EWM24175.1, cds6498 (CDS) Nannochloropsis gaditana

Overview
NameEWM24175.1
Unique Namecds6498
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:691723..691765 +
Alignment locationCM002468.1:692179..692316 +
Alignment locationCM002468.1:692556..692617 +
Alignment locationCM002468.1:692707..692809 +
Alignment locationCM002468.1:692900..692934 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24175.1
Product1-deoxy-d-xylulose 5-phosphate reductoisomerase
Orig transcript idgnl|cribi|Naga_100955g2.10485.mrna
GeneDXR
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:691723..691765 +
CM002468.1supercontigCM002468.1:692179..692316 +
CM002468.1supercontigCM002468.1:692556..692617 +
CM002468.1supercontigCM002468.1:692707..692809 +
CM002468.1supercontigCM002468.1:692900..692934 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0008299isoprenoid biosynthetic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0046872metal ion binding
GO:00306041-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GO:0070402NADPH binding
Vocabulary: INTERPRO
TermDefinition
IPR003821DXP_reductoisomerase
IPR016040NAD(P)-bd_dom
IPR013512DXP_reductoisomerase_N
Homology
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|585105553|gb|EWM24175.1| (1-deoxy-d-xylulose 5-phosphate reductoisomerase [Nannochloropsis gaditana])

HSP 1 Score: 253.832 bits (647), Expect = 2.120e-85
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query:    1 MLVSVRRVVAFYVRDRRSYVDPNLMRSAIVLGGFMAFLLEVSHAFTRPAPVHMSIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAGRRAYRKPRHV 126
            MLVSVRRVVAFYVRDRRSYVDPNLMRSAIVLGGFMAFLLEVSHAFTRPAPVHMSIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAGRRAYRKPRHV
Sbjct:    1 MLVSVRRVVAFYVRDRRSYVDPNLMRSAIVLGGFMAFLLEVSHAFTRPAPVHMSIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAGRRAYRKPRHV 126          
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|298706797|emb|CBJ29720.1| (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 73.559 bits (179), Expect = 8.506e-13
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 0
Query:   58 AAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAG 116
            A+P NT ++ ++T+DLAL     K+KI+LLGSTGSIGTQTLDI RE+ + +EV +LAAG
Sbjct:   10 ASPVNTRETFQRTMDLALEETGAKKKIALLGSTGSIGTQTLDICREKPENFEVVSLAAG 68          
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|873240278|emb|CEL93618.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 68.1662 bits (165), Expect = 7.829e-11
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   46 TRPAPVHMSI---GHAAPSNTADSLRQTVDLALSP-DSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAA 115
            TR  P+  S+    HAAP+ + +S++ T D A +  +S KR+ISLLGSTGSIGTQTLDI+RER   +E+  LAA
Sbjct:   50 TRRRPIASSLTRMAHAAPTGSEESMKATFDEATNGVESFKRRISLLGSTGSIGTQTLDIIRERPQNFELVGLAA 123          
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|115381244|gb|ABI96271.1| (chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Prymnesium parvum])

HSP 1 Score: 64.6994 bits (156), Expect = 9.780e-10
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0
Query:   52 HMSIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAG 116
            HM  G AAP  T D+LR+++  AL  + KK  I+LLGSTGSIGTQTLDI RE  D +EV ++AAG
Sbjct:   33 HMMEG-AAPVLTPDNLRESLRRALDSNPKKY-IALLGSTGSIGTQTLDICREYPDYFEVVSIAAG 95          
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|397575173|gb|EJK49569.1| (hypothetical protein THAOC_31545 [Thalassiosira oceanica])

HSP 1 Score: 63.929 bits (154), Expect = 2.075e-9
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 0
Query:   55 IGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAGRRA 119
            I  ++P N+A+SL++T+D +L   + +++IS+LGSTGSIGTQTLDIV    D + V AL+AG  A
Sbjct:   46 IDPSSPVNSAESLKKTLDESLKGSTFQKRISILGSTGSIGTQTLDIVDACPDNFVVDALSAGNNA 110          
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|209402475|gb|ACI45960.1| (putative plastid 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Pyropia yezoensis])

