rna6521, rna6521 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6521
Unique Name	rna6521
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	594
Alignment location	CM002468.1:715168..717520 -

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Properties


Property Name	Value
Product	sugar transporter
Orig transcript id	gnl\|cribi\|Naga_101108g1.4691.mrna
Orig protein id	gnl\|cribi\|Naga_101108g1.4691
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:715168..717520 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101108g1	gene6301	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24167.1	cds6505	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6521	rna6521-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:715168..717520-
coding sequence from alignment at CM002468.1:715168..717520-

mRNA sequence

>rna6521 ID=rna6521|Name=rna6521|organism=Nannochloropsis gaditana|type=mRNA|length=594bp
ATGACATCTTCCGATGACAGCGACCGTGCGACGCTCGTTCGGGCCATTGA
CTTCTCCCTCCAAGGGGACGCAGAGGCGAGGCGCTTCCTGGAGGACTTGT
CGACGCCGGATTTGAGCGCAGGCATTGACCCACTTTTGTCGCTGTGGAAG
GTATCCTTGGATCTTTTTACCAGTTCTCCAGATGGTACACCGCACGCATA
TTTCATTGCATGTGTGCTTCGTCGAAATGTCCGGCAACAATGGGACTTCA
CGCCTTCACAAACACGGACCCAGCTTGCCAAGGGCACTTGGGAGACCCTC
ATAGCTTACGCAGAGAAGCGTGCGGAAATACCCCCTCAAATTAATTCTTC
CCGCGGTGTACTCAGCACTTTGATAGCTGATCCAGCCGTGAATCAACTGA
TTTCGGTCGTGGTCGCACAAGCTGTGGCAATTGAGGACAGGAATGGGGAA
GCCCATGCCGCGACCCGACAATTAATCTCCATGGCCCTATCCCACGCAGG
GAGTGTGAACAAAGCGCAGCAATCTCTCTCCACTGGCCGATGGAAGCCGG
TTCGGAGGCGGGAAGCGTCCTGGTGGTGGGCTTGCGGGCACTAA

protein sequence of rna6521

>rna6521-protein ID=rna6521-protein|Name=rna6521|organism=Nannochloropsis gaditana|type=polypeptide|length=732bp
MHKNEFSKTNGVQEEEEDGTNAEIVSILLSAGLTSPPPSPQPISPPPLQV
RRTFSPYAGPSRGNQMPSSTFGGNMDRPCASVPSLKELPDYCRPNSTDPA
SVRPPPAYRHTPTPPTFLQKSPSLPKIGMHGSIASSMVLAGATLGRGASH
DSLCQLATVLREANDAIIGGDVSGQGIKRHPTQTSEQERDDKEEGLGKEE
RQPSPGEDGAHQPLSPSPTLPTHHGPPTDPTASCPTDSISPCHHPPTLLP
PSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLP
SSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFA
LSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISV
TLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLWSVRRMEGRK
EEGRKRCADGGGLKMVVMDREEGNGGVRMWVLDQGGEEGKEEGWQGGKQT
APVSFASIPSLVEREEEGREEQGEEEMGVEWGEGEGRGGWIGKREEGRER
ESWGLDGGDGLRKRWEVAHGGGDGKGGTSVRDAERPGRNNTQVWRHPRVL
LIAVAITLTFASQGFLALSFGVHSRNLLGLASGAVGLFYSAFSLPYALMG
VVIGPLARRVASSTLITYGTLLEALGLLLLGPPPALLPLSSPPSSPPSPP
LPPSCGPSPSWGMLCLGGRDGPHHNARHRRHA

