EWM24175.1, cds6498 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|585105553|gb|EWM24175.1| (1-deoxy-d-xylulose 5-phosphate reductoisomerase [Nannochloropsis gaditana]) HSP 1 Score: 253.832 bits (647), Expect = 2.120e-85 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 Query: 1 MLVSVRRVVAFYVRDRRSYVDPNLMRSAIVLGGFMAFLLEVSHAFTRPAPVHMSIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAGRRAYRKPRHV 126 MLVSVRRVVAFYVRDRRSYVDPNLMRSAIVLGGFMAFLLEVSHAFTRPAPVHMSIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAGRRAYRKPRHV Sbjct: 1 MLVSVRRVVAFYVRDRRSYVDPNLMRSAIVLGGFMAFLLEVSHAFTRPAPVHMSIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAGRRAYRKPRHV 126
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|298706797|emb|CBJ29720.1| (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor [Ectocarpus siliculosus]) HSP 1 Score: 73.559 bits (179), Expect = 8.506e-13 Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 0 Query: 58 AAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAG 116 A+P NT ++ ++T+DLAL K+KI+LLGSTGSIGTQTLDI RE+ + +EV +LAAG Sbjct: 10 ASPVNTRETFQRTMDLALEETGAKKKIALLGSTGSIGTQTLDICREKPENFEVVSLAAG 68
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|873240278|emb|CEL93618.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 68.1662 bits (165), Expect = 7.829e-11 Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 0 Query: 46 TRPAPVHMSI---GHAAPSNTADSLRQTVDLALSP-DSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAA 115 TR P+ S+ HAAP+ + +S++ T D A + +S KR+ISLLGSTGSIGTQTLDI+RER +E+ LAA Sbjct: 50 TRRRPIASSLTRMAHAAPTGSEESMKATFDEATNGVESFKRRISLLGSTGSIGTQTLDIIRERPQNFELVGLAA 123
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|115381244|gb|ABI96271.1| (chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Prymnesium parvum]) HSP 1 Score: 64.6994 bits (156), Expect = 9.780e-10 Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0 Query: 52 HMSIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAG 116 HM G AAP T D+LR+++ AL + KK I+LLGSTGSIGTQTLDI RE D +EV ++AAG Sbjct: 33 HMMEG-AAPVLTPDNLRESLRRALDSNPKKY-IALLGSTGSIGTQTLDICREYPDYFEVVSIAAG 95
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|397575173|gb|EJK49569.1| (hypothetical protein THAOC_31545 [Thalassiosira oceanica]) HSP 1 Score: 63.929 bits (154), Expect = 2.075e-9 Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 0 Query: 55 IGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAGRRA 119 I ++P N+A+SL++T+D +L + +++IS+LGSTGSIGTQTLDIV D + V AL+AG A Sbjct: 46 IDPSSPVNSAESLKKTLDESLKGSTFQKRISILGSTGSIGTQTLDIVDACPDNFVVDALSAGNNA 110
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|209402475|gb|ACI45960.1| (putative plastid 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Pyropia yezoensis]) HSP 1 Score: 62.003 bits (149), Expect = 8.918e-9 Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0 Query: 60 PSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAG 116 P NT S RQT++ ALS + K++I+LLGSTGSIGTQTLDIV D + + LAAG Sbjct: 14 PVNTDASARQTLERALSGLALKKRITLLGSTGSIGTQTLDIVAACPDAFSIVGLAAG 70
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|551642935|ref|XP_005824263.1| (1-deoxy-D-xylulose 5-phosphate reductoisomerase [Guillardia theta CCMP2712] >gi|428168337|gb|EKX37283.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Guillardia theta CCMP2712]) HSP 1 Score: 61.6178 bits (148), Expect = 1.367e-8 Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = 0 Query: 30 VLGGFMAFLLEVSHAFTRPAPVHM------------SIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAG 116 VL + F S AF PA V + S AAP T + L+ VD A + K+K++LLGSTGSIGTQTLDIV+ + +E+ LAAG Sbjct: 5 VLPLLVVFGCSCSDAFIVPASVSLARKGLGVRMSSASQQGAAPFGTVEDLQHVVDEAAKGLNWKKKVTLLGSTGSIGTQTLDIVKNVPERFEIEGLAAG 103
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|551543490|ref|XP_005759895.1| (1-deoxy-D-xylulose 5-phosphate reductoisomerase [Emiliania huxleyi CCMP1516] >gi|485608097|gb|EOD07466.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Emiliania huxleyi CCMP1516]) HSP 1 Score: 61.6178 bits (148), Expect = 1.375e-8 Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0 Query: 54 SIGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAG 116 S A+P TAD LR + AL +++ ++LLGSTGSIGTQ+LDI RE D +EV +LAAG Sbjct: 4 SFDPASPVLTADDLRDGLSRALDGGLQRKHVALLGSTGSIGTQSLDIAREYPDYFEVVSLAAG 66
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|224011645|ref|XP_002295597.1| (1-deoxy-D-xylulose 5-phosphate reductoisomerase [Thalassiosira pseudonana CCMP1335] >gi|209583628|gb|ACI64314.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 61.6178 bits (148), Expect = 1.487e-8 Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0 Query: 55 IGHAAPSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAAGRRA 119 I +AP NT +SL++T+ +L + +++IS+LGSTGSIGTQTLDIV D + V AL+AG A Sbjct: 51 IDPSAPVNTPESLQKTLSESLKGSTFQKRISILGSTGSIGTQTLDIVDACPDNFVVDALSAGNNA 115
BLAST of EWM24175.1 vs. NCBI_GenBank
Match: gi|115381252|gb|ABI96275.1| (chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor [Pyropia yezoensis]) HSP 1 Score: 59.6918 bits (143), Expect = 6.579e-8 Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0 Query: 60 PSNTADSLRQTVDLALSPDSKKRKISLLGSTGSIGTQTLDIVRERGDIYEVTALAA 115 P NT S RQT++ ALS + K++I+LLGSTGSIGTQTLDIV D + + LAA Sbjct: 14 PVNTDASARQTLERALSGLALKKRITLLGSTGSIGTQTLDIVAACPDAFSIVGLAA 69 The following BLAST results are available for this feature:
BLAST of EWM24175.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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