EWM24174.1, cds6499 (CDS) Nannochloropsis gaditana

Overview
NameEWM24174.1
Unique Namecds6499
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:693795..693873 +
Alignment locationCM002468.1:694065..694207 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24174.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101672g1.6001.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:693795..693873 +
CM002468.1supercontigCM002468.1:694065..694207 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0008299isoprenoid biosynthetic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0046872metal ion binding
GO:00306041-deoxy-D-xylulose-5-phosphate reductoisomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR003821DXP_reductoisomerase
IPR026877DXPR_C
Homology
BLAST of EWM24174.1 vs. NCBI_GenBank
Match: gi|585105550|gb|EWM24174.1| (hypothetical protein Naga_101672g1 [Nannochloropsis gaditana])

HSP 1 Score: 145.591 bits (366), Expect = 2.904e-44
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query:    1 MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDELAEKMKYVAA 73
            MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDELAEKMKYVAA
Sbjct:    1 MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDELAEKMKYVAA 73          
BLAST of EWM24174.1 vs. NCBI_GenBank
Match: gi|298706797|emb|CBJ29720.1| (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 90.8929 bits (224), Expect = 6.985e-20
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0
Query:    1 MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDELAEKMK 69
            MTAA+NAANERANEIFR+E I ++DI +V+E  ME+HK D    PS+EDIV VD WAR +VDE A ++K
Sbjct:  357 MTAAMNAANERANEIFRKEVISFVDIPRVIEVVMEAHKADLMATPSIEDIVNVDLWARGKVDEAAAQLK 425          
BLAST of EWM24174.1 vs. NCBI_GenBank
Match: gi|115381248|gb|ABI96273.1| (chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Hanusia phi])

HSP 1 Score: 87.0409 bits (214), Expect = 2.215e-18
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0
Query:    1 MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDE 63
            MTA LNAANE+ANE+FR  +IGYLDI KV+E AME+HK D    PSLEDIV +D WAR  V E
Sbjct:  397 MTAVLNAANEQANEMFRNGEIGYLDIFKVIEKAMEAHKADLSLKPSLEDIVEIDGWARKFVKE 459          
BLAST of EWM24174.1 vs. NCBI_GenBank
Match: gi|551642935|ref|XP_005824263.1| (1-deoxy-D-xylulose 5-phosphate reductoisomerase [Guillardia theta CCMP2712] >gi|428168337|gb|EKX37283.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Guillardia theta CCMP2712])

HSP 1 Score: 86.2705 bits (212), Expect = 4.204e-18
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0
Query:    1 MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDE 63
            MTA LNAANE+ANE+FR  +IGYLDI KV+E AME+HK D    PSL+DIV +D WAR  V E
Sbjct:  396 MTAVLNAANEQANEMFRNGEIGYLDIFKVIEKAMEAHKSDLSMKPSLDDIVEIDGWARNFVKE 458          
BLAST of EWM24174.1 vs. NCBI_GenBank
Match: gi|115381244|gb|ABI96271.1| (chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Prymnesium parvum])

HSP 1 Score: 80.1073 bits (196), Expect = 5.319e-16
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0
Query:    1 MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDELAEKMK 69
            MT ALNAANE ANE+FR  K  +  I KV+E  ME+HK D+K  PSLEDI+ +D+WAR +V E A +++
Sbjct:  391 MTCALNAANEMANELFRAGKFDFFGIPKVIEQTMEAHKADFKADPSLEDILEIDSWARRQVVEEAARLE 459          
BLAST of EWM24174.1 vs. NCBI_GenBank
Match: gi|676388439|ref|XP_009037498.1| (hypothetical protein AURANDRAFT_2913, partial [Aureococcus anophagefferens] >gi|323451843|gb|EGB07719.1| hypothetical protein AURANDRAFT_2913, partial [Aureococcus anophagefferens])

HSP 1 Score: 78.9518 bits (193), Expect = 1.111e-15
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0
Query:    1 MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWAR 58
            MT ALNAANE+ANE+FR+    YLDI K +E AME+HK D+   PSL+DI+ VD WAR
Sbjct:  335 MTGALNAANEQANEMFREGAFDYLDIPKAIEAAMENHKSDFIAKPSLQDIIDVDLWAR 392          
BLAST of EWM24174.1 vs. NCBI_GenBank
Match: gi|209402475|gb|ACI45960.1| (putative plastid 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Pyropia yezoensis])

