EWM24176.1, cds6497 (CDS) Nannochloropsis gaditana

Overview
NameEWM24176.1
Unique Namecds6497
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:690052..691674 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24176.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100955g1.10486.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:690052..691674 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004222metalloendopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001193MBTPS2
Homology
BLAST of EWM24176.1 vs. NCBI_GenBank
Match: gi|585105554|gb|EWM24176.1| (hypothetical protein Naga_100955g1 [Nannochloropsis gaditana])

HSP 1 Score: 1049.65 bits (2713), Expect = 0.000e+0
Identity = 540/540 (100.00%), Postives = 540/540 (100.00%), Query Frame = 0
Query:    1 MTIPLPLFYCLLVWAVASLIRCRRQRQNASPCVYRYGRCTVSLTSLAIVGEIKASGSRSASSPALPLPSVLPLARHQAPRSRKAWCQGQNFSVLVFSVGQILVCLFLAWNLGYTLLHSTFTWPRLGPSISLPSHHSPNLPAERPRPRRLSTASSSMSSFPASPSGPTHPPSSTAFHVATRLRPLSLLSPATGHNTLTSSAPSWFILWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFNLLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRASAFRNGIPSPHEANATVTLLLHALPPPTPPSTTSPFSSKIEAVERTGLLQADTFCTSLPPFAPHHFQQEGRGRLPTCCTFEALTGQGRDRKRGAGEEEEGRDTTCFAAYDLGVGTSSLPSSSSSLFPHHSSFVTLACLPARDVILHSTLSPPPPPPPPPPPPPPPPLPPPPPPPPPPRIFPSASGQ 540
            MTIPLPLFYCLLVWAVASLIRCRRQRQNASPCVYRYGRCTVSLTSLAIVGEIKASGSRSASSPALPLPSVLPLARHQAPRSRKAWCQGQNFSVLVFSVGQILVCLFLAWNLGYTLLHSTFTWPRLGPSISLPSHHSPNLPAERPRPRRLSTASSSMSSFPASPSGPTHPPSSTAFHVATRLRPLSLLSPATGHNTLTSSAPSWFILWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFNLLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRASAFRNGIPSPHEANATVTLLLHALPPPTPPSTTSPFSSKIEAVERTGLLQADTFCTSLPPFAPHHFQQEGRGRLPTCCTFEALTGQGRDRKRGAGEEEEGRDTTCFAAYDLGVGTSSLPSSSSSLFPHHSSFVTLACLPARDVILHSTLSPPPPPPPPPPPPPPPPLPPPPPPPPPPRIFPSASGQ
Sbjct:    1 MTIPLPLFYCLLVWAVASLIRCRRQRQNASPCVYRYGRCTVSLTSLAIVGEIKASGSRSASSPALPLPSVLPLARHQAPRSRKAWCQGQNFSVLVFSVGQILVCLFLAWNLGYTLLHSTFTWPRLGPSISLPSHHSPNLPAERPRPRRLSTASSSMSSFPASPSGPTHPPSSTAFHVATRLRPLSLLSPATGHNTLTSSAPSWFILWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFNLLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRASAFRNGIPSPHEANATVTLLLHALPPPTPPSTTSPFSSKIEAVERTGLLQADTFCTSLPPFAPHHFQQEGRGRLPTCCTFEALTGQGRDRKRGAGEEEEGRDTTCFAAYDLGVGTSSLPSSSSSLFPHHSSFVTLACLPARDVILHSTLSPPPPPPPPPPPPPPPPLPPPPPPPPPPRIFPSASGQ 540          
BLAST of EWM24176.1 vs. NCBI_GenBank
Match: gi|1050590962|ref|XP_017616820.1| (PREDICTED: membrane-bound transcription factor site-2 protease homolog [Gossypium arboreum])

HSP 1 Score: 98.2117 bits (243), Expect = 5.024e-18
Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 0
Query:  206 LWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFN---LLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRAS 355
            L++++ +S+S+HE+GHA     EGI  + I V+ A  LFPGA V  D  LL+ALP L  LR+  AG+W N + C   GLLLF     L P  +   +      P  L  +SPL+    PG  +ASL D +  S+  W E   +  +KI   +S
Sbjct:  119 LFISTLVSVSVHEFGHAIALASEGIQLEYIAVFIAV-LFPGALVAFDYDLLQALPRLTSLRVYCAGIWHNAVFCALCGLLLFLRPVILFPFYMHAES------PLILEVASPLSEFLSPGDAIASLDDAAIHSMQDWIEMTALLDKKILHNSS 264          
BLAST of EWM24176.1 vs. NCBI_GenBank
Match: gi|1029086462|ref|XP_016703388.1| (PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X2 [Gossypium hirsutum])

HSP 1 Score: 97.4413 bits (241), Expect = 5.485e-18
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 0
Query:  206 LWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFN---LLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRASAFR 358
            L++++ +S+S+HE+GHA     EGI  + I V+ A  LFPGA V  D  LL+ALP L  LR+  AG+W N + C   GLLLF     L P  +   +      P  L  +SPL+    PG  +ASL   +  S+  W E   +  +KI Q +S  R
Sbjct:   62 LFISTLVSVSVHEFGHAIALASEGIQLEYIAVFIAV-LFPGALVAFDYDLLQALPRLTSLRVYCAGIWHNAVFCALCGLLLFLQPVILFPFYMHAES------PLVLEVASPLSEFLSPGDAIASLDGAAIHSVQNWMEMTALLDKKILQNSSDSR 210          
BLAST of EWM24176.1 vs. NCBI_GenBank
Match: gi|763814178|gb|KJB81030.1| (hypothetical protein B456_013G126100 [Gossypium raimondii])

HSP 1 Score: 97.4413 bits (241), Expect = 6.337e-18
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 0
Query:  206 LWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFN---LLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRASAFR 358
            L++++ +S+S+HE+GHA     EGI  + I V+ A  LFPGA V  D  LL+ALP L  LR+  AG+W N + C   GLLLF     L P  +   +      P  L  +SPL+    PG  +ASL   +  S+  W E   +  +KI Q +S  R
Sbjct:  119 LFISTLVSVSVHEFGHAIALASEGIQLEYIAVFIAV-LFPGALVAFDYDLLQALPRLTSLRVYCAGIWHNAVFCALCGLLLFLQPVILFPFYIHAES------PLVLEVASPLSEFLSPGDAIASLDGAAIHSVQNWMEMTALLDKKILQNSSDSR 267          
BLAST of EWM24176.1 vs. NCBI_GenBank
Match: gi|1029086460|ref|XP_016703387.1| (PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Gossypium hirsutum])

HSP 1 Score: 97.0561 bits (240), Expect = 7.627e-18
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 0
Query:  206 LWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFN---LLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRASAFR 358
            L++++ +S+S+HE+GHA     EGI  + I V+ A  LFPGA V  D  LL+ALP L  LR+  AG+W N + C   GLLLF     L P  +   +      P  L  +SPL+    PG  +ASL   +  S+  W E   +  +KI Q +S  R
Sbjct:   62 LFISTLVSVSVHEFGHAIALASEGIQLEYIAVFIAV-LFPGALVAFDYDLLQALPRLTSLRVYCAGIWHNAVFCALCGLLLFLQPVILFPFYMHAES------PLVLEVASPLSEFLSPGDAIASLDGAAIHSVQNWMEMTALLDKKILQNSSDSR 210          
BLAST of EWM24176.1 vs. NCBI_GenBank
Match: gi|823264695|ref|XP_012465090.1| (PREDICTED: membrane-bound transcription factor site-2 protease homolog [Gossypium raimondii] >gi|763814177|gb|KJB81029.1| hypothetical protein B456_013G126100 [Gossypium raimondii])

HSP 1 Score: 97.0561 bits (240), Expect = 9.390e-18
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 0
Query:  206 LWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFN---LLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRASAFR 358
            L++++ +S+S+HE+GHA     EGI  + I V+ A  LFPGA V  D  LL+ALP L  LR+  AG+W N + C   GLLLF     L P  +   +      P  L  +SPL+    PG  +ASL   +  S+  W E   +  +KI Q +S  R
Sbjct:  119 LFISTLVSVSVHEFGHAIALASEGIQLEYIAVFIAV-LFPGALVAFDYDLLQALPRLTSLRVYCAGIWHNAVFCALCGLLLFLQPVILFPFYIHAES------PLVLEVASPLSEFLSPGDAIASLDGAAIHSVQNWMEMTALLDKKILQNSSDSR 267          
BLAST of EWM24176.1 vs. NCBI_GenBank
Match: gi|1029020621|ref|XP_016674165.1| (PREDICTED: membrane-bound transcription factor site-2 protease homolog [Gossypium hirsutum])

HSP 1 Score: 94.7449 bits (234), Expect = 5.626e-17
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 0
Query:  206 LWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFN---LLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRAS 355
            L++++ +S+S+HE+GHA     EGI  + I V+ A  LFPGA V  D  LL+ALP L  LR+  AG+W N + C   GLLLF     L P  +   +      P  L  +SPL+    PG  +ASL   +  S+  W E   +  +KI   +S
Sbjct:  119 LFISTLVSVSVHEFGHAIALASEGIQLEYIAVFIAV-LFPGALVAFDYDLLQALPRLTSLRVYCAGIWHNAVFCALCGLLLFLRPVILFPFYMHAES------PLILEVASPLSEFLSPGDAIASLDGAAIHSMQDWIEMTALLDKKILHNSS 264          
BLAST of EWM24176.1 vs. NCBI_GenBank
Match: gi|1063500044|ref|XP_007031009.2| (PREDICTED: membrane-bound transcription factor site-2 protease homolog [Theobroma cacao])