HSP 1 Score: 62.003 bits (149), Expect = 8.918e-9
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0
Query:   60 PSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAG 116
            P NT  S RQT++ ALS  + K++I+LLGSTGSIGTQTLDIV    D + +  LAAG
Sbjct:   14 PVNTDASARQTLERALSGLALKKRITLLGSTGSIGTQTLDIVAACPDAFSIVGLAAG 70          
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|551642935|ref|XP_005824263.1| (1-deoxy-D-xylulose 5-phosphate reductoisomerase [Guillardia theta CCMP2712] >gi|428168337|gb|EKX37283.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Guillardia theta CCMP2712])

HSP 1 Score: 61.6178 bits (148), Expect = 1.367e-8
Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = 0
Query:   30 VLGGFMAFLLEVSHAFTRPAPVHM------------SIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAG 116
            VL   + F    S AF  PA V +            S   AAP  T + L+  VD A    + K+K++LLGSTGSIGTQTLDIV+   + +E+  LAAG
Sbjct:    5 VLPLLVVFGCSCSDAFIVPASVSLARKGLGVRMSSASQQGAAPFGTVEDLQHVVDEAAKGLNWKKKVTLLGSTGSIGTQTLDIVKNVPERFEIEGLAAG 103          
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|551543490|ref|XP_005759895.1| (1-deoxy-D-xylulose 5-phosphate reductoisomerase [Emiliania huxleyi CCMP1516] >gi|485608097|gb|EOD07466.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 61.6178 bits (148), Expect = 1.375e-8
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0
Query:   54 SIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAG 116
            S   A+P  TAD LR  +  AL    +++ ++LLGSTGSIGTQ+LDI RE  D +EV +LAAG
Sbjct:    4 SFDPASPVLTADDLRDGLSRALDGGLQRKHVALLGSTGSIGTQSLDIAREYPDYFEVVSLAAG 66          
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|224011645|ref|XP_002295597.1| (1-deoxy-D-xylulose 5-phosphate reductoisomerase [Thalassiosira pseudonana CCMP1335] >gi|209583628|gb|ACI64314.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 61.6178 bits (148), Expect = 1.487e-8
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0
Query:   55 IGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAGRRA 119
            I  +AP NT +SL++T+  +L   + +++IS+LGSTGSIGTQTLDIV    D + V AL+AG  A
Sbjct:   51 IDPSAPVNTPESLQKTLSESLKGSTFQKRISILGSTGSIGTQTLDIVDACPDNFVVDALSAGNNA 115          
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|115381252|gb|ABI96275.1| (chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Pyropia yezoensis])

HSP 1 Score: 59.6918 bits (143), Expect = 6.579e-8
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   60 PSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAA 115
            P NT  S RQT++ ALS  + K++I+LLGSTGSIGTQTLDIV    D + +  LAA
Sbjct:   14 PVNTDASARQTLERALSGLALKKRITLLGSTGSIGTQTLDIVAACPDAFSIVGLAA 69          
The following BLAST results are available for this feature:
BLAST of EWM24175.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105553|gb|EWM24175.1|2.120e-85100.001-deoxy-d-xylulose 5-phosphate reductoisomerase [N... [more]
gi|298706797|emb|CBJ29720.1|8.506e-1359.321-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
gi|873240278|emb|CEL93618.1|7.829e-1152.70unnamed protein product [Vitrella brassicaformis C... [more]
gi|115381244|gb|ABI96271.1|9.780e-1058.46chloroplast 1-deoxy-D-xylulose 5-phosphate reducto... [more]
gi|397575173|gb|EJK49569.1|2.075e-950.77hypothetical protein THAOC_31545 [Thalassiosira oc... [more]
gi|209402475|gb|ACI45960.1|8.918e-957.89putative plastid 1-deoxy-D-xylulose 5-phosphate re... [more]
gi|551642935|ref|XP_005824263.1|1.367e-841.411-deoxy-D-xylulose 5-phosphate reductoisomerase [G... [more]
gi|551543490|ref|XP_005759895.1|1.375e-852.381-deoxy-D-xylulose 5-phosphate reductoisomerase [E... [more]
gi|224011645|ref|XP_002295597.1|1.487e-850.771-deoxy-D-xylulose 5-phosphate reductoisomerase [T... [more]
gi|115381252|gb|ABI96275.1|6.579e-857.14chloroplast 1-deoxy-D-xylulose 5-phosphate reducto... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6514rna6514Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications