EWM24167.1, cds6505 (CDS) Nannochloropsis gaditana

Overview
NameEWM24167.1
Unique Namecds6505
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:715168..717363 -

Link to JBrowse

Properties
Property NameValue
Start range715168
Start range.
Protein idEWM24167.1
Productsugar transporter
Partialtrue
Orig transcript idgnl|cribi|Naga_101108g1.4691.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:715168..717363 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR011701MFS
Homology
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|585105539|gb|EWM24167.1| (sugar transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 1461.82 bits (3783), Expect = 0.000e+0
Identity = 732/732 (100.00%), Postives = 732/732 (100.00%), Query Frame = 0
Query:    1 MHKNEFSKTNGVQEEEEDGTNAEIVSILLSAGLTSPPPSPQPISPPPLQVRRTFSPYAGPSRGNQMPSSTFGGNMDRPCASVPSLKELPDYCRPNSTDPASVRPPPAYRHTPTPPTFLQKSPSLPKIGMHGSIASSMVLAGATLGRGASHDSLCQLATVLREANDAIIGGDVSGQGIKRHPTQTSEQERDDKEEGLGKEERQPSPGEDGAHQPLSPSPTLPTHHGPPTDPTASCPTDSISPCHHPPTLLPPSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLWSVRRMEGRKEEGRKRCADGGGLKMVVMDREEGNGGVRMWVLDQGGEEGKEEGWQGGKQTAPVSFASIPSLVEREEEGREEQGEEEMGVEWGEGEGRGGWIGKREEGRERESWGLDGGDGLRKRWEVAHGGGDGKGGTSVRDAERPGRNNTQVWRHPRVLLIAVAITLTFASQGFLALSFGVHSRNLLGLASGAVGLFYSAFSLPYALMGVVIGPLARRVASSTLITYGTLLEALGLLLLGPPPALLPLSSPPSSPPSPPLPPSCGPSPSWGMLCLGGRDGPHHNARHRRHA 732
            MHKNEFSKTNGVQEEEEDGTNAEIVSILLSAGLTSPPPSPQPISPPPLQVRRTFSPYAGPSRGNQMPSSTFGGNMDRPCASVPSLKELPDYCRPNSTDPASVRPPPAYRHTPTPPTFLQKSPSLPKIGMHGSIASSMVLAGATLGRGASHDSLCQLATVLREANDAIIGGDVSGQGIKRHPTQTSEQERDDKEEGLGKEERQPSPGEDGAHQPLSPSPTLPTHHGPPTDPTASCPTDSISPCHHPPTLLPPSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLWSVRRMEGRKEEGRKRCADGGGLKMVVMDREEGNGGVRMWVLDQGGEEGKEEGWQGGKQTAPVSFASIPSLVEREEEGREEQGEEEMGVEWGEGEGRGGWIGKREEGRERESWGLDGGDGLRKRWEVAHGGGDGKGGTSVRDAERPGRNNTQVWRHPRVLLIAVAITLTFASQGFLALSFGVHSRNLLGLASGAVGLFYSAFSLPYALMGVVIGPLARRVASSTLITYGTLLEALGLLLLGPPPALLPLSSPPSSPPSPPLPPSCGPSPSWGMLCLGGRDGPHHNARHRRHA
Sbjct:    1 MHKNEFSKTNGVQEEEEDGTNAEIVSILLSAGLTSPPPSPQPISPPPLQVRRTFSPYAGPSRGNQMPSSTFGGNMDRPCASVPSLKELPDYCRPNSTDPASVRPPPAYRHTPTPPTFLQKSPSLPKIGMHGSIASSMVLAGATLGRGASHDSLCQLATVLREANDAIIGGDVSGQGIKRHPTQTSEQERDDKEEGLGKEERQPSPGEDGAHQPLSPSPTLPTHHGPPTDPTASCPTDSISPCHHPPTLLPPSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLWSVRRMEGRKEEGRKRCADGGGLKMVVMDREEGNGGVRMWVLDQGGEEGKEEGWQGGKQTAPVSFASIPSLVEREEEGREEQGEEEMGVEWGEGEGRGGWIGKREEGRERESWGLDGGDGLRKRWEVAHGGGDGKGGTSVRDAERPGRNNTQVWRHPRVLLIAVAITLTFASQGFLALSFGVHSRNLLGLASGAVGLFYSAFSLPYALMGVVIGPLARRVASSTLITYGTLLEALGLLLLGPPPALLPLSSPPSSPPSPPLPPSCGPSPSWGMLCLGGRDGPHHNARHRRHA 732          
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|294930921|ref|XP_002779717.1| (Synaptic vesicular amine transporter, putative [Perkinsus marinus ATCC 50983] >gi|239889233|gb|EER11512.1| Synaptic vesicular amine transporter, putative, partial [Perkinsus marinus ATCC 50983])

