rna6513, rna6513 (mRNA) Nannochloropsis gaditana

Overview
Namerna6513
Unique Namerna6513
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length699
Alignment locationCM002468.1:689524..691922 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100955g1.10486.mrna
Orig protein idgnl|cribi|Naga_100955g1.10486
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:689524..691922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100955g1gene6293Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24176.1cds6497Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6513rna6513-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6513 ID=rna6513|Name=rna6513|organism=Nannochloropsis gaditana|type=mRNA|length=699bp
ATGCCTCCAGTGAAATTGGAGGGCCGGGTGACGCGTAGCAGTAGCAACGC
CAGCACAGGTATCAACGAAGACGACTGTGGACCCAGTACCGAAACTAGTA
TTGACAATTTTCAAGGGGGAAGACGTCAGCCTAGTGTGCCAGCCCTGCTT
CCCACGAGGGTCTCGTCGCGCACGGCTCGCAACGCCCTGACAAGCCAGAG
CAGGAACAGTGTGTATCAATACGAACACCCAGGGGGACAAGCAGTCTTGA
ATGCGGTGGTGAAAGTCGATGACGAAAGTTCTGTGGCGACCAATTCCTCC
TTCACTTCGACCGGCGCCAGCGCGCGGCGGGGGGGAGGGGGAGGAGGTGG
CGGGAGCGCCAAAAAAGCCACGATTCCGGGATTTTTGACGAAGACCTACG
AGATATTTTCGAGTGCAGAGCACAAGGATTTGTGCGGGTGGGGGGCGAGG
GGGGACACAATTGTGATCAAGAGGGTACCAGAGTTCGCCGCGCGGGTCCT
GCCAAGGTATTTCAAACATTCAAATTTCCAGTCCTTTGTCCGCCAGCTCA
ACATGTACGACTTCCACAAAACGGTCCAAGACCCGTCGCACGGTGAATTT
CGGCACGAGTTCTTCCGACAAGGACGGCCGGATTTGCTCCCGTTGATTAA
ACGGAAAGCTATGCGCGCCAGCACCAGGGCCAGAGGCGTCCGACCCTGA
back to top

protein sequence of rna6513

>rna6513-protein ID=rna6513-protein|Name=rna6513|organism=Nannochloropsis gaditana|type=polypeptide|length=540bp
MTIPLPLFYCLLVWAVASLIRCRRQRQNASPCVYRYGRCTVSLTSLAIVG
EIKASGSRSASSPALPLPSVLPLARHQAPRSRKAWCQGQNFSVLVFSVGQ
ILVCLFLAWNLGYTLLHSTFTWPRLGPSISLPSHHSPNLPAERPRPRRLS
TASSSMSSFPASPSGPTHPPSSTAFHVATRLRPLSLLSPATGHNTLTSSA
PSWFILWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVI
LDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFNLLPSLLSTPTS
GLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKI
SQRASAFRNGIPSPHEANATVTLLLHALPPPTPPSTTSPFSSKIEAVERT
GLLQADTFCTSLPPFAPHHFQQEGRGRLPTCCTFEALTGQGRDRKRGAGE
EEEGRDTTCFAAYDLGVGTSSLPSSSSSLFPHHSSFVTLACLPARDVILH
STLSPPPPPPPPPPPPPPPPLPPPPPPPPPPRIFPSASGQ
back to top

mRNA from alignment at CM002468.1:689524..691922-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6513 ID=rna6513|Name=rna6513|organism=Nannochloropsis gaditana|type=mRNA|length=2399bp|location=Sequence derived from alignment at CM002468.1:689524..691922- (Nannochloropsis gaditana)
TGCCGACTAAAAAATGATACGATCCCGGTCTTAGCACGCGCGCGATTATT
GACCAACCTGCGTGACCGGAAATAGCGTGCAAGACAACAAGTGCCTCTCG
CTGCCCTCCCTCCCCCTGTCAGCTATTTCTTCCTTAAAACACTCATCGAT
AATGTACCCCGAACGTAAAACGCCACAACACGTCTTACAGACACGAGCAT
GGATGGTGAAAATTTTGCCACGTGGTGTTATTTCCCTTTGCGGAGCGCAT
GACCATCCCTTTGCCACTTTTCTACTGCCTACTTGTGTGGGCCGTTGCCT
CCCTCATACGATGCCGCCGACAACGACAAAATGCTTCCCCCTGCGTGTAT
CGCTACGGCCGTTGCACGGTCAGCCTCACCTCTTTGGCTATCGTTGGTGA
AATCAAGGCCTCCGGATCTCGGTCTGCCTCCTCTCCTGCACTCCCTCTCC
CCTCCGTCCTACCCCTCGCCCGTCATCAAGCTCCAAGATCCCGTAAAGCT
TGGTGCCAGGGCCAAAATTTTAGCGTCCTTGTCTTCAGCGTCGGTCAAAT
CCTCGTCTGCCTTTTTCTGGCCTGGAATCTTGGATATACCCTCCTCCACT
CGACCTTCACGTGGCCCCGACTCGGCCCTTCCATCTCCCTCCCATCCCAT
CACAGCCCGAACCTCCCCGCAGAGAGACCACGCCCACGCCGTCTATCCAC
CGCCTCCTCGTCCATGTCTTCATTCCCGGCCTCCCCTTCCGGTCCCACCC
ACCCCCCGTCCTCCACCGCCTTTCACGTCGCCACTCGTCTCCGCCCCCTC
TCCCTCCTCTCTCCCGCCACCGGCCACAACACCTTAACTTCCTCCGCGCC
CAGCTGGTTTATCCTCTGGCTGGCTTCCTTCCTCTCTCTCTCCATCCATG
AATGGGGCCACGCGCGCCAGGCAGTCAAAGAAGGCATCGGCTATCAGGCC
ATCGGGGTTTATTTTGCCTTCGGCCTTTTCCCCGGCGCATACGTCATCCT
CGATCCCTTCCTCCTTCGGGCCCTCCCTCCTCTCGCACAGCTTCGCATTC
TCGCCGCCGGTGTCTGGCAGAACCTCCTTCTCTGCCTCTTCACCGGCCTC
CTCCTCTTCTTCAACCTCCTCCCCTCCCTCCTGAGCACTCCCACCTCCGG
ACTCCTCTTCCTCCCTCCCCCCCTCCCCCCCTCCTCGCCCCTCGCCTCCC
TATTCCGCCCCGGCCATGTCCTTGCTTCCCTCCAAGACCTTTCTACCCCT
TCCCTCCCTGCCTGGGAGGAAGCCGTTCAAATTCAAATTGAAAAAATCTC
CCAGCGGGCCAGTGCCTTCCGGAACGGCATCCCTTCTCCTCACGAAGCCA
ATGCCACCGTCACCCTCCTCCTTCACGCGCTTCCTCCTCCCACCCCTCCC
TCCACCACGTCCCCCTTCTCGTCGAAGATCGAGGCTGTGGAGCGGACCGG
CCTCCTCCAAGCCGACACCTTCTGCACCTCCCTTCCTCCCTTCGCTCCTC
ATCACTTCCAGCAGGAAGGAAGAGGGCGCCTCCCCACATGCTGCACCTTC
GAAGCCCTCACCGGCCAGGGGCGAGACAGGAAGAGGGGTGCGGGGGAGGA
GGAGGAAGGGCGGGACACTACATGCTTCGCTGCCTACGACCTCGGCGTCG
GCACCTCCTCCCTTCCCTCCTCCTCCTCCTCCCTCTTTCCTCATCATTCC
TCCTTCGTCACCCTCGCCTGCCTTCCTGCCCGGGACGTCATTCTGCACTC
CACACTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCGCATCTTC
CCTTCTGCTTCCGGCCAGTGACCCTTCCCCCCAACATCCTCCTCAAACTC
ACCCTGGCCTCCGACCAGGTCCTAGTCTATGAAGGTCCCCTTTCCCCCTT
CCTCCCTCCCGCCCTTCCCCCCTCCCTCCTCACCGACCGGCAGCCATCCC
CGTGGCTGCGGGCCCTTCTTCCTCCCCCCCTTGCACGTGCTCTCCCTCCC
TTCCTCCTCCAATGGACAGCGGCTGCCCTCGACGTGTCTTTCTCCGTCGC
TCTCCTTAACTTGATCCCTTTCCCGCCTTTGGATGGGGCGCGGGTGCTGG
CGCTATTGGCCTTGCTGGGAGGACGGGGGAGAGGGGGAGGGAGGAGGAGG
GGGGGGATGGGGGGCAGGTACCGATGGTTGATAGGAGGGATAGGTTTGCT
CGTGGTATTGAATGGGCTCTTCACAATGCTGGCTATGTTTGGGTAAGAGG
AGGAGGAGGTGGAGAAGGAGGAGAAGAAGAAGGAAAAAGGGGGAAAGCCC
TCATGGCGTATGTACTTGCAAAGGAATATTGTAACCGTAATGTGACCGT
back to top