HSP 1 Score: 94.3597 bits (233), Expect = 7.514e-17
Identity = 56/153 (36.60%), Postives = 80/153 (52.29%), Query Frame = 0
Query:  206 LWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFN---LLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRAS 355
            L++++  S+S+HE+GHA     EGI  + I V+ A  LFPGA V  D  LL+ALP L  LR+  AG+W N + C   GLLLF     L P  +   +     L   + P+SPL+    PG  + SL  +    +  W E   +  +KI Q +S
Sbjct:  120 LFVSTLFSVSVHEFGHAVALASEGIQLEYIAVFLAV-LFPGALVAFDHDLLQALPRLTALRVYCAGIWHNAVFCAVCGLLLFLKPVILFPFYIHAESP----LVLDVAPASPLSEFLSPGDAIVSLDGVRIHDVQEWVEMTSLLDKKIRQNSS 267          
BLAST of EWM24176.1 vs. NCBI_GenBank
Match: gi|508719614|gb|EOY11511.1| (Protease m50 membrane-bound transcription factor site 2 protease, putative [Theobroma cacao])

HSP 1 Score: 94.3597 bits (233), Expect = 7.718e-17
Identity = 56/153 (36.60%), Postives = 80/153 (52.29%), Query Frame = 0
Query:  206 LWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFN---LLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRAS 355
            L++++  S+S+HE+GHA     EGI  + I V+ A  LFPGA V  D  LL+ALP L  LR+  AG+W N + C   GLLLF     L P  +   +     L   + P+SPL+    PG  + SL  +    +  W E   +  +KI Q +S
Sbjct:  120 LFVSTLFSVSVHEFGHAVALASEGIQLEYIAVFLAV-LFPGALVAFDHDLLQALPRLTALRVYCAGIWHNAVFCAVCGLLLFLKPVILFPFYIHAESP----LVLDVAPASPLSEFLSPGDAIVSLDGVRIHDVQEWVEMTSLLDKKIRQNSS 267          
BLAST of EWM24176.1 vs. NCBI_GenBank
Match: gi|1204900910|ref|XP_021282585.1| (membrane-bound transcription factor site-2 protease homolog [Herrania umbratica])

HSP 1 Score: 94.3597 bits (233), Expect = 7.858e-17
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 0
Query:  206 LWLASFLSLSIHEWGHARQAVKEGIGYQAIGVYFAFGLFPGAYVILDPFLLRALPPLAQLRILAAGVWQNLLLCLFTGLLLFFN---LLPSLLSTPTSGLLFLPPPLPPSSPLASLFRPGHVLASLQDLSTPSLPAWEEAVQIQIEKISQRAS 355
            L++++ +S+++HE+GHA     EGI  + I V+ A  LFPGA V  D  LL+ALP L  LR+  AG+W N + C   GLLLF     L P  +   +     L   + P+SPL+    PG  + SL  +    +  W E   +  +KI Q +S
Sbjct:  120 LFVSTLVSVAVHEFGHAVALASEGIQLEYIAVFIAV-LFPGALVAFDHDLLQALPRLTALRVYCAGIWHNAVFCAVCGLLLFLKPVILFPFYIHAESP----LVLDVAPASPLSEFLSPGDAIVSLDGVRIHDVQDWVEMTSVLDKKIRQNSS 267          
The following BLAST results are available for this feature:
BLAST of EWM24176.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105554|gb|EWM24176.1|0.000e+0100.00hypothetical protein Naga_100955g1 [Nannochloropsi... [more]
gi|1050590962|ref|XP_017616820.1|5.024e-1837.91PREDICTED: membrane-bound transcription factor sit... [more]
gi|1029086462|ref|XP_016703388.1|5.485e-1837.82PREDICTED: membrane-bound transcription factor sit... [more]
gi|763814178|gb|KJB81030.1|6.337e-1837.82hypothetical protein B456_013G126100 [Gossypium ra... [more]
gi|1029086460|ref|XP_016703387.1|7.627e-1837.82PREDICTED: membrane-bound transcription factor sit... [more]
gi|823264695|ref|XP_012465090.1|9.390e-1837.82PREDICTED: membrane-bound transcription factor sit... [more]
gi|1029020621|ref|XP_016674165.1|5.626e-1737.25PREDICTED: membrane-bound transcription factor sit... [more]
gi|1063500044|ref|XP_007031009.2|7.514e-1736.60PREDICTED: membrane-bound transcription factor sit... [more]
gi|508719614|gb|EOY11511.1|7.718e-1736.60Protease m50 membrane-bound transcription factor s... [more]
gi|1204900910|ref|XP_021282585.1|7.858e-1735.95membrane-bound transcription factor site-2 proteas... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6513rna6513Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications