rna6514, rna6514 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6514
Unique Name	rna6514
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2399
Alignment location	CM002468.1:691723..692934 +

Link to JBrowse

Properties


Property Name	Value
Product	1-deoxy-d-xylulose 5-phosphate reductoisomerase
Orig transcript id	gnl\|cribi\|Naga_100955g2.10485.mrna
Orig protein id	gnl\|cribi\|Naga_100955g2.10485
Gene	DXR
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:691723..692934 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
DXR	gene6294	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6514	rna6514-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24175.1	cds6498	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:691723..692934+
coding sequence from alignment at CM002468.1:691723..692934+

mRNA sequence

>rna6514 ID=rna6514|Name=rna6514|organism=Nannochloropsis gaditana|type=mRNA|length=2399bp
TGCCGACTAAAAAATGATACGATCCCGGTCTTAGCACGCGCGCGATTATT
GACCAACCTGCGTGACCGGAAATAGCGTGCAAGACAACAAGTGCCTCTCG
CTGCCCTCCCTCCCCCTGTCAGCTATTTCTTCCTTAAAACACTCATCGAT
AATGTACCCCGAACGTAAAACGCCACAACACGTCTTACAGACACGAGCAT
GGATGGTGAAAATTTTGCCACGTGGTGTTATTTCCCTTTGCGGAGCGCAT
GACCATCCCTTTGCCACTTTTCTACTGCCTACTTGTGTGGGCCGTTGCCT
CCCTCATACGATGCCGCCGACAACGACAAAATGCTTCCCCCTGCGTGTAT
CGCTACGGCCGTTGCACGGTCAGCCTCACCTCTTTGGCTATCGTTGGTGA
AATCAAGGCCTCCGGATCTCGGTCTGCCTCCTCTCCTGCACTCCCTCTCC
CCTCCGTCCTACCCCTCGCCCGTCATCAAGCTCCAAGATCCCGTAAAGCT
TGGTGCCAGGGCCAAAATTTTAGCGTCCTTGTCTTCAGCGTCGGTCAAAT
CCTCGTCTGCCTTTTTCTGGCCTGGAATCTTGGATATACCCTCCTCCACT
CGACCTTCACGTGGCCCCGACTCGGCCCTTCCATCTCCCTCCCATCCCAT
CACAGCCCGAACCTCCCCGCAGAGAGACCACGCCCACGCCGTCTATCCAC
CGCCTCCTCGTCCATGTCTTCATTCCCGGCCTCCCCTTCCGGTCCCACCC
ACCCCCCGTCCTCCACCGCCTTTCACGTCGCCACTCGTCTCCGCCCCCTC
TCCCTCCTCTCTCCCGCCACCGGCCACAACACCTTAACTTCCTCCGCGCC
CAGCTGGTTTATCCTCTGGCTGGCTTCCTTCCTCTCTCTCTCCATCCATG
AATGGGGCCACGCGCGCCAGGCAGTCAAAGAAGGCATCGGCTATCAGGCC
ATCGGGGTTTATTTTGCCTTCGGCCTTTTCCCCGGCGCATACGTCATCCT
CGATCCCTTCCTCCTTCGGGCCCTCCCTCCTCTCGCACAGCTTCGCATTC
TCGCCGCCGGTGTCTGGCAGAACCTCCTTCTCTGCCTCTTCACCGGCCTC
CTCCTCTTCTTCAACCTCCTCCCCTCCCTCCTGAGCACTCCCACCTCCGG
ACTCCTCTTCCTCCCTCCCCCCCTCCCCCCCTCCTCGCCCCTCGCCTCCC
TATTCCGCCCCGGCCATGTCCTTGCTTCCCTCCAAGACCTTTCTACCCCT
TCCCTCCCTGCCTGGGAGGAAGCCGTTCAAATTCAAATTGAAAAAATCTC
CCAGCGGGCCAGTGCCTTCCGGAACGGCATCCCTTCTCCTCACGAAGCCA
ATGCCACCGTCACCCTCCTCCTTCACGCGCTTCCTCCTCCCACCCCTCCC
TCCACCACGTCCCCCTTCTCGTCGAAGATCGAGGCTGTGGAGCGGACCGG
CCTCCTCCAAGCCGACACCTTCTGCACCTCCCTTCCTCCCTTCGCTCCTC
ATCACTTCCAGCAGGAAGGAAGAGGGCGCCTCCCCACATGCTGCACCTTC
GAAGCCCTCACCGGCCAGGGGCGAGACAGGAAGAGGGGTGCGGGGGAGGA
GGAGGAAGGGCGGGACACTACATGCTTCGCTGCCTACGACCTCGGCGTCG
GCACCTCCTCCCTTCCCTCCTCCTCCTCCTCCCTCTTTCCTCATCATTCC
TCCTTCGTCACCCTCGCCTGCCTTCCTGCCCGGGACGTCATTCTGCACTC
CACACTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCGCATCTTC
CCTTCTGCTTCCGGCCAGTGACCCTTCCCCCCAACATCCTCCTCAAACTC
ACCCTGGCCTCCGACCAGGTCCTAGTCTATGAAGGTCCCCTTTCCCCCTT
CCTCCCTCCCGCCCTTCCCCCCTCCCTCCTCACCGACCGGCAGCCATCCC
CGTGGCTGCGGGCCCTTCTTCCTCCCCCCCTTGCACGTGCTCTCCCTCCC
TTCCTCCTCCAATGGACAGCGGCTGCCCTCGACGTGTCTTTCTCCGTCGC
TCTCCTTAACTTGATCCCTTTCCCGCCTTTGGATGGGGCGCGGGTGCTGG
CGCTATTGGCCTTGCTGGGAGGACGGGGGAGAGGGGGAGGGAGGAGGAGG
GGGGGGATGGGGGGCAGGTACCGATGGTTGATAGGAGGGATAGGTTTGCT
CGTGGTATTGAATGGGCTCTTCACAATGCTGGCTATGTTTGGGTAAGAGG
AGGAGGAGGTGGAGAAGGAGGAGAAGAAGAAGGAAAAAGGGGGAAAGCCC
TCATGGCGTATGTACTTGCAAAGGAATATTGTAACCGTAATGTGACCGT

protein sequence of rna6514

>rna6514-protein ID=rna6514-protein|Name=rna6514|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MLVSVRRVVAFYVRDRRSYVDPNLMRSAIVLGGFMAFLLEVSHAFTRPAP
VHMSIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDI
VRERGDIYEVTALAAGRRAYRKPRHV

mRNA from alignment at CM002468.1:691723..692934+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6514 ID=rna6514|Name=rna6514|organism=Nannochloropsis gaditana|type=mRNA|length=1212bp|location=Sequence derived from alignment at CM002468.1:691723..692934+ (Nannochloropsis gaditana)
ATGCTCGTGTCTGTAAGACGTGTTGTGGCGTTTTACGTTCGGGGTACATT
ATCGATGAGTGTTTTAAGGAAGAAATAGctgacagggggagggagggcag
cgagaGGCACTTGTTGTCTTGCACGCTATTTCCGGTCACGCAGGTTGGTC
AATAATCGCGCGCGTGCTAAGACCGGGATCGTATCATTTTTTAGTCGGCA
ATGATACACAATGCATGCCCGTGTTAAAACAATTTTGACGGCGTCAAGGT
CATGGTAATGTGGTAAGGGCTaaggcgagcaggaggaagtgagcgagggg
aagggagatcTTGTCTAGGAACTTCCCGACGCATTAGCCCGTTTGTGCCA
CAGAAGACGCCGCGCACGCTTCTTATTGGAGTTTGGGAACAGGTTTACCG
TGGTGATGGCCGTCACATTCATTTCCCCTTCTTACAAACCCGATTTCAAT
CCACAGACCGGAGATCATACGTCGACCCTAACCTCATGCGGTCAGCCATA
GTCCTGGGAGGCTTCATGGCTTTCCTGCTGGAGGTTTCTCACGCCTTCAC
GAGACCGGCACCCGTTCACATGTCCATAGGACATGCAGCGCCCTGTACGT
GCCATTTTCTTGAGGGGAGGTTTGTGGTCGAGGAAAACGGAGGACGCGTT
CTAGGAGTTACACCCGACCGATCCTTCTGCAAGTCCCTGCACATCCCCCT
CATCAACGAGAATAAGGGGTGGTGTGCTTTTATTTGTCTATGAAACGCAC
CTTCCATGAAGTATAAGCACATCAACCTTGTTGTGGGTGACGCTAACTCT
CTGTATTTCCACTTTttgcgtcctcctttccagccAACACCGCGGACTCC
CTCCGGCAGACTGTCGACCTCGCCTTGTCTCCCGATAGCAAGAAGGTACC
TGCCCTTTCCTTACCTTCCCCGCACGCATTTTGACTATCCCATGCTCTGG
TTTTTCACATTCCTCTTCTACCTTTCTTTGCCAGCGTAAAATCTCCCTCT
TGGGCTCCACAGGCTCCATCGGCACGCAGACGTTGGACATTGTGCGCGAA
CGGGGCGATATCTACGAGGTGACGGCCCTTGCAGCAGGTGCGCATACGAt
tgaaagaagggggaaagcacCGGTTATGGTGGGAGAATCAAAACCAAGTC
GATGGGTGTCTTCACTCGCTCGGCCAGGACGGAGGGCCTATCGAAAGCCA
CGCCACGTgtga

Coding sequence (CDS) from alignment at CM002468.1:691723..692934+

>rna6514 ID=rna6514|Name=rna6514|organism=Nannochloropsis gaditana|type=CDS|length=1905bp|location=Sequence derived from alignment at CM002468.1:691723..692934+ (Nannochloropsis gaditana)
ATGCTCGTGTCTGTAAGACGTGTTGTGGCGTTTTACGTTCGGGACCGGAG
ATCATACGTCGACCCTAACCTCATGCGGTCAGCCATAGTCCTGGGAGGCT
TCATGGCTTTCCTGCTGGAGGTTTCTCACGCCTTCACGAGACCGGCACCC
GTTCACATGTCCATAGGACATGCAGCGCCCTccAACACCGCGGACTCCCT
CCGGCAGACTGTCGACCTCGCCTTGTCTCCCGATAGCAAGAAGCGTAAAA
TCTCCCTCTTGGGCTCCACAGGCTCCATCGGCACGCAGACGTTGGACATT
GTGCGCGAACGGGGCGATATCTACGAGGTGACGGCCCTTGCAGCAGGACG
GAGGGCCTATCGAAAGCCACGCCACGTgtgaATGCTCGTGTCTGTAAGAC
GTGTTGTGGCGTTTTACGTTCGGGACCGGAGATCATACGTCGACCCTAAC
CTCATGCGGTCAGCCATAGTCCTGGGAGGCTTCATGGCTTTCCTGCTGGA
GGTTTCTCACGCCTTCACGAGACCGGCACCCGTTCACATGTCCATAGGAC
ATGCAGCGCCCTccAACACCGCGGACTCCCTCCGGCAGACTGTCGACCTC
GCCTTGTCTCCCGATAGCAAGAAGCGTAAAATCTCCCTCTTGGGCTCCAC
AGGCTCCATCGGCACGCAGACGTTGGACATTGTGCGCGAACGGGGCGATA
TCTACGAGGTGACGGCCCTTGCAGCAGGACGGAGGGCCTATCGAAAGCCA
CGCCACGTgtgaATGCTCGTGTCTGTAAGACGTGTTGTGGCGTTTTACGT
TCGGGACCGGAGATCATACGTCGACCCTAACCTCATGCGGTCAGCCATAG
TCCTGGGAGGCTTCATGGCTTTCCTGCTGGAGGTTTCTCACGCCTTCACG
AGACCGGCACCCGTTCACATGTCCATAGGACATGCAGCGCCCTccAACAC
CGCGGACTCCCTCCGGCAGACTGTCGACCTCGCCTTGTCTCCCGATAGCA
AGAAGCGTAAAATCTCCCTCTTGGGCTCCACAGGCTCCATCGGCACGCAG
ACGTTGGACATTGTGCGCGAACGGGGCGATATCTACGAGGTGACGGCCCT
TGCAGCAGGACGGAGGGCCTATCGAAAGCCACGCCACGTgtgaATGCTCG
TGTCTGTAAGACGTGTTGTGGCGTTTTACGTTCGGGACCGGAGATCATAC
GTCGACCCTAACCTCATGCGGTCAGCCATAGTCCTGGGAGGCTTCATGGC
TTTCCTGCTGGAGGTTTCTCACGCCTTCACGAGACCGGCACCCGTTCACA
TGTCCATAGGACATGCAGCGCCCTccAACACCGCGGACTCCCTCCGGCAG
ACTGTCGACCTCGCCTTGTCTCCCGATAGCAAGAAGCGTAAAATCTCCCT
CTTGGGCTCCACAGGCTCCATCGGCACGCAGACGTTGGACATTGTGCGCG
AACGGGGCGATATCTACGAGGTGACGGCCCTTGCAGCAGGACGGAGGGCC
TATCGAAAGCCACGCCACGTgtgaATGCTCGTGTCTGTAAGACGTGTTGT
GGCGTTTTACGTTCGGGACCGGAGATCATACGTCGACCCTAACCTCATGC
GGTCAGCCATAGTCCTGGGAGGCTTCATGGCTTTCCTGCTGGAGGTTTCT
CACGCCTTCACGAGACCGGCACCCGTTCACATGTCCATAGGACATGCAGC
GCCCTccAACACCGCGGACTCCCTCCGGCAGACTGTCGACCTCGCCTTGT
CTCCCGATAGCAAGAAGCGTAAAATCTCCCTCTTGGGCTCCACAGGCTCC
ATCGGCACGCAGACGTTGGACATTGTGCGCGAACGGGGCGATATCTACGA
GGTGACGGCCCTTGCAGCAGGACGGAGGGCCTATCGAAAGCCACGCCACG
Tgtga

Synonyms

Publications