILRGYRFYQSKRRCVKSILSWHNETVNIWSHMLG-MFVFAGICLF-----LHPNTQWWTDLPLSNRLIALVFLLAAVKCLACSTIWHTFASLA 275          
BLAST of EWM24168.1 vs. NCBI_GenBank
Match: gi|66800759|ref|XP_629305.1| (hypothetical protein DDB_G0293072 [Dictyostelium discoideum AX4] >gi|60462686|gb|EAL60888.1| hypothetical protein DDB_G0293072 [Dictyostelium discoideum AX4])

HSP 1 Score: 74.7146 bits (182), Expect = 2.010e-12
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 0
Query:   78 PSFQHIPHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILTFLLSAVACLSFSTCYHTFGCMS 172
            P  Q    I  GYRV FS + CL S+F  HNE++NIW+HLLGT+ +F +L+ +    RL  +   ++      F + A A + FS  +HTF  +S
Sbjct:  298 PYLQGNEFIATGYRVNFSYKLCLKSIFRLHNETLNIWTHLLGTI-LFLILMIYTLTSRLREDATSVDKFVFCMFFICAQAQMLFSATFHTFCSVS 391          
BLAST of EWM24168.1 vs. NCBI_GenBank
Match: gi|805791390|ref|XP_012141995.1| (PREDICTED: progestin and adipoQ receptor family member 3 isoform X2 [Megachile rotundata])

HSP 1 Score: 70.0922 bits (170), Expect = 4.850e-11
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:   75 RNAPSF-QHIPHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILTFLLSAV-ACLSFSTCYHTFGCMS 172
            + AP + QH P+I  GYR   + + C+ S+F + NE++NIWSH+ G M  F + +  L L  +H    P+  K I+T LL    AC+  S+ YHTF C S
Sbjct:   80 KEAPEYLQHNPYIRRGYRGYLTTKLCVESIFWWTNETVNIWSHIFGWMLFFGLTLYDLCLLNIHA---PMGDKVIVTLLLICFQACMILSSVYHTFSCRS 176          
BLAST of EWM24168.1 vs. NCBI_GenBank
Match: gi|1013937334|gb|KYQ91030.1| (hypothetical protein DLAC_07930 [Dictyostelium lacteum])

HSP 1 Score: 70.0922 bits (170), Expect = 6.643e-11
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 0
Query:   75 RNAPSF-QHIPHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILTFLLSAVACLSFSTCYHTFGCMS 172
            +N PS+ Q   +IT GYRV F  + CL SLF  HNE++NIW+HL+GT+  F +++ + +L  L  + +P++      F   A++ + FST +H F  +S
Sbjct:  212 QNLPSYLQGNEYITSGYRVNFPFKLCLMSLFKMHNETLNIWTHLIGTIGFFFLMI-YTQLTIL-VDAEPMDKFIFTIFFFGAISQMLFSTMFHLFCSVS 308          
BLAST of EWM24168.1 vs. NCBI_GenBank
Match: gi|805791387|ref|XP_012141994.1| (PREDICTED: progestin and adipoQ receptor family member 3 isoform X1 [Megachile rotundata])

HSP 1 Score: 69.707 bits (169), Expect = 7.446e-11
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:   75 RNAPSF-QHIPHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILTFLLSAV-ACLSFSTCYHTFGCMS 172
            + AP + QH P+I  GYR   + + C+ S+F + NE++NIWSH+ G M  F + +  L L  +H    P+  K I+T LL    AC+  S+ YHTF C S
Sbjct:   80 KEAPEYLQHNPYIRRGYRGYLTTKLCVESIFWWTNETVNIWSHIFGWMLFFGLTLYDLCLLNIHA---PMGDKVIVTLLLICFQACMILSSVYHTFSCRS 176          
BLAST of EWM24168.1 vs. NCBI_GenBank
Match: gi|955162207|emb|CUG93827.1| (unnamed protein product, partial [Bodo saltans])

HSP 1 Score: 68.9366 bits (167), Expect = 7.674e-11
Identity = 51/176 (28.98%), Postives = 80/176 (45.45%), Query Frame = 0
Query:    8 MPTSSSADTRPGPARVNNEGMGKNTIDPARTRTDRKEGFYVEAPSRASLVTATLRRGCCGCPPVRHVRNAPSFQHI-------------PHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILTFLLSAVACLSFSTCYHTFGC 170
            MPT      R G A  N+  M  +T D ART T+  +  + E P R      +  R       +  +R   +  H+             P I  GYR  +++  CL S+FT HNE+ N+W+HLLG ++  +  V F   + + P +  + +  ++ F  + VAC+  S  YH F C
Sbjct:    1 MPTVGLKQRRSGSA--NHRRM--DTDDDARTHTEDVQS-WEEDPLRLRSPAPSEPRDSPKNAGIESIRPTDTTLHLYDYQDAPAWARGNPFILRGYRAQYTMSMCLRSIFTIHNETGNVWTHLLGMLFFLTCSVMFFS-QVMKPML--VHFVVLIPFSFACVACMGLSAAYHLFSC 168          
BLAST of EWM24168.1 vs. NCBI_GenBank
Match: gi|831787061|ref|XP_012758307.1| (hypothetical protein SAMD00019534_008860 [Acytostelium subglobosum LB1] >gi|735858939|dbj|GAM17711.1| hypothetical protein SAMD00019534_008860 [Acytostelium subglobosum LB1])

