EWM24167.1, cds6505 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|585105539|gb|EWM24167.1| (sugar transporter, partial [Nannochloropsis gaditana]) HSP 1 Score: 1461.82 bits (3783), Expect = 0.000e+0 Identity = 732/732 (100.00%), Postives = 732/732 (100.00%), Query Frame = 0
Query: 1 MHKNEFSKTNGVQEEEEDGTNAEIVSILLSAGLTSPPPSPQPISPPPLQVRRTFSPYAGPSRGNQMPSSTFGGNMDRPCASVPSLKELPDYCRPNSTDPASVRPPPAYRHTPTPPTFLQKSPSLPKIGMHGSIASSMVLAGATLGRGASHDSLCQLATVLREANDAIIGGDVSGQGIKRHPTQTSEQERDDKEEGLGKEERQPSPGEDGAHQPLSPSPTLPTHHGPPTDPTASCPTDSISPCHHPPTLLPPSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLWSVRRMEGRKEEGRKRCADGGGLKMVVMDREEGNGGVRMWVLDQGGEEGKEEGWQGGKQTAPVSFASIPSLVEREEEGREEQGEEEMGVEWGEGEGRGGWIGKREEGRERESWGLDGGDGLRKRWEVAHGGGDGKGGTSVRDAERPGRNNTQVWRHPRVLLIAVAITLTFASQGFLALSFGVHSRNLLGLASGAVGLFYSAFSLPYALMGVVIGPLARRVASSTLITYGTLLEALGLLLLGPPPALLPLSSPPSSPPSPPLPPSCGPSPSWGMLCLGGRDGPHHNARHRRHA 732
MHKNEFSKTNGVQEEEEDGTNAEIVSILLSAGLTSPPPSPQPISPPPLQVRRTFSPYAGPSRGNQMPSSTFGGNMDRPCASVPSLKELPDYCRPNSTDPASVRPPPAYRHTPTPPTFLQKSPSLPKIGMHGSIASSMVLAGATLGRGASHDSLCQLATVLREANDAIIGGDVSGQGIKRHPTQTSEQERDDKEEGLGKEERQPSPGEDGAHQPLSPSPTLPTHHGPPTDPTASCPTDSISPCHHPPTLLPPSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLWSVRRMEGRKEEGRKRCADGGGLKMVVMDREEGNGGVRMWVLDQGGEEGKEEGWQGGKQTAPVSFASIPSLVEREEEGREEQGEEEMGVEWGEGEGRGGWIGKREEGRERESWGLDGGDGLRKRWEVAHGGGDGKGGTSVRDAERPGRNNTQVWRHPRVLLIAVAITLTFASQGFLALSFGVHSRNLLGLASGAVGLFYSAFSLPYALMGVVIGPLARRVASSTLITYGTLLEALGLLLLGPPPALLPLSSPPSSPPSPPLPPSCGPSPSWGMLCLGGRDGPHHNARHRRHA
Sbjct: 1 MHKNEFSKTNGVQEEEEDGTNAEIVSILLSAGLTSPPPSPQPISPPPLQVRRTFSPYAGPSRGNQMPSSTFGGNMDRPCASVPSLKELPDYCRPNSTDPASVRPPPAYRHTPTPPTFLQKSPSLPKIGMHGSIASSMVLAGATLGRGASHDSLCQLATVLREANDAIIGGDVSGQGIKRHPTQTSEQERDDKEEGLGKEERQPSPGEDGAHQPLSPSPTLPTHHGPPTDPTASCPTDSISPCHHPPTLLPPSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLWSVRRMEGRKEEGRKRCADGGGLKMVVMDREEGNGGVRMWVLDQGGEEGKEEGWQGGKQTAPVSFASIPSLVEREEEGREEQGEEEMGVEWGEGEGRGGWIGKREEGRERESWGLDGGDGLRKRWEVAHGGGDGKGGTSVRDAERPGRNNTQVWRHPRVLLIAVAITLTFASQGFLALSFGVHSRNLLGLASGAVGLFYSAFSLPYALMGVVIGPLARRVASSTLITYGTLLEALGLLLLGPPPALLPLSSPPSSPPSPPLPPSCGPSPSWGMLCLGGRDGPHHNARHRRHA 732
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|294930921|ref|XP_002779717.1| (Synaptic vesicular amine transporter, putative [Perkinsus marinus ATCC 50983] >gi|239889233|gb|EER11512.1| Synaptic vesicular amine transporter, putative, partial [Perkinsus marinus ATCC 50983]) HSP 1 Score: 81.2629 bits (199), Expect = 3.822e-13 Identity = 62/231 (26.84%), Postives = 106/231 (45.89%), Query Frame = 0
Query: 243 HHPPTLLPPSLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAP-DIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLW-------SVRRMEGRKEEGRKRCADGGGLKM 465
+ PPT L + A+ R + +LC Y + +Y I+PFF A+ L L + +G+ F+ S ++ PL +L Q G + L G V + +GF S+ S L+FR+ QG+ A+ ++ P DI K QEL+ +V + P +G G ++V +++ L+A G++V++ W S+ +G + GRK L+M
Sbjct: 17 NAPPTRLTSAQRAKRR-------WMLVLCQTAYFVTITLLYQIAPFFPVYAKQELDLTDATIGVVFAFLPCASCIMAPLTGYLLQLLGYFTVLLAGGVFVAIGTLGFGFSKVLWSFLAFRAVQGVGAACTYSATSAIMARLFPGDIEKIFAFQELIGNVGFAVGPTIGAGLFQVGGFHTSFIVLTAIHFGVMVLMLAT-WVPIPPAASLPTSDGAAQSGRKVVGVSEVLRM 239
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|585099992|gb|EWM20408.1| (vesicular acetylcholine transporter, partial [Nannochloropsis gaditana]) HSP 1 Score: 79.337 bits (194), Expect = 4.143e-13 Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 0
Query: 286 SPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFL--GYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSA 427
+PF Q + GL F++ L ++L +PL A LC+A GR + L G +++LLA +GF L+R+ P L R QGL L +A + LLI PD+ ++ QE+++ V++++AP LGG Y + ++ L+
Sbjct: 58 APFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRA-GRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAV 200
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|585101952|gb|EWM21678.1| (Major facilitator superfamily domain protein [Nannochloropsis gaditana]) HSP 1 Score: 73.1738 bits (178), Expect = 3.036e-10 Identity = 43/144 (29.86%), Postives = 75/144 (52.08%), Query Frame = 0
Query: 285 ISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAP 428