mRNA from alignment at CM002468.1:715168..717520-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6521 ID=rna6521|Name=rna6521|organism=Nannochloropsis gaditana|type=mRNA|length=2353bp|location=Sequence derived from alignment at CM002468.1:715168..717520- (Nannochloropsis gaditana)
ACGGCGCTAGAATGACCAGGTGCAGGCTTCATATCTGTAACAGTATGCTT
GAAAATTAAGACAACCACCTTTTCCCCTCCTACAGTGGATCTGCCGCGCT
TATTCAAGAGACAATTCAAGCGGATAATTCTTGTTGACCGCATCAATGCT
CTAACCCATGCATAAAAATGAATTTTCGAAGACTAATGGGGTGCAAGAAG
AGGAAGAGGATGGCACGAACGCGGAGATTGTGTCCATTTTGTTGTCGGCC
GGATTGACCTCCCCACCCCCGTCGCCACAACCCATCTCTCCCCCGCCATT
GCAAGTACGTCGCACATTTAGCCCCTACGCTGGCCCAAGTCGCGGAAATC
AGATGCCTAGTAGCACATTCGGAGGGAACATGGACCGTCCCTGCGCAAGT
GTTCCCTCGCTCAAGGAGTTGCCAGATTATTGCCGCCCCAACAGCACTGA
TCCTGCATCAGTCCGTCCCCCACCTGCCTACCGGCACACACCGACCCCTC
CCACTTTTCTTCAAAAATCCCCATCCCTGCCCAAAATTGGAATGCATGGC
TCCATTGCTTCCTCCATGGTGTTGGCAGGCGCCACCCTGGGGCGGGGGGC
TTCGCACGACAGCCTTTGCCAGCTCGCAACCGTGCTGCGGGAGGCCAACG
ATGCCATCATTGGGGGAGATGTGTCGGGACAAGGAATAAAGAGGCATCCC
ACGCAAACATCGGAGCAGGAACGGGACGACAAGGAGGAGGGGTTGGGCAA
GGAGGAACGGCAGCCCAGCCCTGGTGAGGACGGCGCACACCAGCCTCTGT
CGCCGTCTCCGACCCTCCCAACTCATCACGGACCCCCCACAGACCCCACA
GCCTCTTGCCCGACCGATAGCATCAGTCCCTGTCACCACCCACCCACGCT
CCTCCCTCCCTCCCTCCCTGCTCGTCTCCGTCCATTGCCCCTGGGCCTCG
GCCAGCTCCGTCTTCTTTGCTTTGGTGGCTACGCTTTCCTCCTCCTTGCC
ATGTACGGCATCTCCCCTTTCTTCCAGGAGGACGCACAGAGCCGCCTCGG
TCTTCCCTCCTCCCTGGTCGGCCTCACCTTCTCCCTCTCGGCCCTCACCT
CCATGCTCATCACGCCCCTAGCCGCCCATCTCTGTCAAGCCTTTGGCCGT
TACCGGACCCTATTCCTCGGCTATGTCCTCGCCCTCCTCGCTAACGTTGG
CTTCGCCCTCTCCCGCACCTCCCCTTCCCTTCTCTCCTTTCGATCTGCCC
AGGGTCTGGCCATGGGCCTGGTGGCGGTGGCCTCCATGACCCTTCTGATT
GCCGGCGCCCCCGACATCGTCAAGGAGATGGGGTTGCAAGAGTTGGTCAT
CTCCGTCACCTTAATCATCGCGCCCATCCTGGGCGGTGGCTTCTATGAAG
TGATGTCCGTGGAGAGGACGTATCTGGCCTTGAGTGCACCGCTCTTGGGG
ATGGTGGTGGTGTTGGGAGGGATGTTGTGGTCAGTGAGGAGAATGGAGGG
GAGGAAAGAGGAAGGGAGGAAGCGTTGTGCAGACGGGGGGGGGTTGAAGA
TGGTTGTGATGGATCGGGAGGAAGGAAACGGAGGCGTCCGAATGTGGGTG
CTGGACCAAGGAGGGGAGGAAGGGAAGGAGGAAGGGTGGCAGGGGGGAAA
ACAAACGGCGCCCGTTTCCTTCGCCTCTATCCCATCCCTGGTGGAGAGGG
AGGAGGAAGGGAGGGAGGAGCAGGGGGAGGAGGAGATGGGAGTGGAGTGG
GGGGAAGGAGAAGGGAGGGGAGGGTGGATTGGAAAGAGGGAGGAAGGGAG
GGAGAGGGAGTCTTGGGGCTTAGACGGAGGCGACGGGTTGCGAAAGAGGT
GGGAGGTAGCGCACGGCGGAGGTGATGGGAAGGGAGGAACATCGGTGAGA
GACGCAGAAAGGCCAGGAAGGAACAACACGCAGGTCTGGCGCCACCCCCG
CGTCCTGCTCATCGCCGTTGCCATCACCTTAACCTTCGCGAGCCAAGGAT
TCCTCGCCCTCTCCTTCGGAGTGCACTCCCGGAACCTCCTGGGCCTGGCC
TCCGGGGCCGTCGGCCTTTTTTACTCGGCCTTTTCCCTCCCCTACGCCCT
CATGGGCGTGGTCATCGGGCCATTGGCCCGACGTGTCGCGTCTTCCACCC
TCATCACGTACGGAACCCTCCTCGAAGCCCTGGGACTCCTCCTCCTTGGT
CCTCCCCCGGCCCTCCTCCCCCTCTCCTCGCCCCCTTCCTCCCCCCCTTC
TCCCCCCCTTCCTCCCTCGTGTGGTCCTTCACCCTCCTGGGGGATGCTCT
GCCTCGGGGGTCGGGATGGGCCTCATCACAATGCCCGCCATCGACGCCAT
GCG