HSP 1 Score: 81.2629 bits (199), Expect = 3.822e-13
Identity = 62/231 (26.84%), Postives = 106/231 (45.89%), Query Frame = 0
Query:  243 HHPPTLLPPSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAP-DIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLW-------SVRRMEGRKEEGRKRCADGGGLKM 465
            + PPT L  +  A+ R        + +LC   Y   +  +Y I+PFF   A+  L L  + +G+ F+     S ++ PL  +L Q  G +  L  G V   +  +GF  S+   S L+FR+ QG+       A+  ++    P DI K    QEL+ +V   + P +G G ++V     +++ L+A   G++V++    W       S+   +G  + GRK       L+M
Sbjct:   17 NAPPTRLTSAQRAKRR-------WMLVLCQTAYFVTITLLYQIAPFFPVYAKQELDLTDATIGVVFAFLPCASCIMAPLTGYLLQLLGYFTVLLAGGVFVAIGTLGFGFSKVLWSFLAFRAVQGVGAACTYSATSAIMARLFPGDIEKIFAFQELIGNVGFAVGPTIGAGLFQVGGFHTSFIVLTAIHFGVMVLMLAT-WVPIPPAASLPTSDGAAQSGRKVVGVSEVLRM 239          
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|585099992|gb|EWM20408.1| (vesicular acetylcholine transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 79.337 bits (194), Expect = 4.143e-13
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 0
Query:  286 SPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFL--GYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSA 427
            +PF Q   +          GL F++  L ++L +PL A LC+A GR + L    G +++LLA +GF L+R+ P  L  R  QGL   L  +A + LLI   PD+  ++  QE+++ V++++AP LGG  Y +      ++ L+ 
Sbjct:   58 APFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRA-GRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAV 200          
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|585101952|gb|EWM21678.1| (Major facilitator superfamily domain protein [Nannochloropsis gaditana])

HSP 1 Score: 73.1738 bits (178), Expect = 3.036e-10
Identity = 43/144 (29.86%), Postives = 75/144 (52.08%), Query Frame = 0
Query:  285 ISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAP 428
            + PFF    +      ++LVG  FS+++L   L  PL AH+     R  +L L  ++ +     F LS  +   L+ R  QG+  G++ VA ++LL+  +PDI +++GL E   ++  +  P+LGG  +    +   +L L+AP
Sbjct:   65 LGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAP 208          
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|585099635|gb|EWM20208.1| (major facilitator superfamily mfs_1 [Nannochloropsis gaditana])

HSP 1 Score: 69.707 bits (169), Expect = 2.557e-9
Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = 0
Query:  252 SLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAP 428
            SL +  R L  G   LR     G A+    +  + P+F    + + G  S+L+GL FS++++   L  PL   L +AF R  TL +G V+     + F +  + P  +  R  QG+  G + V+ ++LL+  + D+ +++GL E    V  ++ P++GG     +     +  ++AP
Sbjct:   82 SLSSTARSLKSGPLMLRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRAFSRLVTLIIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMTAP 258          
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|553177040|ref|XP_005852431.1| (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296102|gb|EKU23401.1| major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 69.707 bits (169), Expect = 7.882e-9
Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = 0
Query:  252 SLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAP 428
            SL +  R L  G   LR     G A+    +  + P+F    + + G  S+L+GL FS++++   L  PL   L +AF R  TL +G V+     + F +  + P  +  R  QG+  G + V+ ++LL+  + D+ +++GL E    V  ++ P++GG     +     +  ++AP
Sbjct:   82 SLSSTARSLKSGPLMLRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRAFSRLVTLMIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMTAP 258          
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|294924532|ref|XP_002778829.1| (hypothetical protein Pmar_PMAR019002 [Perkinsus marinus ATCC 50983] >gi|239887633|gb|EER10624.1| hypothetical protein Pmar_PMAR019002 [Perkinsus marinus ATCC 50983])

HSP 1 Score: 70.0922 bits (170), Expect = 1.149e-8
Identity = 38/139 (27.34%), Postives = 69/139 (49.64%), Query Frame = 0
Query:  299 LPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAP-DIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVL 436
            L  + +G+ F+     S ++ PL  +L Q  G +  L  G V   +  +GF  S+   S L+FR+ QG+       A+  ++    P DI K    QEL+ +V   + P +G G ++V     +++ L+A   G++V++
Sbjct:  569 LTDATIGVVFAFLPCASCIMAPLTGYLLQLLGYFTVLLAGGVFVAIGTLGFGFSKVLWSFLAFRAIQGVGAACTYSATSAIMARLFPGDIEKIFAFQELIGNVGFAVGPTIGAGLFQVGGFHTSFIVLTAIHFGVMVLM 707          
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|294924528|ref|XP_002778828.1| (hypothetical protein Pmar_PMAR019002 [Perkinsus marinus ATCC 50983] >gi|239887632|gb|EER10623.1| hypothetical protein Pmar_PMAR019002 [Perkinsus marinus ATCC 50983])

HSP 1 Score: 69.3218 bits (168), Expect = 1.744e-8
Identity = 46/175 (26.29%), Postives = 81/175 (46.29%), Query Frame = 0
Query:  299 LPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAP-DIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLW-------SVRRMEGRKEEGRKRCADGGGLKM 465
            L  + +G+ F+     S ++ PL  +L Q  G +  L  G V   +  +GF  S+   S L+FR+ QG+       A+  ++    P DI K    QEL+ +V   + P +G G ++V     +++ L+A   G++V++    W       S+   +G  + GRK       L+M
Sbjct:  569 LTDATIGVVFAFLPCASCIMAPLTGYLLQLLGYFTVLLAGGVFVAIGTLGFGFSKVLWSFLAFRAIQGVGAACTYSATSAIMARLFPGDIEKIFAFQELIGNVGFAVGPTIGAGLFQVGGFHTSFIVLTAIHFGVMVLMLAT-WVPIPPAASLPTSDGAAQSGRKVVGVSEVLRM 742          
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|553183476|ref|XP_005853905.1| (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526] >gi|422295160|gb|EKU22459.1| permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 67.0106 bits (162), Expect = 8.703e-8
Identity = 47/145 (32.41%), Postives = 70/145 (48.28%), Query Frame = 0
Query:  284 GISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQA-FGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSA 427
             + PFF + A+  L   S++VG+ FSL  L S+ +T L   +  A FGR      G +L     VGF       S++  R  QG+  G + VA M LL+  + +I +++GL +  I +  I+ P LG   Y  M      L L A
Sbjct:  104 AMVPFFPDHAKRYLNADSTIVGVIFSLYPL-SLFLTSLVIGMASARFGRAFVYTSGLILLGGGTVGFGFCNDLTSIMIMRVVQGIGGGCINVAGMALLLQVSINIERDVGLDQAAIGLGYILGPPLGAILYAYMGFRDLNLVLGA 247          
The following BLAST results are available for this feature:
BLAST of EWM24167.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585105539|gb|EWM24167.1|0.000e+0100.00sugar transporter, partial [Nannochloropsis gadita... [more]
gi|294930921|ref|XP_002779717.1|3.822e-1326.84Synaptic vesicular amine transporter, putative [Pe... [more]
gi|585099992|gb|EWM20408.1|4.143e-1333.33vesicular acetylcholine transporter, partial [Nann... [more]
gi|585101952|gb|EWM21678.1|3.036e-1029.86Major facilitator superfamily domain protein [Nann... [more]
gi|585099635|gb|EWM20208.1|2.557e-927.12major facilitator superfamily mfs_1 [Nannochlorops... [more]
gi|553177040|ref|XP_005852431.1|7.882e-927.12major facilitator superfamily mfs 1, partial [Nann... [more]
gi|294924532|ref|XP_002778829.1|1.149e-827.34hypothetical protein Pmar_PMAR019002 [Perkinsus ma... [more]
gi|294924528|ref|XP_002778828.1|1.744e-826.29hypothetical protein Pmar_PMAR019002 [Perkinsus ma... [more]
gi|553183476|ref|XP_005853905.1|8.703e-832.41permease (major facilitator superfamily) [Nannochl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6521rna6521Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications