rna6519, rna6519 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6519
Unique Name	rna6519
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2242
Alignment location	CM002468.1:708615..710918 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100296g5.9844.mrna
Orig protein id	gnl\|cribi\|Naga_100296g5.9844
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:708615..710918 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100296g5	gene6299	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6519	rna6519-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24170.1	cds6503	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:708615..710918+
coding sequence from alignment at CM002468.1:708615..710918+

mRNA sequence

>rna6519 ID=rna6519|Name=rna6519|organism=Nannochloropsis gaditana|type=mRNA|length=2242bp
CTCGGCCAGGCGTTGCCCTCCCATCGCCCCAGACCGGATCTCTTTGCAAC
ACTGAAGTCGACAAATTGCGCAAAGCATTGAAAGCGGGTAATTCTTACGA
GGGTTGAATACTTTGGGAGGCGTTTAACTGTGGTCCAGGTCTCCTGAGTG
GACATCGACCTCATGCCTGACTTTGGCTTTCAGGTCAACCCGCTTGGGAG
GAGGTTCTTGCGTCCATGTCATCTCCTTTGGACTGTCACATTCGTAGGAA
CGGGAACGGTCCACCAAGAGACGGCATGTATATATAGCTGTGAAGGATAG
GTGCAACTTTGGATGATGATGTTGTCATTGAGACTCAAAGTGATGACTCT
TTATGTATTGAGTTGCTGTAGACTCCAGTATGCCTACCTTCAACCCCGTT
TGCTGCTCGTCGGCCCCTTTCCTAGAGTTTCTTTTGAATTTGATGAATCA
TTTCTCGACATTTGTCTATTCATACACAATAATTCTAGCCATAGGCGTCA
GCATAGCCTTTTGACTTCCAAGACCGCAGCAGTTGACTTGATTCCCCTTC
GGAAGATCGTGATTCAAAGCTTTCAAGAGTCTAGTACAGCATGAGAAGGG
AGCAGGACGGCAGTATAAGCAGTGCAAACGGTCTTGGCAGAGACATAGAG
GCCCATGGACCAGATACCATCCTTTATTATGCACGAGCTGGGGACCTGGA
CGGAATGATGGCCATGGTACAGGAGGACCCGAGCCAAGCGAATTACCAGC
GGATCGTCACCCCCCTTATGTGGGCGAGTTACTGTGGGCACGCGCACATT
GTCTCATTCCTCCTGGAATGCGGCGCGCACATCGACCAGGCGGAGGAAGG
AAAATCACGCACGGCCCTCTACCTAGCCTCGGGACGTGGCCACGTCCATG
TGGTGTCCCTCCTTCTGGAAAAAGGCGCGAACCCGACCTTGAAACGTAAA
GGTGGCTGGTGCCCGTTGTCGGTTGCGGCCAGCGAGGGCCACGTGGGCGT
GGTCCGCGTCCTCTTGGCCAACCCCAGGGTAGACGTGGACTCGAGAGACG
ACGATGGGAGCACGGCCTTGTACCGGGCCGCCCTTTGGGGCTGCGCAGGG
GCGATTCGAGCATTGTTGAAGAAAGGCGGCAACCCCAGGATACCCGGAGG
GGGCGGTTTGTTGCCCGTGGGCGTGGCACGTGCCCGAGGCTACCAGGAGT
GTGTCGATGTCCTGGAGGGGGAGGAGAGGGTGTTTGGACTCGCAAAAGCC
AGGGCTTTGCGGCGGGTGCGCGCGAGGGTGGTTTGTGAGGAGGGAAGAAG
GGGGGGAGGGCGGGCGGGGGAAGGAGGAGGGAAGGAGGGGCAGCAGGGGG
CCAATCCCACGGTGGATGGGCCCGTGGCCATGCTGGAAGAGGGTGAAGCA
GACAAGTCCTTGTCCCCTCCGTCTTCTCCTCCCCCTTTTTCTGCCCTGCT
GCCGGATACTCCGCCTTTCTCTTTCTCCGGACATGAGGCGCTTCCTGTCT
ACCTTTCCAAGCGACCCCTTTTCTCGCCCCTCCCCATCGTCACCCTCCAC
GACGCAGAGCGCTGGGGAAAAAAAAGCGAGGGCGGTAAGAGGGATAAGGG
AGAAGGAGGTGAGGGGGGCAGCGAGGGGATGACCATCTCAGTATCCGCAG
AGGCTCCGAAGGACAGGAGTCGGGCAAAGTTGGGAGCTCGAGAGGAGGGC
AGAGGGGAAGGACGAGCAAGAGGAAAGGCAGGAGAACCGTTTCTGTGGAG
AAGCTGGCTTTGTGGAGGGGGTGGGGCAAACGGGGAGCAGCCTGATGCTG
AGGGATCGACGCCCGTAAGAAGGACGAGACCACAGGGATGTGGGAGTGCC
CCCACTGGTCAAATCCACAGTTCCTTCAATTGGGCGCAGACCAGCGAGGA
AGAAAGGAGCATGGAGTGCATGCAATCGGCCGTGGTGGCGTTGGTGGTTC
GGGATATGAGCTTTGACGTTTTTTTGAACCTGGTGGAGATGATCGTGTAG
CAAGGATGGATGCTGGGGAAAGTAGAAGGAGGAGGCAGAGCCTTGCGCCG
CTGCAGTGATGGGCACCCATGCTCAGCAAAAATTGATTGATTGGAAGATC
ATCTCTTGTTTAATTTTACTTTTTGCGTTAGGGTGGATTGTCTCACTTTG
AATCGGACGAAATCACTTATTGGCCGTAATGGCGACAAGAAACGACCACA
TCATTTAATTTTGAAATGAAGCATCGCATCATTGAAGTTGTC

protein sequence of rna6519

>rna6519-protein ID=rna6519-protein|Name=rna6519|organism=Nannochloropsis gaditana|type=polypeptide|length=364bp
MGGRCSRLPDEQINTPQVPRSSRIKEDCPIHGKNGFIARSSSGDNVVDEE
DRQSSHARKQDVLQKTRLPLRRAFRSRTTNKISGKAEISLLRPAHLYAAG
DVAALQVEVQVPIHKSFEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTV
ELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDF
AGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDMPP
PSDLDSTDHRDHSPRAQCGSDQSSFPGASDGPCDRDPILHGPGSHGRRQS
FHGTPLACGAWGAGLRGGRRGGDGACQDGWPSSFDSTAQGAKFQPPGGPD
PHGQSRAPGCGGSL

mRNA from alignment at CM002468.1:708615..710918+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6519 ID=rna6519|Name=rna6519|organism=Nannochloropsis gaditana|type=mRNA|length=2304bp|location=Sequence derived from alignment at CM002468.1:708615..710918+ (Nannochloropsis gaditana)
gaCCGGCTAGTTTGTTTAATGTTGATAGCCCATCGTATTCGGTAGTCGAC
GCATCCTCGTTTCTGAACGTACTTATCAGCTCAAACACGTTTCCTCTTTG
TACACAGGCAAGACACCATGGGGGGAAGGTGTTCCCGGTTGCCCGACGAG
CAAATCAACACGCCACAGGTATGTAGTACccgaggagagggacagcgGTA
ATGAGCAAAAGTAGACTGGAGCAACGCAGCGTGATATGTATATGACTTTC
ATTGTATAGGACTATCCATTGTCCATTAAACATTAAGTGTTGATATGCTT
GCATTGCTTTTATTTCCGCATGCCATATCATCGGTCACGTAcgtttctct
cccccccttgcagCTTACTACAGAGTCGTACGAAATCCCTTAATGAAAAT
GAGGCGCTTCCACTCACAGATATACTTAACTTGTCTCTCCTCTCTGGTGG
CAGGTTCCGCGCTCGAGTCGTATCAAAGAGGACTGTCCTATTCACGGCAA
GAACGGGTTCATTGCCAGATCCTCGAGTGGCGACAATGttgtggacgagg
aagaccgACAGTCAAGCCACGCACGAAAACAAGATGTGCTGCAGAAAACC
AGGCTCCCCTTGCGAAGGGCCTTCAGGTCTCGTACAACCAACAAGATAag
cgggaaggcggagatCAGCCTGCTCCGACCTGCCCACCTGTACGCTGCCG
GGGATGTGGCCGCATTGCAAGTGGAAGTACAAGTCCCTATCCACAAGTCT
