rna652, rna652 (mRNA) Nannochloropsis gaditana

Overview
Namerna652
Unique Namerna652
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length719
Alignment locationCM002456.1:85928..87350 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100391g1.3410.mrna
Orig protein idgnl|cribi|Naga_100391g1.3410
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:85928..87350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100391g1gene625Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna652rna652-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30021.1cds652Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna652 ID=rna652|Name=rna652|organism=Nannochloropsis gaditana|type=mRNA|length=719bp
AGGGGGAGGTGCGAGGCCGTACGCGCCTGTGGCTCGTGCCAGTCCAATCC
TTGTCGATGTAATCTATGCCTGTGCCTATTGTCCTGCCTTCGTATCACAG
GGGCCTTGGACGCTGTGTTGGGGGAGCAGGGGCTGCGACTCAACCTCCTC
CTCCGCCTTTGCCCCGTGGTCCCGTATTCCTTTCTGAACTTCGCCATGGG
CTTGACGGCGGCCCGAAGCGAGGATTTCCTCCTCGGTTGCCTCGTCGGCA
TGCTCCCGGCGGTGATTTTGTTGGCCTATGTGGGCGTGGCGGAGGGCGGG
GGGAAGGGAGCGGTGGGCGAGATATTGGAAAGTTTTGGACGACGGCACCC
GATGGAGACACGAGCTGCCTTGGGGTCGGGGGCATTGCTGCTGGTTATTG
CGGGCTGGATTGTATGGCGCGCCGCACGATCAAAAGCCAGGGCGGAGGAG
ATTCGAAAGCAGAGTGTGGTGGATTCGATGGGATGGGAGATGTGACGGGG
GCGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGCCCTGAGGAAA
GTGTACAAAGGAAAGCTGGGCAAGCTCGAAGTAAAGACAGTGTGTTCATC
CCGCCCGCACGCGTGTGAAAGACATCTCTTCCTCATTACTTTCCAGACGG
GAGGGCACCGTCCCTCTCTACGAGCTAGAGACAGCACTCCTTAGGGAACC
ATCGGCTCCTCTCCTCCCC
back to top

protein sequence of rna652

>rna652-protein ID=rna652-protein|Name=rna652|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MPSLPLPALSIKGAKAREYKAFDGGEHNSLPSTFSDPTASASTHANVGHG
DPASTGGVGEAYPTACASAHRPSWGPQGARHSSFGIGNEGLDRSRRGDQE
GRGCCRRMTSFQISYLVVMLASMFYFISDALGSRRVLLWLEGILVSTHPQ
TAGMTTALLLSLGSVMVALGFPTTFLALLGGHVYR
back to top

mRNA from alignment at CM002456.1:85928..87350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna652 ID=rna652|Name=rna652|organism=Nannochloropsis gaditana|type=mRNA|length=1423bp|location=Sequence derived from alignment at CM002456.1:85928..87350- (Nannochloropsis gaditana)
GCAAATTGCCCCGTTTGCGCCGGGAGATGCATGCCTGCACGGGCCCACTA
TCACATAAGGGACTTTACTCGGAATAAGAAGCTCGACCCCGTCTAATTTG
ATTCGCTCATTATTATCCTCTTCCTTATTCTGTTACCGCTCTCGCCCCAT
GTTCCTGCCAGGCTTTGCCTGCCCATCTCCCTGCTTTCACATGTTTTCCT
AAGTGGTAGCACAGGGAGGAGGCGCAAAAAGTGTCACAACGACTAGTGGA
ACCGACCGTTTTATGCCGTCCCTCCCCCTGCCCGCCCTCTCCATAAAGGG
GGCTAAAGCCAGAGAGTACAAAGCATTTGACGGCGGCGAACACAACTCTC
TCCCTTCCACCTTTTCTGATCCCACTGCATCTGCAAGCACTCACGCGAAT
GTTGGGCACGGAGACCCCGCCAGCACTGGCGGGGTTGGAGAGGCCTATCC
CACAGCCTGCGCGAGCGCCCACCGTCCTTCCTGGGGCCCGCAAGGGGCGC
GACACTCGTCTTTCGGGATAGGAAACGAAGGGCTGGACAGGAGCAGAAGA
GGGGATCAGGAAGGCAGGGGTTGCTGTAGGCGCATGACTTCGTTTCAAAT
ATCCTACCTGGTCGTCATGTTGGCAAGTATGTTTTACTTTATCAGCGATG
CCTTGGGGTCTCGCCGGGTGCTGCTCTGGCTGGAAGGCATCTTGGTACGT
GGCAATGAGGGTGCATAAAGGGGCATCTGGGCGCGGGCGGAAGGTGGAAA
AGAGGAGGCGGTGGACGATTCCTCCCTTCCCCTGCCCCCCCCCGGGCCCT
TCCTCCTCCCCGCCCTCTGCCACCACCGACACGATTCTCAGACAGCCGTT
GGATGCACGTGATGCAGTTATCCCCCTTCATGTCCTCTCTTTTCACGTTC
TCTTTCCTCAATCTACCCTTGCTCTGTATTTTTGGAATTATTCCCTTTTC
CAGGTCAGCACGCACCCCCAAACCGCAGGGATGACGACGGCCTTACTCCT
GAGCCTTGGCTCTGTCATGGTGGCGCTGGGCTTTCCCACCACATTTCTCG
CGCTGTTGGGGGGGCATGTGTACAGGTAGGGCTTGAGGGAGGGAGGGAGG
GAGGAAGGGAGGCAGGACGGCCCGGTGTCGGTAGAGTCGTCCTGATGCAA
GTTTGGCTTCCCAGCGTGCTTAGCAGCGTTGCTTTTTGATGCGTCACACT
ATGCATTAGGATGTCGCCTTATTCTCTCACTTCCCCCCTTCTTTCTTACC
TGCGTCGGCTGGGAAGGCCGCCACATCCCCCCCTCCCGGAAGCTCTCTCC
CTCCTCTTTCCTTTGTGCGACTGGGCCCCAGGGCCTCTTTCGGCGCTTTG
CTTCCCGTTCTTTCCCTTCTTCCTCCCCCCCCAACATTTTGCATGTCGCG
CCTTGCGTCCGTTCCCTCTCCCC
back to top

Coding sequence (CDS) from alignment at CM002456.1:85928..87350-

>rna652 ID=rna652|Name=rna652|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at CM002456.1:85928..87350- (Nannochloropsis gaditana)
GTCAGCACGCACCCCCAAACCGCAGGGATGACGACGGCCTTACTCCTGAG
CCTTGGCTCTGTCATGGTGGCGCTGGGCTTTCCCACCACATTTCTCGCGC
TGTTGGGGGGGCATGTGTACAGGTAGATGCCGTCCCTCCCCCTGCCCGCC
CTCTCCATAAAGGGGGCTAAAGCCAGAGAGTACAAAGCATTTGACGGCGG
CGAACACAACTCTCTCCCTTCCACCTTTTCTGATCCCACTGCATCTGCAA
GCACTCACGCGAATGTTGGGCACGGAGACCCCGCCAGCACTGGCGGGGTT
GGAGAGGCCTATCCCACAGCCTGCGCGAGCGCCCACCGTCCTTCCTGGGG
CCCGCAAGGGGCGCGACACTCGTCTTTCGGGATAGGAAACGAAGGGCTGG
ACAGGAGCAGAAGAGGGGATCAGGAAGGCAGGGGTTGCTGTAGGCGCATG
ACTTCGTTTCAAATATCCTACCTGGTCGTCATGTTGGCAAGTATGTTTTA
CTTTATCAGCGATGCCTTGGGGTCTCGCCGGGTGCTGCTCTGGCTGGAAG
GCATCTTGGTCAGCACGCACCCCCAAACCGCAGGGATGACGACGGCCTTA
CTCCTGAGCCTTGGCTCTGTCATGGTGGCGCTGGGCTTTCCCACCACATT
TCTCGCGCTGTTGGGGGGGCATGTGTACAGGTAGATGCCGTCCCTCCCCC
TGCCCGCCCTCTCCATAAAGGGGGCTAAAGCCAGAGAGTACAAAGCATTT
GACGGCGGCGAACACAACTCTCTCCCTTCCACCTTTTCTGATCCCACTGC
ATCTGCAAGCACTCACGCGAATGTTGGGCACGGAGACCCCGCCAGCACTG
GCGGGGTTGGAGAGGCCTATCCCACAGCCTGCGCGAGCGCCCACCGTCCT
TCCTGGGGCCCGCAAGGGGCGCGACACTCGTCTTTCGGGATAGGAAACGA
AGGGCTGGACAGGAGCAGAAGAGGGGATCAGGAAGGCAGGGGTTGCTGTA
GGCGCATGACTTCGTTTCAAATATCCTACCTGGTCGTCATGTTGGCAAGT
ATGTTTTACTTTATCAGCGATGCCTTGGGGTCTCGCCGGGTGCTGCTCTG
GCTGGAAGGCATCTTG
back to top
Synonyms
Publications