Coding sequence (CDS) from alignment at CM002468.1:689524..691922-

>rna6513 ID=rna6513|Name=rna6513|organism=Nannochloropsis gaditana|type=CDS|length=1623bp|location=Sequence derived from alignment at CM002468.1:689524..691922- (Nannochloropsis gaditana)
ATGACCATCCCTTTGCCACTTTTCTACTGCCTACTTGTGTGGGCCGTTGC
CTCCCTCATACGATGCCGCCGACAACGACAAAATGCTTCCCCCTGCGTGT
ATCGCTACGGCCGTTGCACGGTCAGCCTCACCTCTTTGGCTATCGTTGGT
GAAATCAAGGCCTCCGGATCTCGGTCTGCCTCCTCTCCTGCACTCCCTCT
CCCCTCCGTCCTACCCCTCGCCCGTCATCAAGCTCCAAGATCCCGTAAAG
CTTGGTGCCAGGGCCAAAATTTTAGCGTCCTTGTCTTCAGCGTCGGTCAA
ATCCTCGTCTGCCTTTTTCTGGCCTGGAATCTTGGATATACCCTCCTCCA
CTCGACCTTCACGTGGCCCCGACTCGGCCCTTCCATCTCCCTCCCATCCC
ATCACAGCCCGAACCTCCCCGCAGAGAGACCACGCCCACGCCGTCTATCC
ACCGCCTCCTCGTCCATGTCTTCATTCCCGGCCTCCCCTTCCGGTCCCAC
CCACCCCCCGTCCTCCACCGCCTTTCACGTCGCCACTCGTCTCCGCCCCC
TCTCCCTCCTCTCTCCCGCCACCGGCCACAACACCTTAACTTCCTCCGCG
CCCAGCTGGTTTATCCTCTGGCTGGCTTCCTTCCTCTCTCTCTCCATCCA
TGAATGGGGCCACGCGCGCCAGGCAGTCAAAGAAGGCATCGGCTATCAGG
CCATCGGGGTTTATTTTGCCTTCGGCCTTTTCCCCGGCGCATACGTCATC
CTCGATCCCTTCCTCCTTCGGGCCCTCCCTCCTCTCGCACAGCTTCGCAT
TCTCGCCGCCGGTGTCTGGCAGAACCTCCTTCTCTGCCTCTTCACCGGCC
TCCTCCTCTTCTTCAACCTCCTCCCCTCCCTCCTGAGCACTCCCACCTCC
GGACTCCTCTTCCTCCCTCCCCCCCTCCCCCCCTCCTCGCCCCTCGCCTC
CCTATTCCGCCCCGGCCATGTCCTTGCTTCCCTCCAAGACCTTTCTACCC
CTTCCCTCCCTGCCTGGGAGGAAGCCGTTCAAATTCAAATTGAAAAAATC
TCCCAGCGGGCCAGTGCCTTCCGGAACGGCATCCCTTCTCCTCACGAAGC
CAATGCCACCGTCACCCTCCTCCTTCACGCGCTTCCTCCTCCCACCCCTC
CCTCCACCACGTCCCCCTTCTCGTCGAAGATCGAGGCTGTGGAGCGGACC
GGCCTCCTCCAAGCCGACACCTTCTGCACCTCCCTTCCTCCCTTCGCTCC
TCATCACTTCCAGCAGGAAGGAAGAGGGCGCCTCCCCACATGCTGCACCT
TCGAAGCCCTCACCGGCCAGGGGCGAGACAGGAAGAGGGGTGCGGGGGAG
GAGGAGGAAGGGCGGGACACTACATGCTTCGCTGCCTACGACCTCGGCGT
CGGCACCTCCTCCCTTCCCTCCTCCTCCTCCTCCCTCTTTCCTCATCATT
CCTCCTTCGTCACCCTCGCCTGCCTTCCTGCCCGGGACGTCATTCTGCAC
TCCACACTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCCCCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCGCATCT
TCCCTTCTGCTTCCGGCCAGTGA
back to top
Synonyms
Publications