Coding sequence (CDS) from alignment at CM002468.1:715168..717520-

>rna6521 ID=rna6521|Name=rna6521|organism=Nannochloropsis gaditana|type=CDS|length=2196bp|location=Sequence derived from alignment at CM002468.1:715168..717520- (Nannochloropsis gaditana)
ATGCATAAAAATGAATTTTCGAAGACTAATGGGGTGCAAGAAGAGGAAGA
GGATGGCACGAACGCGGAGATTGTGTCCATTTTGTTGTCGGCCGGATTGA
CCTCCCCACCCCCGTCGCCACAACCCATCTCTCCCCCGCCATTGCAAGTA
CGTCGCACATTTAGCCCCTACGCTGGCCCAAGTCGCGGAAATCAGATGCC
TAGTAGCACATTCGGAGGGAACATGGACCGTCCCTGCGCAAGTGTTCCCT
CGCTCAAGGAGTTGCCAGATTATTGCCGCCCCAACAGCACTGATCCTGCA
TCAGTCCGTCCCCCACCTGCCTACCGGCACACACCGACCCCTCCCACTTT
TCTTCAAAAATCCCCATCCCTGCCCAAAATTGGAATGCATGGCTCCATTG
CTTCCTCCATGGTGTTGGCAGGCGCCACCCTGGGGCGGGGGGCTTCGCAC
GACAGCCTTTGCCAGCTCGCAACCGTGCTGCGGGAGGCCAACGATGCCAT
CATTGGGGGAGATGTGTCGGGACAAGGAATAAAGAGGCATCCCACGCAAA
CATCGGAGCAGGAACGGGACGACAAGGAGGAGGGGTTGGGCAAGGAGGAA
CGGCAGCCCAGCCCTGGTGAGGACGGCGCACACCAGCCTCTGTCGCCGTC
TCCGACCCTCCCAACTCATCACGGACCCCCCACAGACCCCACAGCCTCTT
GCCCGACCGATAGCATCAGTCCCTGTCACCACCCACCCACGCTCCTCCCT
CCCTCCCTCCCTGCTCGTCTCCGTCCATTGCCCCTGGGCCTCGGCCAGCT
CCGTCTTCTTTGCTTTGGTGGCTACGCTTTCCTCCTCCTTGCCATGTACG
GCATCTCCCCTTTCTTCCAGGAGGACGCACAGAGCCGCCTCGGTCTTCCC
TCCTCCCTGGTCGGCCTCACCTTCTCCCTCTCGGCCCTCACCTCCATGCT
CATCACGCCCCTAGCCGCCCATCTCTGTCAAGCCTTTGGCCGTTACCGGA
CCCTATTCCTCGGCTATGTCCTCGCCCTCCTCGCTAACGTTGGCTTCGCC
CTCTCCCGCACCTCCCCTTCCCTTCTCTCCTTTCGATCTGCCCAGGGTCT
GGCCATGGGCCTGGTGGCGGTGGCCTCCATGACCCTTCTGATTGCCGGCG
CCCCCGACATCGTCAAGGAGATGGGGTTGCAAGAGTTGGTCATCTCCGTC
ACCTTAATCATCGCGCCCATCCTGGGCGGTGGCTTCTATGAAGTGATGTC
CGTGGAGAGGACGTATCTGGCCTTGAGTGCACCGCTCTTGGGGATGGTGG
TGGTGTTGGGAGGGATGTTGTGGTCAGTGAGGAGAATGGAGGGGAGGAAA
GAGGAAGGGAGGAAGCGTTGTGCAGACGGGGGGGGGTTGAAGATGGTTGT
GATGGATCGGGAGGAAGGAAACGGAGGCGTCCGAATGTGGGTGCTGGACC
AAGGAGGGGAGGAAGGGAAGGAGGAAGGGTGGCAGGGGGGAAAACAAACG
GCGCCCGTTTCCTTCGCCTCTATCCCATCCCTGGTGGAGAGGGAGGAGGA
AGGGAGGGAGGAGCAGGGGGAGGAGGAGATGGGAGTGGAGTGGGGGGAAG
GAGAAGGGAGGGGAGGGTGGATTGGAAAGAGGGAGGAAGGGAGGGAGAGG
GAGTCTTGGGGCTTAGACGGAGGCGACGGGTTGCGAAAGAGGTGGGAGGT
AGCGCACGGCGGAGGTGATGGGAAGGGAGGAACATCGGTGAGAGACGCAG
AAAGGCCAGGAAGGAACAACACGCAGGTCTGGCGCCACCCCCGCGTCCTG
CTCATCGCCGTTGCCATCACCTTAACCTTCGCGAGCCAAGGATTCCTCGC
CCTCTCCTTCGGAGTGCACTCCCGGAACCTCCTGGGCCTGGCCTCCGGGG
CCGTCGGCCTTTTTTACTCGGCCTTTTCCCTCCCCTACGCCCTCATGGGC
GTGGTCATCGGGCCATTGGCCCGACGTGTCGCGTCTTCCACCCTCATCAC
GTACGGAACCCTCCTCGAAGCCCTGGGACTCCTCCTCCTTGGTCCTCCCC
CGGCCCTCCTCCCCCTCTCCTCGCCCCCTTCCTCCCCCCCTTCTCCCCCC
CTTCCTCCCTCGTGTGGTCCTTCACCCTCCTGGGGGATGCTCTGCCTCGG
GGGTCGGGATGGGCCTCATCACAATGCCCGCCATCGACGCCATGCG

Synonyms

Publications