TTCGAGCCGGGAACGAAGGTTTTCATGCCCGATAACGGGTACTGGAAGGA
AAGCTCTGTCTCTGTGCCCGATGGCTTGTCCCCGGGGGACGTCGTCACGG
TGGAATTATTGGCGGAACCGAAACGTTCCAAAATGACGTTAAAGGACGTC
AAAGCCGACATCGAGCTCCGGGTGACGGGTCCCAGCGTGACTCCTGGCGG
ACCAGAGATGATCATTTTGCGGCAATACGTCGCCTTTGACGGTATTGATT
TTGCGGGAGACTTGTTTCCcatcccgctttccccctccttgggaACCGCC
CCTTTACTTCTGTACATTCTGGgggcggagcaggcgggcAAAACCACCTT
TGTCGAGAGCCTGCGCAACGTTTTGGCTTCGGCAGAAACggacatgcccc
ccccctcagaCCTCGATAGTACCGACCACCGAGATCACTCGCCTCGAGCT
CAATGCGGAAGCGATCAGTCCTCGTTTCCGGGCGCCTCTGACGGCCCGTG
TGACAGAGATCCCATCCTCCATGGTCCTGGCTCCCACGGACGCAGACAAA
GCTTCCATGGAACGCCTCTTGCCTGCGGGGCATGGGGCGCTGGTCTTCGT
GGCGGCcgacgaggtggagacggCGCCTGCCAAGATGGCTGGCCTTCAAG
CTTCGATTCAACAGCTCAAGGCGCAAAATTTCAACCCCCTGGTGGTCCTG
ACCCGCATGGACAAAGTAGAGCCCCTGGTTGCGGCGGATCCCTTTAATTG
GTCCCTGAAAAAAGTCTCCCACGTGCGTCGGCGCGCGAGCCAATGTCTGG
GGGTCTCCTGGGCCAATACTCTGGTCTTTGTCCCCTATGCCGCCCCTCGC
CCGGCCATGCGGCCAGAGGTGGCAAAAGCGAGCATGCGCACCGACGTGAT
TatcaaggggaagaaagcgtcCTCGATCTTGGACATGAGGGAGGATACGg
tccgggaggaagggatggagcgGTCCTTTGCCATCGACAAATTGGTGCTT
TTCATCGCCAAGGCGGGTTTGGAAGTGGCCCAAGAGAAAATGGAAGGCAG
GGTGAGAAGAAGCAGTAGCGCTGGGAGCGCAGGTTTGGGGACCTGGACGG
GGGGACGGATCACTGCGACGCCCAAGACGGACATGTCCATGACCAAGACG
GCGCCCTCCGATGCTATGCTTGCGACGCGGCAACAGACGGTAGAATTGGA
cggctccttctcctccaacttCCCGACACTGTCTGCCAGTACCCCTCAGC
CATAACTGTGGGGAAAATATTGCCTTTGTTGCGTAAAAATTGTGTCCTGC
GTAAGCTGGAACATCGTAGTATGCCAAACGATATTCGTATTCGCATGAAC
GGTATACCGTGGGACTGGGGCACCATCTTTGAAGAATGGGGATTCTGTTC
ACCTAAACTGTAGGATCATTGACATGGGGATGGGATCAACTGAAAGCTCC
AAGGTTTTGATTGAGAGAGATTATGAAGTGATGAATGCCGACCACGCGGG
AGCAACGTAGAGGCGGACCTCTGGGGAGGTTGTCAAAACAAAAAATGAAG
CGCT