HSP 1 Score: 69.707 bits (169), Expect = 8.265e-11
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0
Query:   76 NAPSF-QHIPHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILTFLLSAVACLSFSTCYHTFGCMS 172
            N P++ Q   +I  GYRV FS R C+ SLF  HNE++NIW+HLL T+  F +++  + LE +  +  P +      F L A A + FS  +HTF  +S
Sbjct:  146 NLPAYLQGNEYIQTGYRVNFSYRLCIKSLFRIHNETLNIWTHLLATVMFFILMI--VTLEYILVDPSPTDKFIFTVFFLCAQAQMLFSAIFHTFCSVS 241          
BLAST of EWM24168.1 vs. NCBI_GenBank
Match: gi|1032652665|gb|OAQ33938.1| (HlyIII-domain-containing protein [Mortierella elongata AG-77])

HSP 1 Score: 68.9366 bits (167), Expect = 1.330e-10
Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 0
Query:   31 NTIDPARTRTDRKEGFYVEAPSRASLVTATLRRGCCGCPPVRHVRNAPSF-QHIPHITIGYRV-GFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVL-VSFLRLERLHPNVDPIEYKAILTFLLSAVACLSFSTCYHTFGCMS 172
            +TI   R+ TD K   + E    A   T  +  G  G  P+ H  + P + Q  P I  GYR   FS + C ASL   HNES+N+WSHL+G +    V+ +++ ++  +   V   +      F+  A+ CLS S  +H F C S
Sbjct:   32 DTIHSIRSVTDMKHN-HEEQDDEADETTPVIGSG--GHGPICHWDDLPVWMQDNPAIFTGYRRPTFSYKKCAASLGFLHNESVNVWSHLIGAIACIVVVPLAYFKIFHILETVHWTDVMHFYIFMAGAILCLSMSALFHLFSCHS 173          
BLAST of EWM24168.1 vs. NCBI_GenBank
Match: gi|1160563673|ref|XP_020429884.1| (hypothetical protein PPL_09254 [Polysphondylium pallidum PN500] >gi|281203559|gb|EFA77756.1| hypothetical protein PPL_09254 [Polysphondylium pallidum PN500])

HSP 1 Score: 69.3218 bits (168), Expect = 1.429e-10
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 0
Query:   78 PSFQHIPHITIGYRVGFSLRHCLASLFTFHNESINIWSHLLGTMYVFSVLVSFLRLERLHPNVDPIEYKAILTFLLSAVACLSFSTCYHTFGCMS 172
            P  Q    I  GYRV FS R C  S+F  HNE++NIW+HLL T+  F +++  +    +  N  PI+      F + A A ++FST +HTF  +S
Sbjct:  139 PYLQGNEFIQTGYRVNFSYRLCFLSIFRLHNETLNIWTHLLATILFFILMI--VTSTSILENPQPIDKFIFTVFFICAQAQMAFSTIFHTFCSVS 231          
The following BLAST results are available for this feature:
BLAST of EWM24168.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105540|gb|EWM24168.1|5.051e-133100.00Hly-III-related protein [Nannochloropsis gaditana][more]
gi|213405054|ref|XP_002173299.1|7.878e-1343.00hemolysin-III family protein [Schizosaccharomyces ... [more]
gi|66800759|ref|XP_629305.1|2.010e-1238.95hypothetical protein DDB_G0293072 [Dictyostelium d... [more]
gi|805791390|ref|XP_012141995.1|4.850e-1140.00PREDICTED: progestin and adipoQ receptor family me... [more]
gi|1013937334|gb|KYQ91030.1|6.643e-1138.38hypothetical protein DLAC_07930 [Dictyostelium lac... [more]
gi|805791387|ref|XP_012141994.1|7.446e-1140.00PREDICTED: progestin and adipoQ receptor family me... [more]
gi|955162207|emb|CUG93827.1|7.674e-1128.98unnamed protein product, partial [Bodo saltans][more]
gi|831787061|ref|XP_012758307.1|8.265e-1139.80hypothetical protein SAMD00019534_008860 [Acytoste... [more]
gi|1032652665|gb|OAQ33938.1|1.330e-1033.10HlyIII-domain-containing protein [Mortierella elon... [more]
gi|1160563673|ref|XP_020429884.1|1.429e-1038.95hypothetical protein PPL_09254 [Polysphondylium pa... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6522rna6522Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications