rna6515, rna6515 (mRNA) Nannochloropsis gaditana

Overview
Namerna6515
Unique Namerna6515
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length381
Alignment locationCM002468.1:693759..694385 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101672g1.6001.mrna
Orig protein idgnl|cribi|Naga_101672g1.6001
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:693759..694385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101672g1gene6295Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6515rna6515-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24174.1cds6499Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6515 ID=rna6515|Name=rna6515|organism=Nannochloropsis gaditana|type=mRNA|length=381bp
ATGCTCGTGTCTGTAAGACGTGTTGTGGCGTTTTACGTTCGGGACCGGAG
ATCATACGTCGACCCTAACCTCATGCGGTCAGCCATAGTCCTGGGAGGCT
TCATGGCTTTCCTGCTGGAGGTTTCTCACGCCTTCACGAGACCGGCACCC
GTTCACATGTCCATAGGACATGCAGCGCCCTCCAACACCGCGGACTCCCT
CCGGCAGACTGTCGACCTCGCCTTGTCTCCCGATAGCAAGAAGCGTAAAA
TCTCCCTCTTGGGCTCCACAGGCTCCATCGGCACGCAGACGTTGGACATT
GTGCGCGAACGGGGCGATATCTACGAGGTGACGGCCCTTGCAGCAGGACG
GAGGGCCTATCGAAAGCCACGCCACGTGTGA
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protein sequence of rna6515

>rna6515-protein ID=rna6515-protein|Name=rna6515|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDI
VAVDAWARVRVDELAEKMKYVAA
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mRNA from alignment at CM002468.1:693759..694385+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6515 ID=rna6515|Name=rna6515|organism=Nannochloropsis gaditana|type=mRNA|length=627bp|location=Sequence derived from alignment at CM002468.1:693759..694385+ (Nannochloropsis gaditana)
CAGCTGGCGTACGCGGCGGGCAGGACGGGGGGAACGATGACGGCCGCCCT
CAACGCCGCAAACGAGCGCGCGAACGAAATCTTCCGGCAGGAGAAGATTG
GCTACCTGGACattggtgagggaggaagggagggagggaggggggaggga
gggagagagggagggaggataggtTGGATAgatgtggagggaagggagcg
agaggcGTAGGGCAAGAGCGATCACTTCTATTTTTGCCGCGACTTTGACC
Acctgcccgctctccctccctccctctgtcccgccctctattcctcccct
cctaaGCCAAAGTCGTGGAGGGTGCGATGGAGAGCCACAAGAAGGATTGG
AAGGAGGCACCCTCTCTGGAGGACATTGTGGCCGTGGACGCGTGGGCCAG
AGTGCGGGTGGATGAGCTTGCGGAAAAAATGAAGTATGTGGCGgcgtaga
gagggagggaaggagggaggggagggagggagggagggagggaaggaggg
aggcaaggaagcgCCGGGGGGGCTGtagaagggagaggctggggatggag
ggatgggaagggatgaagggcgggggggtggaTGGCAACGAGTACGGAGG
CAACATAAAACAAAGACGGGAAAGTGG
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Coding sequence (CDS) from alignment at CM002468.1:693759..694385+

>rna6515 ID=rna6515|Name=rna6515|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at CM002468.1:693759..694385+ (Nannochloropsis gaditana)
ATGACGGCCGCCCTCAACGCCGCAAACGAGCGCGCGAACGAAATCTTCCG
GCAGGAGAAGATTGGCTACCTGGACattgCCAAAGTCGTGGAGGGTGCGA
TGGAGAGCCACAAGAAGGATTGGAAGGAGGCACCCTCTCTGGAGGACATT
GTGGCCGTGGACGCGTGGGCCAGAGTGCGGGTGGATGAGCTTGCGGAAAA
AATGAAGTATGTGGCGgcgtagATGACGGCCGCCCTCAACGCCGCAAACG
AGCGCGCGAACGAAATCTTCCGGCAGGAGAAGATTGGCTACCTGGACatt
gCCAAAGTCGTGGAGGGTGCGATGGAGAGCCACAAGAAGGATTGGAAGGA
GGCACCCTCTCTGGAGGACATTGTGGCCGTGGACGCGTGGGCCAGAGTGC
GGGTGGATGAGCTTGCGGAAAAAATGAAGTATGTGGCGgcgtag
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Synonyms
Publications