Coding sequence (CDS) from alignment at CM002468.1:708615..710918+

>rna6519 ID=rna6519|Name=rna6519|organism=Nannochloropsis gaditana|type=CDS|length=2190bp|location=Sequence derived from alignment at CM002468.1:708615..710918+ (Nannochloropsis gaditana)
ATGGGGGGAAGGTGTTCCCGGTTGCCCGACGAGCAAATCAACACGCCACA
GGTTCCGCGCTCGAGTCGTATCAAAGAGGACTGTCCTATTCACGGCAAGA
ACGGGTTCATTGCCAGATCCTCGAGTGGCGACAATGttgtggacgaggaa
gaccgACAGTCAAGCCACGCACGAAAACAAGATGTGCTGCAGAAAACCAG
GCTCCCCTTGCGAAGGGCCTTCAGGTCTCGTACAACCAACAAGATAagcg
ggaaggcggagatCAGCCTGCTCCGACCTGCCCACCTGTACGCTGCCGGG
GATGTGGCCGCATTGCAAGTGGAAGTACAAGTCCCTATCCACAAGTCTTT
CGAGCCGGGAACGAAGGTTTTCATGCCCGATAACGGGTACTGGAAGGAAA
GCTCTGTCTCTGTGCCCGATGGCTTGTCCCCGGGGGACGTCGTCACGGTG
GAATTATTGGCGGAACCGAAACGTTCCAAAATGACGTTAAAGGACGTCAA
AGCCGACATCGAGCTCCGGGTGACGGGTCCCAGCGTGACTCCTGGCGGAC
CAGAGATGATCATTTTGCGGCAATACGTCGCCTTTGACGGTATTGATTTT
GCGGGAGACTTGTTTCCcatcccgctttccccctccttgggaACCGCCCC
TTTACTTCTGTACATTCTGGgggcggagcaggcgggcAAAACCACCTTTG
TCGAGAGCCTGCGCAACGTTTTGGCTTCGGCAGAAACggacatgcccccc
ccctcagaCCTCGATAGTACCGACCACCGAGATCACTCGCCTCGAGCTCA
ATGCGGAAGCGATCAGTCCTCGTTTCCGGGCGCCTCTGACGGCCCGTGTG
ACAGAGATCCCATCCTCCATGGTCCTGGCTCCCACGGACGCAGACAAAGC
TTCCATGGAACGCCTCTTGCCTGCGGGGCATGGGGCGCTGGTCTTCGTGG
CGGCcgacgaggtggagacggCGCCTGCCAAGATGGCTGGCCTTCAAGCT
TCGATTCAACAGCTCAAGGCGCAAAATTTCAACCCCCTGGTGGTCCTGAC
CCGCATGGACAAAGTAGAGCCCCTGGTTGCGGCGGATCCCTTTAAATGGG
GGGAAGGTGTTCCCGGTTGCCCGACGAGCAAATCAACACGCCACAGGTTC
CGCGCTCGAGTCGTATCAAAGAGGACTGTCCTATTCACGGCAAGAACGGG
TTCATTGCCAGATCCTCGAGTGGCGACAATGttgtggacgaggaagaccg
ACAGTCAAGCCACGCACGAAAACAAGATGTGCTGCAGAAAACCAGGCTCC
CCTTGCGAAGGGCCTTCAGGTCTCGTACAACCAACAAGATAagcgggaag
gcggagatCAGCCTGCTCCGACCTGCCCACCTGTACGCTGCCGGGGATGT
GGCCGCATTGCAAGTGGAAGTACAAGTCCCTATCCACAAGTCTTTCGAGC
CGGGAACGAAGGTTTTCATGCCCGATAACGGGTACTGGAAGGAAAGCTCT
GTCTCTGTGCCCGATGGCTTGTCCCCGGGGGACGTCGTCACGGTGGAATT
ATTGGCGGAACCGAAACGTTCCAAAATGACGTTAAAGGACGTCAAAGCCG
ACATCGAGCTCCGGGTGACGGGTCCCAGCGTGACTCCTGGCGGACCAGAG
ATGATCATTTTGCGGCAATACGTCGCCTTTGACGGTATTGATTTTGCGGG
AGACTTGTTTCCcatcccgctttccccctccttgggaACCGCCCCTTTAC
TTCTGTACATTCTGGgggcggagcaggcgggcAAAACCACCTTTGTCGAG
AGCCTGCGCAACGTTTTGGCTTCGGCAGAAACggacatgccccccccctc
agaCCTCGATAGTACCGACCACCGAGATCACTCGCCTCGAGCTCAATGCG
GAAGCGATCAGTCCTCGTTTCCGGGCGCCTCTGACGGCCCGTGTGACAGA
GATCCCATCCTCCATGGTCCTGGCTCCCACGGACGCAGACAAAGCTTCCA
TGGAACGCCTCTTGCCTGCGGGGCATGGGGCGCTGGTCTTCGTGGCGGCc
gacgaggtggagacggCGCCTGCCAAGATGGCTGGCCTTCAAGCTTCGAT
TCAACAGCTCAAGGCGCAAAATTTCAACCCCCTGGTGGTCCTGACCCGCA
TGGACAAAGTAGAGCCCCTGGTTGCGGCGGATCCCTTTAA

Synonyms

Publications