+ PFF + ++LVG FS+++L L PL AH+ R +L L ++ + F LS + L+ R QG+ G++ VA ++LL+ +PDI +++GL E ++ + P+LGG + + +L L+AP
Sbjct: 65 LGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAP 208
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|585099635|gb|EWM20208.1| (major facilitator superfamily mfs_1 [Nannochloropsis gaditana]) HSP 1 Score: 69.707 bits (169), Expect = 2.557e-9 Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = 0
Query: 252 SLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAP 428
SL + R L G LR G A+ + + P+F + + G S+L+GL FS++++ L PL L +AF R TL +G V+ + F + + P + R QG+ G + V+ ++LL+ + D+ +++GL E V ++ P++GG + + ++AP
Sbjct: 82 SLSSTARSLKSGPLMLRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRAFSRLVTLIIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMTAP 258
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|553177040|ref|XP_005852431.1| (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296102|gb|EKU23401.1| major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 69.707 bits (169), Expect = 7.882e-9 Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = 0
Query: 252 SLPARLRPLPLGLGQLRLLCFGGYAFLLLAMYGISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAP 428
SL + R L G LR G A+ + + P+F + + G S+L+GL FS++++ L PL L +AF R TL +G V+ + F + + P + R QG+ G + V+ ++LL+ + D+ +++GL E V ++ P++GG + + ++AP
Sbjct: 82 SLSSTARSLKSGPLMLRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRAFSRLVTLMIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMTAP 258
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|294924532|ref|XP_002778829.1| (hypothetical protein Pmar_PMAR019002 [Perkinsus marinus ATCC 50983] >gi|239887633|gb|EER10624.1| hypothetical protein Pmar_PMAR019002 [Perkinsus marinus ATCC 50983]) HSP 1 Score: 70.0922 bits (170), Expect = 1.149e-8 Identity = 38/139 (27.34%), Postives = 69/139 (49.64%), Query Frame = 0
Query: 299 LPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAP-DIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVL 436
L + +G+ F+ S ++ PL +L Q G + L G V + +GF S+ S L+FR+ QG+ A+ ++ P DI K QEL+ +V + P +G G ++V +++ L+A G++V++
Sbjct: 569 LTDATIGVVFAFLPCASCIMAPLTGYLLQLLGYFTVLLAGGVFVAIGTLGFGFSKVLWSFLAFRAIQGVGAACTYSATSAIMARLFPGDIEKIFAFQELIGNVGFAVGPTIGAGLFQVGGFHTSFIVLTAIHFGVMVLM 707
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|294924528|ref|XP_002778828.1| (hypothetical protein Pmar_PMAR019002 [Perkinsus marinus ATCC 50983] >gi|239887632|gb|EER10623.1| hypothetical protein Pmar_PMAR019002 [Perkinsus marinus ATCC 50983]) HSP 1 Score: 69.3218 bits (168), Expect = 1.744e-8 Identity = 46/175 (26.29%), Postives = 81/175 (46.29%), Query Frame = 0
Query: 299 LPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAP-DIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVLGGMLW-------SVRRMEGRKEEGRKRCADGGGLKM 465
L + +G+ F+ S ++ PL +L Q G + L G V + +GF S+ S L+FR+ QG+ A+ ++ P DI K QEL+ +V + P +G G ++V +++ L+A G++V++ W S+ +G + GRK L+M
Sbjct: 569 LTDATIGVVFAFLPCASCIMAPLTGYLLQLLGYFTVLLAGGVFVAIGTLGFGFSKVLWSFLAFRAIQGVGAACTYSATSAIMARLFPGDIEKIFAFQELIGNVGFAVGPTIGAGLFQVGGFHTSFIVLTAIHFGVMVLMLAT-WVPIPPAASLPTSDGAAQSGRKVVGVSEVLRM 742
BLAST of EWM24167.1 vs. NCBI_GenBank
Match: gi|553183476|ref|XP_005853905.1| (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526] >gi|422295160|gb|EKU22459.1| permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 67.0106 bits (162), Expect = 8.703e-8 Identity = 47/145 (32.41%), Postives = 70/145 (48.28%), Query Frame = 0
Query: 284 GISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQA-FGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSA 427
+ PFF + A+ L S++VG+ FSL L S+ +T L + A FGR G +L VGF S++ R QG+ G + VA M LL+ + +I +++GL + I + I+ P LG Y M L L A
Sbjct: 104 AMVPFFPDHAKRYLNADSTIVGVIFSLYPL-SLFLTSLVIGMASARFGRAFVYTSGLILLGGGTVGFGFCNDLTSIMIMRVVQGIGGGCINVAGMALLLQVSINIERDVGLDQAAIGLGYILGPPLGAILYAYMGFRDLNLVLGA 247 The following BLAST results are available for this feature:
BLAST of EWM24167.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 9
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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