HSP 1 Score: 77.411 bits (189), Expect = 5.137e-15
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 0
Query:    2 TAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDELAEKMKYV 71
            TA +NAANE A E+FRQ+K+ YL I K++E  +++H+ DW   PSL+DIVA+D++AR  V+   +  +Y+
Sbjct:  356 TAVINAANEAAVELFRQDKVHYLAIPKLIEATLDAHRSDWLANPSLDDIVALDSYARTVVNGFVDAGRYL 425          
BLAST of EWM24174.1 vs. NCBI_GenBank
Match: gi|115381252|gb|ABI96275.1| (chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Pyropia yezoensis])

HSP 1 Score: 77.411 bits (189), Expect = 5.344e-15
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 0
Query:    2 TAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDELAEKMKYV 71
            TA +NAANE A E+FRQ+K+ YL I K++E  +++H+ DW   PSL+DIVA+D++AR  V+   +  +Y+
Sbjct:  356 TAVINAANEAAVELFRQDKVHYLAIPKLIEATLDAHRSDWLANPSLDDIVALDSYARTVVNGFVDAGRYL 425          
BLAST of EWM24174.1 vs. NCBI_GenBank
Match: gi|922856925|gb|KOO25229.1| (1-deoxy-d-xylulose 5-phosphate reductoisomerase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 77.411 bits (189), Expect = 5.475e-15
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 0
Query:    1 MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDELAEKM 68
            MT ALNAANE ANE+FR     +  I KV+E  ME+H+ D+ + P+LEDIV VDAWAR +V   A+++
Sbjct:  394 MTGALNAANEMANELFRAGSFDFFGIPKVIEKTMEAHQPDFLQNPTLEDIVRVDAWAREQVKAEAKRL 461          
BLAST of EWM24174.1 vs. NCBI_GenBank
Match: gi|938303699|gb|KPQ37196.1| (1-deoxy-D-xylulose-5-phosphate reductoisomerase Dxr [Phormidesmis priestleyi Ana])

HSP 1 Score: 76.6406 bits (187), Expect = 8.453e-15
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 0
Query:    1 MTAALNAANERANEIFRQEKIGYLDIAKVVEGAMESHKKDWKEAPSLEDIVAVDAWARVRVDELAEKMKYVAA 73
            MTA LNAANE+A  +F +EKI YL+I KV+E   + H+ D   AP+L+DI+AVD+WAR  V E A  +  V A
Sbjct:  321 MTAVLNAANEQAVALFLEEKIHYLEIPKVIEKVCDRHRSDLNTAPNLDDILAVDSWARTAVSEAAANLTAVIA 393          
The following BLAST results are available for this feature:
BLAST of EWM24174.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105550|gb|EWM24174.1|2.904e-44100.00hypothetical protein Naga_101672g1 [Nannochloropsi... [more]
gi|298706797|emb|CBJ29720.1|6.985e-2062.321-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
gi|115381248|gb|ABI96273.1|2.215e-1866.67chloroplast 1-deoxy-D-xylulose 5-phosphate reducto... [more]
gi|551642935|ref|XP_005824263.1|4.204e-1865.081-deoxy-D-xylulose 5-phosphate reductoisomerase [G... [more]
gi|115381244|gb|ABI96271.1|5.319e-1655.07chloroplast 1-deoxy-D-xylulose 5-phosphate reducto... [more]
gi|676388439|ref|XP_009037498.1|1.111e-1562.07hypothetical protein AURANDRAFT_2913, partial [Aur... [more]
gi|209402475|gb|ACI45960.1|5.137e-1547.14putative plastid 1-deoxy-D-xylulose 5-phosphate re... [more]
gi|115381252|gb|ABI96275.1|5.344e-1547.14chloroplast 1-deoxy-D-xylulose 5-phosphate reducto... [more]
gi|922856925|gb|KOO25229.1|5.475e-1552.941-deoxy-d-xylulose 5-phosphate reductoisomerase [C... [more]
gi|938303699|gb|KPQ37196.1|8.453e-1552.051-deoxy-D-xylulose-5-phosphate reductoisomerase Dx... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6515rna6515Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications