EWM24170.1, cds6503 (CDS) Nannochloropsis gaditana

Overview
NameEWM24170.1
Unique Namecds6503
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:708732..708782 +
Alignment locationCM002468.1:709068..710111 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24170.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100296g5.9844.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:708732..708782 +
CM002468.1supercontigCM002468.1:709068..710111 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24170.1 vs. NCBI_GenBank
Match: gi|585105544|gb|EWM24170.1| (hypothetical protein Naga_100296g5 [Nannochloropsis gaditana])

HSP 1 Score: 738.799 bits (1906), Expect = 0.000e+0
Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 0 
Query:    1 MGGRCSRLPDEQINTPQVPRSSRIKEDCPIHGKNGFIARSSSGDNVVDEEDRQSSHARKQDVLQKTRLPLRRAFRSRTTNKISGKAEISLLRPAHLYAAGDVAALQVEVQVPIHKSFEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDMPPPSDLDSTDHRDHSPRAQCGSDQSSFPGASDGPCDRDPILHGPGSHGRRQSFHGTPLACGAWGAGLRGGRRGGDGACQDGWPSSFDSTAQGAKFQPPGGPDPHGQSRAPGCGGSL 364
            MGGRCSRLPDEQINTPQVPRSSRIKEDCPIHGKNGFIARSSSGDNVVDEEDRQSSHARKQDVLQKTRLPLRRAFRSRTTNKISGKAEISLLRPAHLYAAGDVAALQVEVQVPIHKSFEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDMPPPSDLDSTDHRDHSPRAQCGSDQSSFPGASDGPCDRDPILHGPGSHGRRQSFHGTPLACGAWGAGLRGGRRGGDGACQDGWPSSFDSTAQGAKFQPPGGPDPHGQSRAPGCGGSL
Sbjct:    1 MGGRCSRLPDEQINTPQVPRSSRIKEDCPIHGKNGFIARSSSGDNVVDEEDRQSSHARKQDVLQKTRLPLRRAFRSRTTNKISGKAEISLLRPAHLYAAGDVAALQVEVQVPIHKSFEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDMPPPSDLDSTDHRDHSPRAQCGSDQSSFPGASDGPCDRDPILHGPGSHGRRQSFHGTPLACGAWGAGLRGGRRGGDGACQDGWPSSFDSTAQGAKFQPPGGPDPHGQSRAPGCGGSL 364
[Close]
BLAST of EWM24170.1 vs. NCBI_GenBank
Match: gi|553184128|ref|XP_005854034.1| (hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526] >gi|422295028|gb|EKU22327.1| hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 515.383 bits (1326), Expect = 1.348e-178
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0 
Query:    1 MGGRCSRLPDEQINTPQVPRSSRIKEDCPIHGKNGFIARSSSGDNVVDEEDRQSSHARKQDVLQKTRLPLRRAFRSRTTNKISGKAEISLLRPAHLYAAGDVAALQVEVQVPIHKSFEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDMPPP 251
            MGGRCSRLPDEQINTPQVPRSSRIKEDCPIHGKNGFIARSSSGDNVVDEEDRQSSHARKQDVLQKTRLPLRRAFRSRTTNKISGKAEISLLRPAHLYAAGDVAALQVEVQVPIHKSFEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDMPPP
Sbjct:    1 MGGRCSRLPDEQINTPQVPRSSRIKEDCPIHGKNGFIARSSSGDNVVDEEDRQSSHARKQDVLQKTRLPLRRAFRSRTTNKISGKAEISLLRPAHLYAAGDVAALQVEVQVPIHKSFEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDMPPP 251
The following BLAST results are available for this feature:
BLAST of EWM24170.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105544|gb|EWM24170.1|0.000e+0100.00hypothetical protein Naga_100296g5 [Nannochloropsi... [more]
gi|553184128|ref|XP_005854034.1|1.348e-178100.00hypothetical protein NGA_0458600 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6519rna6519Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications